Wall clock time and date at job start Sat Apr 11 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38874 * 120.33853 * 2 1 4 4 C 1.38305 * 118.50806 * 180.02562 * 3 2 1 5 5 C 1.39143 * 119.09428 * 0.02562 * 4 3 2 6 6 N 1.38992 * 119.70430 * 179.97438 * 5 4 3 7 7 C 1.46503 * 120.00445 * 359.97438 * 6 5 4 8 8 C 1.52994 * 109.47623 * 180.02562 * 7 6 5 9 9 N 1.46498 * 109.47283 * 180.02562 * 8 7 6 10 10 S 1.65600 * 120.00056 * 164.99843 * 9 8 7 11 11 O 1.42098 * 104.27665 * 181.06689 * 10 9 8 12 12 O 1.42098 * 104.28038 * 308.92879 * 10 9 8 13 13 C 1.81404 * 104.44769 * 65.00055 * 10 9 8 14 14 C 1.53000 * 109.47090 * 180.02562 * 13 10 9 15 15 C 1.53003 * 109.47103 * 299.99701 * 14 13 10 16 16 C 1.52995 * 109.47449 * 59.99691 * 14 13 10 17 17 C 1.50697 * 109.47214 * 179.97438 * 14 13 10 18 18 H 1.08004 * 120.00076 * 0.02562 * 17 14 13 19 19 C 1.37880 * 120.00199 * 179.97438 * 17 14 13 20 20 N 1.31515 * 119.99798 * 359.97438 * 19 17 14 21 21 Si 1.86801 * 120.00097 * 180.02562 * 19 17 14 22 22 H 1.48497 * 109.47041 * 59.99909 * 21 19 17 23 23 H 1.48503 * 109.47008 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.46847 * 300.00008 * 21 19 17 25 25 N 1.32396 * 120.58609 * 0.02562 * 5 4 3 26 26 C 1.31970 * 121.62524 * 359.97438 * 25 5 4 27 27 H 1.09007 * 109.46936 * 89.99993 * 1 2 3 28 28 H 1.08993 * 109.47747 * 209.99861 * 1 2 3 29 29 H 1.08998 * 109.46982 * 330.00531 * 1 2 3 30 30 H 1.08001 * 120.74845 * 359.97438 * 3 2 1 31 31 H 1.07994 * 120.45256 * 179.72768 * 4 3 2 32 32 H 0.97002 * 119.99871 * 180.02562 * 6 5 4 33 33 H 1.08999 * 109.47011 * 300.00902 * 7 6 5 34 34 H 1.09010 * 109.46557 * 60.00012 * 7 6 5 35 35 H 1.09005 * 109.46709 * 300.00119 * 8 7 6 36 36 H 1.09000 * 109.47098 * 59.99825 * 8 7 6 37 37 H 0.97003 * 119.99886 * 345.00064 * 9 8 7 38 38 H 1.09004 * 109.46966 * 299.99871 * 13 10 9 39 39 H 1.08998 * 109.47218 * 60.00140 * 13 10 9 40 40 H 1.09003 * 109.46843 * 60.00263 * 15 14 13 41 41 H 1.08999 * 109.47390 * 179.97438 * 15 14 13 42 42 H 1.09000 * 109.47130 * 300.00539 * 15 14 13 43 43 H 1.09004 * 109.46965 * 60.00001 * 16 14 13 44 44 H 1.09000 * 109.47582 * 179.97438 * 16 14 13 45 45 H 1.09003 * 109.47320 * 300.00241 * 16 14 13 46 46 H 0.97001 * 119.99807 * 180.02562 * 20 19 17 47 47 H 1.08004 * 119.56936 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2085 1.1986 0.0000 4 6 3.5908 1.1544 -0.0005 5 6 4.2282 -0.0825 -0.0016 6 7 5.6169 -0.1417 -0.0027 7 6 6.4028 1.0947 -0.0033 8 6 7.8938 0.7513 -0.0051 9 7 8.6796 1.9877 -0.0051 10 16 10.2933 1.9431 0.3644 11 8 10.7074 3.3004 0.2900 12 8 10.3527 1.2251 1.5891 13 6 11.0383 0.9760 -0.9774 14 6 12.5465 0.8616 -0.7470 15 6 13.1661 2.2603 -0.7218 16 6 12.8069 0.1643 0.5897 17 6 13.1653 0.0576 -1.8613 18 1 12.5449 -0.3324 -2.6548 19 6 14.5236 -0.1792 -1.8685 20 7 15.2792 0.2970 -0.9032 21 14 15.2907 -1.1752 -3.2502 22 1 15.0376 -0.4987 -4.5476 23 1 16.7546 -1.2864 -3.0265 24 1 14.6897 -2.5329 -3.2743 25 7 3.5237 -1.2034 -0.0026 26 6 2.2040 -1.1913 -0.0021 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 1.6863 2.1440 -0.0004 31 1 4.1676 2.0674 -0.0050 32 1 6.0656 -1.0016 -0.0038 33 1 6.1633 1.6771 -0.8930 34 1 6.1647 1.6769 0.8870 35 1 8.1335 0.1688 0.8845 36 1 8.1315 0.1693 -0.8955 37 1 8.2547 2.8325 -0.2215 38 1 10.5972 -0.0207 -0.9951 39 1 10.8524 1.4725 -1.9297 40 1 12.7184 2.8415 0.0844 41 1 14.2405 2.1789 -0.5572 42 1 12.9806 2.7571 -1.6741 43 1 12.3655 -0.8322 0.5717 44 1 13.8813 0.0824 0.7536 45 1 12.3592 0.7455 1.3959 46 1 16.2348 0.1307 -0.9085 47 1 1.6625 -2.1258 -0.0026 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921873757.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:36 Heat of formation + Delta-G solvation = -62.441579 kcal Electronic energy + Delta-G solvation = -27214.543710 eV Core-core repulsion = 23330.367647 eV Total energy + Delta-G solvation = -3884.176063 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.14830 -38.24546 -38.10739 -37.89924 -36.88500 -35.74640 -33.83882 -33.61987 -32.10003 -29.41320 -28.28323 -27.67013 -27.23824 -26.61112 -24.88817 -23.52205 -22.26975 -21.36389 -20.28230 -18.84966 -18.73766 -17.90609 -17.59191 -17.17667 -16.96960 -16.61202 -16.36768 -15.91524 -15.80670 -15.42295 -15.22952 -14.91484 -14.85926 -14.63122 -14.40358 -13.94733 -13.84364 -13.79630 -13.59875 -13.22498 -13.10111 -13.05106 -12.91143 -12.85395 -12.78986 -12.56439 -12.46280 -12.40258 -12.16288 -12.15271 -11.94505 -11.54524 -11.37280 -10.93785 -10.69931 -10.63265 -10.40201 -10.35167 -10.32749 -8.53908 -8.02225 -6.20513 -0.61549 0.39468 0.54936 1.45198 1.45905 1.52677 1.73502 2.35280 2.44545 2.86857 2.99627 3.20009 3.34090 3.62581 3.79233 4.00447 4.03235 4.06796 4.19730 4.20735 4.28105 4.33735 4.38399 4.49033 4.62504 4.75070 4.84910 4.87649 4.88908 4.94276 4.94855 5.00566 5.01965 5.11011 5.18008 5.23725 5.41036 5.50624 5.52823 5.65717 5.73155 5.99847 6.06723 6.11979 6.14125 6.35460 6.59755 6.84246 7.26568 7.47604 8.97144 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019719 B = 0.002103 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.579547 B =13313.385435 C =14210.148502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.206 4.206 3 C -0.039 4.039 4 C -0.245 4.245 5 C 0.379 3.621 6 N -0.726 5.726 7 C 0.129 3.871 8 C 0.098 3.902 9 N -1.109 6.109 10 S 2.620 3.380 11 O -0.989 6.989 12 O -0.990 6.990 13 C -0.587 4.587 14 C 0.067 3.933 15 C -0.160 4.160 16 C -0.159 4.159 17 C -0.516 4.516 18 H 0.063 0.937 19 C 0.016 3.984 20 N -0.907 5.907 21 Si 0.953 3.047 22 H -0.272 1.272 23 H -0.289 1.289 24 H -0.273 1.273 25 N -0.572 5.572 26 C 0.131 3.869 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.155 0.845 31 H 0.146 0.854 32 H 0.407 0.593 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.427 0.573 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.034 0.966 41 H 0.069 0.931 42 H 0.040 0.960 43 H 0.040 0.960 44 H 0.068 0.932 45 H 0.034 0.966 46 H 0.261 0.739 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.666 1.653 -0.158 27.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.211 4.211 3 C -0.065 4.065 4 C -0.269 4.269 5 C 0.143 3.857 6 N -0.361 5.361 7 C 0.003 3.997 8 C -0.028 4.028 9 N -0.871 5.871 10 S 2.717 3.283 11 O -0.980 6.980 12 O -0.980 6.980 13 C -0.719 4.719 14 C 0.065 3.935 15 C -0.217 4.217 16 C -0.217 4.217 17 C -0.555 4.555 18 H 0.081 0.919 19 C -0.183 4.183 20 N -0.546 5.546 21 Si 0.779 3.221 22 H -0.198 1.198 23 H -0.215 1.215 24 H -0.198 1.198 25 N -0.290 5.290 26 C -0.026 4.026 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.173 0.827 31 H 0.164 0.836 32 H 0.243 0.757 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.263 0.737 38 H 0.156 0.844 39 H 0.157 0.843 40 H 0.052 0.948 41 H 0.088 0.912 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.087 0.913 45 H 0.053 0.947 46 H 0.070 0.930 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -26.465 1.313 0.732 26.508 hybrid contribution 0.580 -0.150 -1.215 1.355 sum -25.885 1.164 -0.483 25.916 Atomic orbital electron populations 1.20604 0.88551 1.03525 1.02735 1.20936 0.98822 0.93669 1.07685 1.21595 0.93068 0.99156 0.92680 1.21671 0.96152 0.97363 1.11751 1.18571 0.85513 0.89916 0.91670 1.44290 1.01487 1.09278 1.81001 1.21468 0.88267 0.86458 1.03457 1.21489 0.91271 0.86145 1.03934 1.55191 1.26973 1.15955 1.88956 1.04559 0.72883 0.74391 0.76448 1.93519 1.81201 1.35182 1.88055 1.93511 1.85713 1.75669 1.43085 1.30456 1.08246 1.15071 1.18142 1.17932 0.86806 0.93804 0.94939 1.22201 1.04200 0.96203 0.99138 1.22198 1.03809 0.99407 0.96287 1.21263 0.92828 1.33168 1.08229 0.91864 1.25676 0.97911 0.96777 0.97946 1.69939 1.05550 1.45874 1.33200 0.85695 0.77089 0.79363 0.79941 1.19764 1.21476 1.19782 1.67118 1.09887 1.30366 1.21580 1.22687 0.87973 0.98878 0.93053 0.90893 0.90830 0.90852 0.82690 0.83616 0.75734 0.89386 0.90545 0.90154 0.89151 0.73664 0.84414 0.84292 0.94772 0.91245 0.94101 0.94116 0.91293 0.94712 0.92996 0.81365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.76 10.03 71.24 0.71 -0.04 16 2 C -0.21 -2.89 5.90 -19.76 -0.12 -3.00 16 3 C -0.04 -0.54 9.85 22.44 0.22 -0.32 16 4 C -0.24 -3.99 9.33 22.50 0.21 -3.78 16 5 C 0.38 7.66 7.65 133.07 1.02 8.68 16 6 N -0.73 -12.72 5.73 -345.07 -1.98 -14.69 16 7 C 0.13 1.83 5.03 86.38 0.43 2.27 16 8 C 0.10 1.72 6.25 86.38 0.54 2.26 16 9 N -1.11 -23.30 5.89 -187.50 -1.10 -24.40 16 10 S 2.62 86.17 4.49 -56.49 -0.25 85.92 16 11 O -0.99 -38.11 15.70 -127.65 -2.00 -40.11 16 12 O -0.99 -38.41 15.11 -127.65 -1.93 -40.34 16 13 C -0.59 -20.55 5.01 71.98 0.36 -20.19 16 14 C 0.07 3.14 0.52 -52.93 -0.03 3.11 16 15 C -0.16 -7.73 7.78 71.98 0.56 -7.17 16 16 C -0.16 -7.70 7.77 71.98 0.56 -7.14 16 17 C -0.52 -26.24 8.01 25.60 0.21 -26.03 16 18 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 19 C 0.02 0.86 5.15 84.66 0.44 1.29 16 20 N -0.91 -49.80 9.35 21.45 0.20 -49.60 16 21 Si 0.95 41.77 29.54 68.60 2.03 43.80 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 23 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 25 N -0.57 -12.67 10.39 -193.26 -2.01 -14.68 16 26 C 0.13 2.26 10.85 84.62 0.92 3.18 16 27 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 28 H 0.07 0.45 8.09 -2.39 -0.02 0.44 16 29 H 0.07 0.44 8.09 -2.39 -0.02 0.42 16 30 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 31 H 0.15 1.80 6.71 -2.91 -0.02 1.78 16 32 H 0.41 7.00 8.60 -92.71 -0.80 6.20 16 33 H 0.09 0.97 7.92 -2.39 -0.02 0.95 16 34 H 0.08 1.03 7.93 -2.38 -0.02 1.02 16 35 H 0.08 1.58 7.69 -2.38 -0.02 1.56 16 36 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.43 6.82 8.62 -96.74 -0.83 5.98 16 38 H 0.14 4.19 8.14 -2.39 -0.02 4.17 16 39 H 0.14 4.29 8.14 -2.39 -0.02 4.27 16 40 H 0.03 1.56 5.47 -2.39 -0.01 1.55 16 41 H 0.07 3.71 6.07 -2.39 -0.01 3.69 16 42 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 44 H 0.07 3.68 6.07 -2.39 -0.01 3.67 16 45 H 0.03 1.59 5.46 -2.39 -0.01 1.58 16 46 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 47 H 0.17 2.07 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -71.09 384.39 -1.65 -72.74 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: -0.64 Total: 28.24 kcal Atomic # 6 Polarization: -52.92 SS G_CDS: 6.03 Total: -46.88 kcal Atomic # 7 Polarization: -98.48 SS G_CDS: -4.89 Total: -103.37 kcal Atomic # 8 Polarization: -76.51 SS G_CDS: -3.93 Total: -80.45 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Atomic # 16 Polarization: 86.17 SS G_CDS: -0.25 Total: 85.92 kcal Total: -71.09 -1.65 -72.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921873757.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.300 kcal (2) G-P(sol) polarization free energy of solvation -71.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds