Wall clock time and date at job start Sat Apr 11 2020 06:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33323 * 126.81223 * 2 1 4 4 N 1.28511 * 109.43612 * 180.02562 * 3 2 1 5 5 N 1.28715 * 110.64253 * 359.97438 * 4 3 2 6 6 H 0.96997 * 126.03636 * 179.97438 * 5 4 3 7 7 C 1.37007 * 126.81295 * 180.30234 * 2 1 3 8 8 C 1.47227 * 127.18894 * 359.97438 * 7 2 1 9 9 O 1.21615 * 120.00339 * 0.15264 * 8 7 2 10 10 N 1.34782 * 119.99866 * 180.14836 * 8 7 2 11 11 C 1.46496 * 120.00014 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.47231 * 185.61178 * 11 10 8 13 13 H 1.09000 * 109.44202 * 299.78849 * 12 11 10 14 14 C 1.50819 * 109.44016 * 179.87049 * 12 11 10 15 15 C 1.38910 * 117.75148 * 49.07465 * 14 12 11 16 16 C 1.37954 * 120.49615 * 179.53526 * 15 14 12 17 17 C 1.38270 * 119.71449 * 359.92999 * 16 15 14 18 18 C 1.37909 * 119.82326 * 0.22027 * 17 16 15 19 19 C 1.37602 * 122.40301 * 228.86603 * 14 12 11 20 20 C 1.50601 * 122.85616 * 0.80019 * 19 14 12 21 21 C 1.52791 * 110.85330 * 340.24748 * 20 19 14 22 22 N 1.46692 * 109.43731 * 59.70759 * 12 11 10 23 23 C 1.36940 * 121.34792 * 344.38559 * 22 12 11 24 24 H 1.08004 * 119.99916 * 36.55504 * 23 22 12 25 25 C 1.38810 * 119.99970 * 216.56333 * 23 22 12 26 26 N 1.31618 * 119.99978 * 15.26352 * 25 23 22 27 27 Si 1.86800 * 119.99773 * 195.26456 * 25 23 22 28 28 H 1.48501 * 109.46988 * 60.00031 * 27 25 23 29 29 H 1.48499 * 109.46891 * 179.97438 * 27 25 23 30 30 H 1.48500 * 109.47251 * 299.99782 * 27 25 23 31 31 H 1.09007 * 109.46805 * 89.97904 * 1 2 3 32 32 H 1.08995 * 109.47574 * 209.98115 * 1 2 3 33 33 H 1.09009 * 109.47169 * 329.98073 * 1 2 3 34 34 H 0.97000 * 119.99792 * 0.02562 * 10 8 7 35 35 H 1.09005 * 109.47116 * 305.61590 * 11 10 8 36 36 H 1.09006 * 109.47229 * 65.61030 * 11 10 8 37 37 H 1.08000 * 119.75907 * 359.47659 * 15 14 12 38 38 H 1.07990 * 120.14334 * 179.97438 * 16 15 14 39 39 H 1.07993 * 120.08671 * 180.19914 * 17 16 15 40 40 H 1.07996 * 119.70350 * 179.97438 * 18 17 16 41 41 H 1.08997 * 109.20119 * 219.89678 * 20 19 14 42 42 H 1.09003 * 109.16103 * 100.57782 * 20 19 14 43 43 H 1.08993 * 109.77688 * 287.84550 * 21 20 19 44 44 H 1.08998 * 109.82252 * 167.06530 * 21 20 19 45 45 H 0.96993 * 119.99807 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3058 1.0674 0.0000 4 7 3.5323 0.6836 -0.0005 5 7 3.6056 -0.6015 -0.0004 6 1 4.4212 -1.1265 -0.0010 7 6 2.3279 -1.0969 -0.0058 8 6 1.9222 -2.5121 -0.0127 9 8 0.7422 -2.8064 -0.0166 10 7 2.8585 -3.4816 -0.0149 11 6 2.4548 -4.8898 -0.0224 12 6 3.6938 -5.7763 0.1176 13 1 4.3691 -5.5905 -0.7175 14 6 3.2771 -7.2258 0.1131 15 6 2.4166 -7.6482 -0.8923 16 6 2.0067 -8.9639 -0.9560 17 6 2.4575 -9.8686 -0.0125 18 6 3.3094 -9.4493 0.9877 19 6 3.7210 -8.1236 1.0566 20 6 4.6437 -7.7368 2.1822 21 6 5.3740 -6.4331 1.8632 22 7 4.3777 -5.4640 1.3772 23 6 4.1004 -4.3177 2.0732 24 1 3.0900 -3.9378 2.1075 25 6 5.1181 -3.6439 2.7344 26 7 6.3757 -3.9166 2.4583 27 14 4.7025 -2.3501 4.0161 28 1 3.9143 -2.9723 5.1101 29 1 5.9574 -1.7828 4.5717 30 1 3.9055 -1.2670 3.3860 31 1 -0.3633 0.0004 -1.0277 32 1 -0.3634 -0.8901 0.5135 33 1 -0.3634 0.8899 0.5142 34 1 3.7996 -3.2468 -0.0115 35 1 1.7773 -5.0780 0.8106 36 1 1.9490 -5.1178 -0.9607 37 1 2.0649 -6.9412 -1.6291 38 1 1.3373 -9.2861 -1.7397 39 1 2.1431 -10.9007 -0.0585 40 1 3.6599 -10.1575 1.7239 41 1 5.3758 -8.5298 2.3342 42 1 4.0609 -7.6073 3.0942 43 1 6.1236 -6.6096 1.0919 44 1 5.8541 -6.0487 2.7630 45 1 7.0868 -3.4460 2.9206 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948947149.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:51 Heat of formation + Delta-G solvation = 107.153161 kcal Electronic energy + Delta-G solvation = -30403.086030 eV Core-core repulsion = 26423.112946 eV Total energy + Delta-G solvation = -3979.973084 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.15382 -39.84785 -38.95242 -36.50508 -34.56523 -33.68629 -32.64809 -32.43249 -31.85029 -30.05571 -29.01983 -27.82527 -26.59021 -25.09416 -23.75415 -22.70991 -22.31339 -21.83053 -20.86613 -20.33502 -19.20477 -18.65245 -16.85503 -16.36289 -16.21917 -16.06950 -15.76048 -15.54175 -14.77461 -14.47482 -14.44102 -14.02844 -13.79034 -13.64182 -13.48926 -13.18534 -12.93895 -12.77993 -12.56702 -12.52754 -12.15031 -12.01300 -11.70562 -11.58192 -11.35907 -11.14015 -11.01103 -10.98915 -10.88229 -10.67651 -10.38626 -10.34734 -10.07080 -9.84259 -9.72274 -9.14036 -8.88037 -8.47614 -8.46472 -8.16570 -6.87532 -6.12117 -3.65182 1.12625 1.67098 1.72085 2.44131 2.68347 3.14550 3.24035 3.28498 3.31472 3.46477 4.07525 4.18007 4.45903 4.81891 4.99491 5.03432 5.07601 5.17967 5.21305 5.25575 5.26904 5.39788 5.51681 5.70151 5.77210 5.82958 5.85144 5.85514 5.99921 6.04292 6.09029 6.15952 6.27174 6.35871 6.39618 6.53930 6.55807 6.69791 6.76796 6.79130 6.82820 6.99386 7.16469 7.27341 7.40820 7.53831 7.80948 8.15905 8.39439 8.45765 8.85784 9.46052 10.11326 10.92988 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011663 B = 0.004463 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.138608 B = 6272.569116 C = 8059.802653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.047 3.953 3 N -0.277 5.277 4 N -0.053 5.053 5 N -0.366 5.366 6 H 0.455 0.545 7 C -0.056 4.056 8 C 0.588 3.412 9 O -0.533 6.533 10 N -0.686 5.686 11 C 0.138 3.862 12 C 0.195 3.805 13 H 0.046 0.954 14 C -0.078 4.078 15 C -0.120 4.120 16 C -0.133 4.133 17 C -0.128 4.128 18 C -0.131 4.131 19 C -0.047 4.047 20 C -0.108 4.108 21 C 0.166 3.834 22 N -0.582 5.582 23 C -0.262 4.262 24 H 0.070 0.930 25 C 0.017 3.983 26 N -0.888 5.888 27 Si 0.887 3.113 28 H -0.279 1.279 29 H -0.287 1.287 30 H -0.282 1.282 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.410 0.590 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.025 0.975 44 H 0.091 0.909 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.999 -4.729 -6.128 9.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.093 4.093 3 N -0.143 5.143 4 N -0.034 5.034 5 N -0.094 5.094 6 H 0.303 0.697 7 C -0.191 4.191 8 C 0.371 3.629 9 O -0.410 6.410 10 N -0.337 5.337 11 C 0.015 3.985 12 C 0.088 3.912 13 H 0.063 0.937 14 C -0.080 4.080 15 C -0.138 4.138 16 C -0.151 4.151 17 C -0.146 4.146 18 C -0.149 4.149 19 C -0.047 4.047 20 C -0.147 4.147 21 C 0.040 3.960 22 N -0.306 5.306 23 C -0.392 4.392 24 H 0.087 0.913 25 C -0.185 4.185 26 N -0.529 5.529 27 Si 0.716 3.284 28 H -0.205 1.205 29 H -0.212 1.212 30 H -0.208 1.208 31 H 0.097 0.903 32 H 0.112 0.888 33 H 0.093 0.907 34 H 0.248 0.752 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.043 0.957 44 H 0.109 0.891 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.963 -3.489 -6.047 8.566 hybrid contribution 0.499 -0.721 0.908 1.262 sum -4.464 -4.210 -5.139 8.004 Atomic orbital electron populations 1.20251 0.85121 1.04170 1.03383 1.22242 0.98459 0.87114 1.01525 1.74867 0.95331 1.26163 1.17976 1.78127 1.15849 0.92594 1.16876 1.45527 1.09284 1.06843 1.47702 0.69692 1.22206 0.84848 0.96857 1.15157 1.16676 0.86071 0.82206 0.77982 1.90773 1.16633 1.81996 1.51612 1.45961 1.09983 1.06117 1.71590 1.21412 0.96944 0.78881 1.01288 1.19553 0.92179 0.88160 0.91307 0.93713 1.20120 0.96824 0.96578 0.94508 1.21156 0.98241 0.95937 0.98497 1.20937 1.01054 0.93680 0.99436 1.20947 0.98756 0.99088 0.95821 1.21208 0.99065 0.95755 0.98855 1.19662 0.97022 0.92282 0.95776 1.21178 0.97359 1.00389 0.95773 1.20809 0.89884 0.85475 0.99804 1.43929 1.45669 1.21032 1.19937 1.19118 0.92749 1.00514 1.26806 0.91291 1.25190 0.95282 0.97770 1.00220 1.69975 0.98173 1.43162 1.41620 0.86628 0.77483 0.81518 0.82790 1.20512 1.21250 1.20798 0.90329 0.88808 0.90697 0.75188 0.90680 0.91834 0.86365 0.86697 0.86862 0.86793 0.92222 0.91130 0.95698 0.89094 0.93105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.94 9.92 36.00 0.36 -0.59 16 2 C 0.05 0.77 7.29 -82.39 -0.60 0.17 16 3 N -0.28 -4.84 12.35 33.51 0.41 -4.42 16 4 N -0.05 -0.91 13.35 60.35 0.81 -0.10 16 5 N -0.37 -5.77 6.98 33.31 0.23 -5.54 16 6 H 0.46 6.25 8.32 -190.33 -1.58 4.67 16 7 C -0.06 -0.93 7.17 -82.33 -0.59 -1.52 16 8 C 0.59 10.20 7.80 -12.61 -0.10 10.10 16 9 O -0.53 -10.10 14.99 5.26 0.08 -10.03 16 10 N -0.69 -11.50 3.46 -61.45 -0.21 -11.71 16 11 C 0.14 2.33 4.13 -4.05 -0.02 2.31 16 12 C 0.20 3.46 3.05 -68.92 -0.21 3.25 16 13 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 14 C -0.08 -1.30 5.43 -104.55 -0.57 -1.87 16 15 C -0.12 -1.72 9.06 -39.44 -0.36 -2.08 16 16 C -0.13 -1.74 10.05 -39.67 -0.40 -2.13 16 17 C -0.13 -1.67 10.05 -39.69 -0.40 -2.07 16 18 C -0.13 -1.89 9.59 -39.43 -0.38 -2.27 16 19 C -0.05 -0.79 5.76 -104.63 -0.60 -1.39 16 20 C -0.11 -1.88 5.86 -28.04 -0.16 -2.04 16 21 C 0.17 3.39 5.59 -3.75 -0.02 3.37 16 22 N -0.58 -12.05 2.89 -166.31 -0.48 -12.53 16 23 C -0.26 -5.90 6.90 -15.06 -0.10 -6.00 16 24 H 0.07 1.61 5.94 -52.48 -0.31 1.30 16 25 C 0.02 0.39 4.96 -17.43 -0.09 0.31 16 26 N -0.89 -21.78 11.56 55.49 0.64 -21.14 16 27 Si 0.89 19.82 29.58 -169.99 -5.03 14.79 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 29 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 30 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.09 1.33 6.63 -51.93 -0.34 0.99 16 33 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 34 H 0.41 6.91 6.56 -40.82 -0.27 6.64 16 35 H 0.07 1.43 7.83 -51.93 -0.41 1.02 16 36 H 0.06 0.95 6.66 -51.93 -0.35 0.61 16 37 H 0.12 1.49 6.72 -52.49 -0.35 1.14 16 38 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.11 1.19 8.06 -52.49 -0.42 0.76 16 40 H 0.11 1.43 8.05 -52.49 -0.42 1.01 16 41 H 0.06 0.91 8.11 -51.93 -0.42 0.49 16 42 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.09 2.09 6.22 -51.93 -0.32 1.77 16 45 H 0.26 6.33 8.31 -40.82 -0.34 5.99 16 LS Contribution 365.26 15.07 5.50 5.50 Total: -1.00 -27.23 365.26 -9.16 -36.39 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -6.87 Total: 11.25 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -4.24 Total: -2.47 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 1.40 Total: -55.45 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.08 Total: -10.03 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.03 Total: 14.79 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -27.23 -9.16 -36.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948947149.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.541 kcal (2) G-P(sol) polarization free energy of solvation -27.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds