Wall clock time and date at job start Sat Apr 11 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38874 * 120.33853 * 2 1 4 4 C 1.38305 * 118.50806 * 180.02562 * 3 2 1 5 5 C 1.39143 * 119.09428 * 0.02562 * 4 3 2 6 6 N 1.38992 * 119.70430 * 179.97438 * 5 4 3 7 7 C 1.46503 * 120.00445 * 359.97438 * 6 5 4 8 8 C 1.52994 * 109.47623 * 180.02562 * 7 6 5 9 9 N 1.46498 * 109.47283 * 180.02562 * 8 7 6 10 10 S 1.65600 * 120.00056 * 164.99843 * 9 8 7 11 11 O 1.42098 * 104.27665 * 181.06689 * 10 9 8 12 12 O 1.42098 * 104.28038 * 308.92879 * 10 9 8 13 13 C 1.81404 * 104.44769 * 65.00055 * 10 9 8 14 14 C 1.53000 * 109.47090 * 180.02562 * 13 10 9 15 15 C 1.53003 * 109.47103 * 299.99701 * 14 13 10 16 16 C 1.52995 * 109.47449 * 59.99691 * 14 13 10 17 17 C 1.50697 * 109.47214 * 179.97438 * 14 13 10 18 18 H 1.08004 * 120.00076 * 0.02562 * 17 14 13 19 19 C 1.37880 * 120.00199 * 179.97438 * 17 14 13 20 20 N 1.31515 * 119.99798 * 359.97438 * 19 17 14 21 21 Si 1.86801 * 120.00097 * 180.02562 * 19 17 14 22 22 H 1.48497 * 109.47041 * 59.99909 * 21 19 17 23 23 H 1.48503 * 109.47008 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.46847 * 300.00008 * 21 19 17 25 25 N 1.32396 * 120.58609 * 0.02562 * 5 4 3 26 26 C 1.31970 * 121.62524 * 359.97438 * 25 5 4 27 27 H 1.09007 * 109.46936 * 89.99993 * 1 2 3 28 28 H 1.08993 * 109.47747 * 209.99861 * 1 2 3 29 29 H 1.08998 * 109.46982 * 330.00531 * 1 2 3 30 30 H 1.08001 * 120.74845 * 359.97438 * 3 2 1 31 31 H 1.07994 * 120.45256 * 179.72768 * 4 3 2 32 32 H 0.97002 * 119.99871 * 180.02562 * 6 5 4 33 33 H 1.08999 * 109.47011 * 300.00902 * 7 6 5 34 34 H 1.09010 * 109.46557 * 60.00012 * 7 6 5 35 35 H 1.09005 * 109.46709 * 300.00119 * 8 7 6 36 36 H 1.09000 * 109.47098 * 59.99825 * 8 7 6 37 37 H 0.97003 * 119.99886 * 345.00064 * 9 8 7 38 38 H 1.09004 * 109.46966 * 299.99871 * 13 10 9 39 39 H 1.08998 * 109.47218 * 60.00140 * 13 10 9 40 40 H 1.09003 * 109.46843 * 60.00263 * 15 14 13 41 41 H 1.08999 * 109.47390 * 179.97438 * 15 14 13 42 42 H 1.09000 * 109.47130 * 300.00539 * 15 14 13 43 43 H 1.09004 * 109.46965 * 60.00001 * 16 14 13 44 44 H 1.09000 * 109.47582 * 179.97438 * 16 14 13 45 45 H 1.09003 * 109.47320 * 300.00241 * 16 14 13 46 46 H 0.97001 * 119.99807 * 180.02562 * 20 19 17 47 47 H 1.08004 * 119.56936 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2085 1.1986 0.0000 4 6 3.5908 1.1544 -0.0005 5 6 4.2282 -0.0825 -0.0016 6 7 5.6169 -0.1417 -0.0027 7 6 6.4028 1.0947 -0.0033 8 6 7.8938 0.7513 -0.0051 9 7 8.6796 1.9877 -0.0051 10 16 10.2933 1.9431 0.3644 11 8 10.7074 3.3004 0.2900 12 8 10.3527 1.2251 1.5891 13 6 11.0383 0.9760 -0.9774 14 6 12.5465 0.8616 -0.7470 15 6 13.1661 2.2603 -0.7218 16 6 12.8069 0.1643 0.5897 17 6 13.1653 0.0576 -1.8613 18 1 12.5449 -0.3324 -2.6548 19 6 14.5236 -0.1792 -1.8685 20 7 15.2792 0.2970 -0.9032 21 14 15.2907 -1.1752 -3.2502 22 1 15.0376 -0.4987 -4.5476 23 1 16.7546 -1.2864 -3.0265 24 1 14.6897 -2.5329 -3.2743 25 7 3.5237 -1.2034 -0.0026 26 6 2.2040 -1.1913 -0.0021 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 1.6863 2.1440 -0.0004 31 1 4.1676 2.0674 -0.0050 32 1 6.0656 -1.0016 -0.0038 33 1 6.1633 1.6771 -0.8930 34 1 6.1647 1.6769 0.8870 35 1 8.1335 0.1688 0.8845 36 1 8.1315 0.1693 -0.8955 37 1 8.2547 2.8325 -0.2215 38 1 10.5972 -0.0207 -0.9951 39 1 10.8524 1.4725 -1.9297 40 1 12.7184 2.8415 0.0844 41 1 14.2405 2.1789 -0.5572 42 1 12.9806 2.7571 -1.6741 43 1 12.3655 -0.8322 0.5717 44 1 13.8813 0.0824 0.7536 45 1 12.3592 0.7455 1.3959 46 1 16.2348 0.1307 -0.9085 47 1 1.6625 -2.1258 -0.0026 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921873757.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:36 Heat of formation + Delta-G solvation = -39.590210 kcal Electronic energy + Delta-G solvation = -27213.552800 eV Core-core repulsion = 23330.367647 eV Total energy + Delta-G solvation = -3883.185153 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.51407 -37.34924 -36.57938 -36.31460 -35.39701 -34.91445 -33.18207 -31.69862 -31.49080 -28.68779 -26.68986 -26.00856 -25.74825 -25.25262 -24.24292 -22.80174 -21.63986 -19.67841 -18.90052 -18.08780 -17.49661 -16.89417 -16.17587 -15.90044 -15.83760 -15.33578 -15.25771 -14.86733 -14.74384 -14.55179 -14.50998 -14.15014 -13.43340 -13.27357 -13.15956 -13.06390 -12.76104 -12.55381 -12.50095 -12.31514 -12.11826 -11.88890 -11.64999 -11.49546 -11.12337 -11.08335 -10.98452 -10.74362 -10.45106 -10.33094 -10.30662 -10.15047 -9.99203 -9.72208 -9.68254 -9.67356 -9.36597 -8.72384 -8.42515 -7.90281 -6.06002 -4.18202 0.76151 1.03046 1.17446 2.67055 3.25169 3.28302 3.30931 3.32419 3.64561 4.20292 4.32305 4.35791 4.41210 4.55705 4.66415 4.73658 4.79268 4.80881 4.90721 5.04430 5.19114 5.23556 5.28135 5.29564 5.53808 5.54055 5.56989 5.63342 5.64107 5.76483 5.83272 6.05945 6.30561 6.33100 6.66551 6.71234 6.76135 6.86514 6.93465 7.02885 7.27616 7.28263 7.47042 7.65051 7.92689 7.95239 8.06287 8.29850 8.79940 9.47300 10.95216 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019719 B = 0.002103 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.579547 B =13313.385435 C =14210.148502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.206 4.206 3 C -0.033 4.033 4 C -0.236 4.236 5 C 0.401 3.599 6 N -0.723 5.723 7 C 0.123 3.877 8 C 0.106 3.894 9 N -1.128 6.128 10 S 2.596 3.404 11 O -0.961 6.961 12 O -0.962 6.962 13 C -0.581 4.581 14 C 0.082 3.918 15 C -0.163 4.163 16 C -0.163 4.163 17 C -0.503 4.503 18 H 0.058 0.942 19 C 0.064 3.936 20 N -0.883 5.883 21 Si 0.897 3.103 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.277 1.277 25 N -0.542 5.542 26 C 0.150 3.850 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.408 0.592 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.413 0.587 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.027 0.973 41 H 0.095 0.905 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.095 0.905 45 H 0.028 0.972 46 H 0.263 0.737 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.154 1.438 0.850 25.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.211 4.211 3 C -0.059 4.059 4 C -0.261 4.261 5 C 0.166 3.834 6 N -0.357 5.357 7 C -0.003 4.003 8 C -0.022 4.022 9 N -0.885 5.885 10 S 2.693 3.307 11 O -0.952 6.952 12 O -0.952 6.952 13 C -0.714 4.714 14 C 0.079 3.921 15 C -0.221 4.221 16 C -0.221 4.221 17 C -0.542 4.542 18 H 0.076 0.924 19 C -0.138 4.138 20 N -0.521 5.521 21 Si 0.724 3.276 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.203 1.203 25 N -0.259 5.259 26 C -0.008 4.008 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.244 0.756 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.246 0.754 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.046 0.954 41 H 0.114 0.886 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.113 0.887 45 H 0.047 0.953 46 H 0.073 0.927 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -23.942 1.092 1.752 24.031 hybrid contribution -0.083 -0.083 -1.551 1.556 sum -24.025 1.009 0.201 24.047 Atomic orbital electron populations 1.20558 0.90545 1.02555 1.01977 1.20596 0.97339 0.94066 1.09103 1.21213 0.93217 0.98008 0.93489 1.21426 0.95395 0.97388 1.11913 1.18301 0.85122 0.89363 0.90652 1.44279 1.01656 1.09048 1.80712 1.21510 0.89735 0.86659 1.02423 1.21292 0.90413 0.87107 1.03377 1.55791 1.28999 1.14361 1.89372 1.05625 0.71943 0.75694 0.77389 1.93564 1.79813 1.33919 1.87885 1.93547 1.84724 1.75184 1.41718 1.30518 1.11569 1.12965 1.16390 1.17937 0.83380 0.94791 0.95958 1.22273 1.05751 0.95313 0.98778 1.22274 1.05556 0.98918 0.95367 1.20887 0.92508 1.33223 1.07604 0.92381 1.24942 0.97155 0.95667 0.95995 1.69789 1.05629 1.44859 1.31811 0.86590 0.78165 0.80531 0.82287 1.20292 1.21178 1.20283 1.67147 1.08735 1.29481 1.20490 1.22286 0.88303 0.97455 0.92761 0.91664 0.91685 0.91878 0.85144 0.85067 0.75569 0.91069 0.90930 0.89338 0.90869 0.75444 0.86466 0.86191 0.95380 0.88636 0.94462 0.94487 0.88659 0.95305 0.92661 0.82958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.50 10.03 36.01 0.36 -0.14 16 2 C -0.21 -1.62 5.90 -104.46 -0.62 -2.24 16 3 C -0.03 -0.26 9.85 -39.32 -0.39 -0.65 16 4 C -0.24 -2.14 9.33 -39.22 -0.37 -2.50 16 5 C 0.40 4.26 7.65 -155.03 -1.19 3.08 16 6 N -0.72 -6.78 5.73 -60.42 -0.35 -7.13 16 7 C 0.12 1.01 5.03 -4.04 -0.02 0.99 16 8 C 0.11 1.04 6.25 -4.05 -0.03 1.02 16 9 N -1.13 -13.21 5.89 -10.61 -0.06 -13.27 16 10 S 2.60 44.54 4.49 -107.50 -0.48 44.06 16 11 O -0.96 -19.06 15.70 -57.54 -0.90 -19.96 16 12 O -0.96 -19.08 15.11 -57.54 -0.87 -19.95 16 13 C -0.58 -10.68 5.01 37.16 0.19 -10.49 16 14 C 0.08 1.92 0.52 -155.66 -0.08 1.84 16 15 C -0.16 -3.93 7.78 37.16 0.29 -3.65 16 16 C -0.16 -3.92 7.77 37.15 0.29 -3.63 16 17 C -0.50 -12.94 8.01 -34.44 -0.28 -13.21 16 18 H 0.06 1.45 7.74 -52.48 -0.41 1.04 16 19 C 0.06 1.69 5.15 -17.82 -0.09 1.60 16 20 N -0.88 -23.80 9.35 55.43 0.52 -23.29 16 21 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 25 N -0.54 -6.13 10.39 -12.44 -0.13 -6.26 16 26 C 0.15 1.36 10.85 -17.57 -0.19 1.17 16 27 H 0.06 0.30 8.14 -51.92 -0.42 -0.13 16 28 H 0.06 0.27 8.09 -51.93 -0.42 -0.15 16 29 H 0.06 0.28 8.09 -51.93 -0.42 -0.14 16 30 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 31 H 0.13 0.97 6.71 -52.49 -0.35 0.62 16 32 H 0.41 3.66 8.60 -40.82 -0.35 3.31 16 33 H 0.07 0.50 7.92 -51.93 -0.41 0.09 16 34 H 0.07 0.58 7.93 -51.92 -0.41 0.16 16 35 H 0.09 0.94 7.69 -51.93 -0.40 0.54 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.41 3.88 8.62 -34.47 -0.30 3.58 16 38 H 0.12 1.92 8.14 -51.92 -0.42 1.50 16 39 H 0.12 2.00 8.14 -51.93 -0.42 1.58 16 40 H 0.03 0.64 5.47 -51.93 -0.28 0.35 16 41 H 0.10 2.49 6.07 -51.93 -0.32 2.18 16 42 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 45 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 46 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 47 H 0.15 1.00 8.06 -52.48 -0.42 0.58 16 LS Contribution 384.39 15.07 5.79 5.79 Total: -1.00 -33.00 384.39 -10.80 -43.81 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -7.18 Total: 7.61 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: -2.11 Total: -26.82 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: -0.02 Total: -49.95 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -1.77 Total: -39.92 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 44.54 SS G_CDS: -0.48 Total: 44.06 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.00 -10.80 -43.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921873757.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.216 kcal (2) G-P(sol) polarization free energy of solvation -33.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds