Wall clock time and date at job start Sat Apr 11 2020 06:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40423 * 107.86638 * 179.90771 * 3 2 1 5 5 N 1.40073 * 125.97492 * 180.14591 * 4 3 2 6 6 C 1.34777 * 120.00360 * 0.22743 * 5 4 3 7 7 O 1.21575 * 119.99455 * 359.97438 * 6 5 4 8 8 C 1.47802 * 120.00293 * 180.02562 * 6 5 4 9 9 C 1.39557 * 119.59432 * 180.02562 * 8 6 5 10 10 C 1.38197 * 118.89150 * 180.02562 * 9 8 6 11 11 C 1.39470 * 118.50472 * 359.97438 * 10 9 8 12 12 C 1.39194 * 119.63491 * 359.90598 * 11 10 9 13 13 N 1.31848 * 120.09084 * 359.92376 * 12 11 10 14 14 C 1.50731 * 121.19504 * 180.28536 * 12 11 10 15 15 C 1.52842 * 110.45408 * 339.33072 * 14 12 11 16 16 C 1.53419 * 108.89307 * 51.38240 * 15 14 12 17 17 N 1.39208 * 119.28476 * 179.68765 * 11 10 9 18 18 N 1.31239 * 108.05045 * 0.36163 * 4 3 2 19 19 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 20 20 C 1.46498 * 125.97410 * 359.96275 * 19 2 1 21 21 C 1.50702 * 109.47036 * 90.00121 * 20 19 2 22 22 H 1.08000 * 120.00135 * 359.97438 * 21 20 19 23 23 C 1.37878 * 119.99820 * 179.97438 * 21 20 19 24 24 N 1.31513 * 120.00006 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 120.00133 * 0.02562 * 23 21 20 26 26 H 1.48492 * 109.47361 * 89.99884 * 25 23 21 27 27 H 1.48500 * 109.47062 * 209.99820 * 25 23 21 28 28 H 1.48503 * 109.47091 * 329.99515 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 32 32 H 1.07996 * 126.06578 * 0.03842 * 3 2 1 33 33 H 0.97007 * 119.99770 * 180.23253 * 5 4 3 34 34 H 1.07994 * 120.55439 * 0.02562 * 9 8 6 35 35 H 1.08010 * 120.74684 * 179.97438 * 10 9 8 36 36 H 1.09002 * 109.30549 * 99.63198 * 14 12 11 37 37 H 1.09006 * 109.30224 * 219.23000 * 14 12 11 38 38 H 1.08994 * 109.56302 * 171.20761 * 15 14 12 39 39 H 1.08997 * 109.56639 * 291.44320 * 15 14 12 40 40 H 1.09000 * 109.79880 * 56.30608 * 16 15 14 41 41 H 1.09002 * 109.79396 * 177.15644 * 16 15 14 42 42 H 0.97001 * 120.53182 * 346.64759 * 17 11 10 43 43 H 1.08996 * 109.47070 * 210.00160 * 20 19 2 44 44 H 1.09004 * 109.46994 * 330.00070 * 20 19 2 45 45 H 0.97006 * 120.00197 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6372 0.6545 0.0022 5 7 4.7729 1.4743 0.0057 6 6 4.6362 2.8151 0.0121 7 8 3.5271 3.3130 0.0142 8 6 5.8346 3.6802 0.0153 9 6 5.6832 5.0675 0.0224 10 6 6.8136 5.8626 0.0247 11 6 8.0631 5.2430 0.0205 12 6 8.1423 3.8533 0.0160 13 7 7.0409 3.1284 0.0173 14 6 9.4739 3.1472 0.0178 15 6 10.5751 4.0824 -0.4811 16 6 10.5064 5.3962 0.3083 17 7 9.2125 6.0283 0.0162 18 7 3.6337 -0.6579 -0.0045 19 7 2.3016 -1.0910 -0.0059 20 6 1.8499 -2.4846 -0.0127 21 6 1.6943 -2.9553 -1.4359 22 1 1.9099 -2.2834 -2.2535 23 6 1.2767 -4.2437 -1.6941 24 7 1.1404 -4.6543 -2.9360 25 14 0.9031 -5.4056 -0.2799 26 1 -0.5278 -5.2823 0.0974 27 1 1.1860 -6.8020 -0.6985 28 1 1.7543 -5.0563 0.8858 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5186 31 1 -0.3633 0.8928 -0.5090 32 1 1.9719 2.1210 0.0006 33 1 5.6579 1.0770 0.0036 34 1 4.6991 5.5123 0.0259 35 1 6.7312 6.9395 0.0298 36 1 9.7085 2.8228 1.0316 37 1 9.4210 2.2766 -0.6360 38 1 11.5478 3.6151 -0.3283 39 1 10.4296 4.2842 -1.5423 40 1 10.5839 5.1900 1.3758 41 1 11.3175 6.0554 -0.0009 42 1 9.1601 6.9775 -0.1768 43 1 2.5847 -3.1072 0.4976 44 1 0.8915 -2.5584 0.5013 45 1 0.8463 -5.5607 -3.1177 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897405772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:18 Heat of formation + Delta-G solvation = 58.911106 kcal Electronic energy + Delta-G solvation = -28197.400362 eV Core-core repulsion = 24215.335346 eV Total energy + Delta-G solvation = -3982.065016 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.41289 -41.78274 -40.38413 -37.85376 -36.41400 -35.27668 -34.82650 -33.29431 -32.81839 -31.85508 -31.64668 -29.09020 -27.89892 -26.90382 -25.30413 -24.42136 -24.29784 -23.04486 -21.31863 -21.24506 -20.63722 -19.23414 -18.81122 -18.48790 -17.84657 -17.49543 -16.98219 -16.71365 -16.28132 -16.18021 -15.93358 -15.54260 -15.33625 -15.13917 -14.91847 -14.57508 -14.50238 -14.30359 -14.07418 -13.89266 -13.85007 -13.76134 -13.64275 -13.27397 -12.90588 -12.69709 -12.54920 -12.30617 -12.07671 -11.94522 -11.84295 -11.63567 -11.58596 -11.43991 -11.20337 -10.89257 -10.59035 -10.43896 -9.62255 -9.15699 -8.56756 -8.40437 -6.51867 -0.27794 0.23963 0.94522 1.27291 1.35085 1.40092 1.48139 1.49244 2.14239 2.25714 2.27151 2.37968 2.84647 2.91539 3.01899 3.55324 3.64932 3.83265 3.99088 4.05227 4.08625 4.10256 4.13802 4.33021 4.44002 4.53743 4.63074 4.73501 4.74244 4.78075 4.80228 4.82134 4.83315 4.97729 5.02097 5.05697 5.10283 5.12986 5.22379 5.24121 5.29882 5.44340 5.83869 5.98779 6.03566 6.16825 6.36726 6.51735 6.64574 6.79430 6.98429 7.04202 7.11948 8.76322 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019506 B = 0.002168 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.138014 B =12914.137347 C =13933.148190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.092 3.908 3 C -0.299 4.299 4 C 0.272 3.728 5 N -0.615 5.615 6 C 0.584 3.416 7 O -0.541 6.541 8 C -0.007 4.007 9 C -0.060 4.060 10 C -0.161 4.161 11 C 0.205 3.795 12 C 0.049 3.951 13 N -0.442 5.442 14 C -0.067 4.067 15 C -0.133 4.133 16 C 0.113 3.887 17 N -0.721 5.721 18 N -0.357 5.357 19 N -0.341 5.341 20 C 0.241 3.759 21 C -0.551 4.551 22 H 0.022 0.978 23 C 0.021 3.979 24 N -0.937 5.937 25 Si 0.952 3.048 26 H -0.248 1.248 27 H -0.277 1.277 28 H -0.246 1.246 29 H 0.103 0.897 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.170 0.830 33 H 0.424 0.576 34 H 0.152 0.848 35 H 0.176 0.824 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.108 0.892 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.117 0.883 42 H 0.419 0.581 43 H 0.049 0.951 44 H 0.075 0.925 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.722 25.110 10.169 32.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.038 4.038 3 C -0.329 4.329 4 C 0.018 3.982 5 N -0.263 5.263 6 C 0.372 3.628 7 O -0.417 6.417 8 C -0.146 4.146 9 C -0.082 4.082 10 C -0.191 4.191 11 C 0.094 3.906 12 C -0.099 4.099 13 N -0.154 5.154 14 C -0.104 4.104 15 C -0.172 4.172 16 C -0.011 4.011 17 N -0.349 5.349 18 N -0.187 5.187 19 N -0.123 5.123 20 C 0.122 3.878 21 C -0.590 4.590 22 H 0.040 0.960 23 C -0.179 4.179 24 N -0.575 5.575 25 Si 0.773 3.227 26 H -0.172 1.172 27 H -0.203 1.203 28 H -0.169 1.169 29 H 0.122 0.878 30 H 0.088 0.912 31 H 0.118 0.882 32 H 0.187 0.813 33 H 0.262 0.738 34 H 0.170 0.830 35 H 0.193 0.807 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.127 0.873 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.135 0.865 42 H 0.257 0.743 43 H 0.067 0.933 44 H 0.093 0.907 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 18.809 23.181 10.093 31.512 hybrid contribution -0.422 0.608 -0.348 0.817 sum 18.387 23.789 9.746 31.606 Atomic orbital electron populations 1.20561 0.84779 1.04565 1.04620 1.21804 0.96857 0.86193 0.98946 1.21479 0.89673 1.00246 1.21516 1.19342 0.88710 0.89332 1.00781 1.42412 1.07283 1.05129 1.71437 1.18267 0.88857 0.80546 0.75137 1.90670 1.26463 1.74335 1.50213 1.20101 0.89817 0.92203 1.12504 1.21943 1.01296 0.91692 0.93282 1.21398 0.89297 1.01998 1.06370 1.18807 0.88867 0.91398 0.91521 1.21275 0.94445 0.89440 1.04711 1.67072 0.97974 1.41733 1.08612 1.20378 0.88207 0.98496 1.03361 1.21928 0.99250 0.95735 1.00258 1.21925 0.84471 0.94892 0.99783 1.44774 1.03888 1.10964 1.75324 1.77196 0.99923 1.09927 1.31668 1.48470 1.01741 1.07192 1.54924 1.19799 0.96472 0.74493 0.97083 1.21246 1.47833 0.98799 0.91083 0.95962 1.25856 0.93691 0.99228 0.99104 1.70040 1.46850 1.19224 1.21426 0.85657 0.80563 0.77616 0.78870 1.17212 1.20272 1.16919 0.87826 0.91200 0.88171 0.81323 0.73768 0.82993 0.80665 0.89346 0.90261 0.87338 0.91542 0.91147 0.86523 0.74281 0.93326 0.90711 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.90 9.89 71.24 0.70 -2.19 16 2 C 0.09 4.00 6.92 41.38 0.29 4.29 16 3 C -0.30 -13.05 9.52 22.11 0.21 -12.84 16 4 C 0.27 12.32 8.11 133.35 1.08 13.40 16 5 N -0.61 -23.44 5.43 -310.15 -1.69 -25.13 16 6 C 0.58 20.61 7.77 86.77 0.67 21.29 16 7 O -0.54 -20.94 13.44 -3.95 -0.05 -21.00 16 8 C -0.01 -0.21 6.74 41.87 0.28 0.07 16 9 C -0.06 -1.31 9.63 22.58 0.22 -1.09 16 10 C -0.16 -2.36 9.99 22.56 0.23 -2.14 16 11 C 0.20 3.01 6.48 38.50 0.25 3.26 16 12 C 0.05 0.97 6.67 42.80 0.29 1.25 16 13 N -0.44 -11.65 9.39 -172.57 -1.62 -13.27 16 14 C -0.07 -0.91 6.00 29.80 0.18 -0.74 16 15 C -0.13 -0.88 6.10 30.68 0.19 -0.69 16 16 C 0.11 0.40 7.11 86.44 0.61 1.02 16 17 N -0.72 -4.89 5.77 -337.45 -1.95 -6.84 16 18 N -0.36 -17.87 12.59 -54.48 -0.69 -18.56 16 19 N -0.34 -16.82 3.59 -338.45 -1.22 -18.04 16 20 C 0.24 11.99 4.88 85.63 0.42 12.41 16 21 C -0.55 -32.70 9.94 25.60 0.25 -32.44 16 22 H 0.02 1.53 8.06 -2.91 -0.02 1.51 16 23 C 0.02 1.20 5.47 84.66 0.46 1.67 16 24 N -0.94 -58.17 13.96 21.45 0.30 -57.87 16 25 Si 0.95 41.77 27.47 68.60 1.88 43.66 16 26 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 27 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 28 H -0.25 -10.04 6.54 99.48 0.65 -9.39 16 29 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 30 H 0.07 2.52 7.71 -2.39 -0.02 2.50 16 31 H 0.10 2.86 8.14 -2.38 -0.02 2.84 16 32 H 0.17 7.04 5.91 -2.91 -0.02 7.03 16 33 H 0.42 14.89 8.14 -92.70 -0.75 14.14 16 34 H 0.15 3.11 7.64 -2.91 -0.02 3.09 16 35 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 36 H 0.09 1.09 8.14 -2.39 -0.02 1.08 16 37 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 41 H 0.12 -0.22 8.14 -2.39 -0.02 -0.24 16 42 H 0.42 0.79 8.86 -92.71 -0.82 -0.03 16 43 H 0.05 2.41 7.20 -2.39 -0.02 2.39 16 44 H 0.08 3.26 7.08 -2.39 -0.02 3.24 16 45 H 0.27 15.61 8.31 -92.70 -0.77 14.84 16 Total: -1.00 -82.60 375.71 0.73 -81.87 By element: Atomic # 1 Polarization: 29.22 SS G_CDS: -0.58 Total: 28.64 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 6.33 Total: 6.52 kcal Atomic # 7 Polarization: -132.84 SS G_CDS: -6.86 Total: -139.70 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.05 Total: -21.00 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 1.88 Total: 43.66 kcal Total: -82.60 0.73 -81.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897405772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.786 kcal (2) G-P(sol) polarization free energy of solvation -82.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds