Wall clock time and date at job start Sat Apr 11 2020 06:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30898 * 119.95959 * 2 1 4 4 C 1.34158 * 121.16335 * 180.29865 * 3 2 1 5 5 C 1.38705 * 132.25432 * 179.69290 * 4 3 2 6 6 C 1.38844 * 107.67788 * 179.97438 * 5 4 3 7 7 N 1.31289 * 108.98953 * 0.02562 * 6 5 4 8 8 N 1.37273 * 120.90072 * 359.64819 * 4 3 2 9 9 C 1.36069 * 119.97224 * 0.03908 * 8 4 3 10 10 C 1.50705 * 120.55083 * 180.02562 * 9 8 4 11 11 C 1.38062 * 118.89665 * 359.97438 * 9 8 4 12 12 C 1.47599 * 120.50892 * 179.97438 * 11 9 8 13 13 O 1.21586 * 120.00379 * 89.99425 * 12 11 9 14 14 N 1.34785 * 119.99382 * 270.27578 * 12 11 9 15 15 C 1.46496 * 119.99562 * 179.72514 * 14 12 11 16 16 H 1.08998 * 115.52356 * 9.58041 * 15 14 12 17 17 C 1.52999 * 117.44124 * 224.23714 * 15 14 12 18 18 H 1.09005 * 119.54079 * 4.11411 * 17 15 14 19 19 C 1.57698 * 116.11517 * 161.63928 * 17 15 14 20 20 N 1.48143 * 104.67395 * 87.30742 * 19 17 15 21 21 C 1.36934 * 127.83814 * 139.77912 * 20 19 17 22 22 H 1.08001 * 120.00014 * 344.35292 * 21 20 19 23 23 C 1.38814 * 120.00322 * 164.35759 * 21 20 19 24 24 N 1.31627 * 119.99509 * 350.56586 * 23 21 20 25 25 Si 1.86796 * 120.00467 * 170.57354 * 23 21 20 26 26 H 1.48499 * 109.47397 * 89.99586 * 25 23 21 27 27 H 1.48501 * 109.47106 * 209.99912 * 25 23 21 28 28 H 1.48507 * 109.46939 * 329.99618 * 25 23 21 29 29 C 1.48145 * 104.32525 * 319.77504 * 20 19 17 30 30 C 1.53003 * 117.44272 * 154.99583 * 15 14 12 31 31 H 1.09002 * 119.54138 * 355.88239 * 30 15 14 32 32 H 1.08997 * 109.47363 * 270.30951 * 1 2 3 33 33 H 1.09006 * 109.47563 * 30.31013 * 1 2 3 34 34 H 1.09005 * 109.47430 * 150.30550 * 1 2 3 35 35 H 1.08005 * 126.16040 * 359.97438 * 5 4 3 36 36 H 1.08007 * 125.50219 * 179.97438 * 6 5 4 37 37 H 1.09000 * 109.47020 * 269.97465 * 10 9 8 38 38 H 1.08993 * 109.47276 * 29.97383 * 10 9 8 39 39 H 1.09006 * 109.46945 * 149.97836 * 10 9 8 40 40 H 0.96995 * 119.99920 * 359.71858 * 14 12 11 41 41 H 1.09003 * 110.91530 * 328.23220 * 19 17 15 42 42 H 1.08997 * 109.83638 * 205.84287 * 19 17 15 43 43 H 0.96999 * 119.99564 * 180.02562 * 24 23 21 44 44 H 1.08994 * 110.40883 * 280.80367 * 29 20 19 45 45 H 1.09003 * 110.50964 * 158.42020 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1607 1.1341 0.0000 4 6 3.5019 1.1623 -0.0060 5 6 4.4128 2.2083 -0.0129 6 6 5.6873 1.6575 -0.0164 7 7 5.5870 0.3484 -0.0125 8 7 4.2315 -0.0005 -0.0051 9 6 3.5944 -1.2028 0.0012 10 6 4.3824 -2.4874 0.0028 11 6 2.2139 -1.2263 0.0070 12 6 1.4864 -2.5105 0.0133 13 8 1.1912 -3.0369 1.0688 14 7 1.1542 -3.1024 -1.1511 15 6 0.4374 -4.3800 -1.1449 16 1 0.0668 -4.7059 -0.1730 17 6 0.9164 -5.4620 -2.1148 18 1 1.8026 -5.2836 -2.7239 19 6 0.4536 -6.9352 -1.7949 20 7 -0.8625 -7.0683 -2.4617 21 6 -1.3505 -8.1472 -3.1494 22 1 -0.6801 -8.9301 -3.4720 23 6 -2.7067 -8.2346 -3.4321 24 7 -3.5491 -7.3840 -2.8850 25 14 -3.3363 -9.5594 -4.5888 26 1 -3.6735 -10.7776 -3.8095 27 1 -4.5499 -9.0685 -5.2899 28 1 -2.2859 -9.8851 -5.5868 29 6 -1.5311 -5.7693 -2.2157 30 6 -0.4108 -4.7186 -2.3725 31 1 -0.5132 -3.9865 -3.1735 32 1 -0.3634 0.0056 1.0276 33 1 -0.3634 0.8872 -0.5187 34 1 -0.3634 -0.8927 -0.5091 35 1 4.1737 3.2615 -0.0151 36 1 6.6119 2.2158 -0.0222 37 1 4.5685 -2.8008 -1.0244 38 1 5.3329 -2.3299 0.5124 39 1 3.8156 -3.2607 0.5216 40 1 1.3897 -2.6824 -1.9931 41 1 0.3522 -7.0865 -0.7201 42 1 1.1658 -7.6459 -2.2141 43 1 -4.4968 -7.4453 -3.0822 44 1 -1.9424 -5.7386 -1.2068 45 1 -2.3174 -5.5992 -2.9512 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960683916.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:58 Heat of formation + Delta-G solvation = 146.581068 kcal Electronic energy + Delta-G solvation = -28885.894820 eV Core-core repulsion = 24907.631459 eV Total energy + Delta-G solvation = -3978.263361 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.74675 -40.26772 -38.75402 -37.88919 -35.47274 -34.62051 -32.97953 -32.29418 -30.65849 -30.26575 -28.86891 -28.21878 -27.10702 -25.79532 -24.51475 -22.51630 -22.14516 -21.24016 -20.84716 -20.43756 -19.41999 -18.90862 -18.08384 -16.97261 -16.79339 -16.40087 -16.27817 -15.39807 -14.89573 -14.79440 -14.46059 -14.27563 -14.13319 -13.80514 -13.69659 -13.55996 -13.40028 -13.34741 -12.82469 -12.79258 -12.57413 -12.34731 -12.12325 -11.70424 -11.63287 -11.58438 -11.23762 -11.05484 -10.87579 -10.57083 -10.44795 -10.32509 -10.21457 -10.03400 -9.79729 -9.73789 -9.32464 -8.82312 -8.49409 -8.25902 -6.93713 -5.85954 -3.20188 0.06821 0.34322 1.48605 2.18662 2.27994 2.79890 2.98214 3.34535 3.36742 3.40415 3.42095 3.59054 3.71952 4.18570 4.30364 4.41980 4.55977 4.70440 4.77556 4.84889 4.94079 5.03903 5.07002 5.22044 5.24147 5.25759 5.30667 5.36635 5.49077 5.49592 5.54419 5.64215 5.76266 5.78149 5.93423 5.99535 6.10374 6.12821 6.41690 6.60429 6.62355 6.79517 7.00463 7.24415 7.26519 7.30818 7.46086 7.65417 7.93445 8.13786 9.04712 9.67539 10.43583 11.28490 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026684 B = 0.002189 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.084934 B =12789.629151 C =13289.573765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.247 3.753 3 N -0.473 5.473 4 C 0.270 3.730 5 C -0.269 4.269 6 C 0.096 3.904 7 N -0.312 5.312 8 N -0.316 5.316 9 C 0.244 3.756 10 C -0.128 4.128 11 C -0.239 4.239 12 C 0.585 3.415 13 O -0.516 6.516 14 N -0.685 5.685 15 C 0.089 3.911 16 H 0.136 0.864 17 C -0.183 4.183 18 H 0.107 0.893 19 C 0.157 3.843 20 N -0.592 5.592 21 C -0.229 4.229 22 H 0.077 0.923 23 C -0.005 4.005 24 N -0.914 5.914 25 Si 0.913 3.087 26 H -0.287 1.287 27 H -0.289 1.289 28 H -0.280 1.280 29 C 0.185 3.815 30 C -0.177 4.177 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.164 0.836 36 H 0.201 0.799 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.401 0.599 41 H 0.032 0.968 42 H 0.051 0.949 43 H 0.255 0.745 44 H 0.028 0.972 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.080 18.085 4.253 23.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.082 3.918 3 N -0.186 5.186 4 C 0.044 3.956 5 C -0.299 4.299 6 C -0.083 4.083 7 N -0.135 5.135 8 N -0.087 5.087 9 C 0.126 3.874 10 C -0.185 4.185 11 C -0.249 4.249 12 C 0.368 3.632 13 O -0.390 6.390 14 N -0.333 5.333 15 C -0.016 4.016 16 H 0.153 0.847 17 C -0.205 4.205 18 H 0.125 0.875 19 C 0.030 3.970 20 N -0.315 5.315 21 C -0.357 4.357 22 H 0.095 0.905 23 C -0.202 4.202 24 N -0.560 5.560 25 Si 0.743 3.257 26 H -0.214 1.214 27 H -0.215 1.215 28 H -0.206 1.206 29 C 0.059 3.941 30 C -0.198 4.198 31 H 0.121 0.879 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.182 0.818 36 H 0.217 0.783 37 H 0.120 0.880 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.235 0.765 41 H 0.049 0.951 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.045 0.955 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.116 17.423 4.919 23.585 hybrid contribution -0.121 -0.124 -1.089 1.103 sum 14.995 17.300 3.830 23.212 Atomic orbital electron populations 1.20951 0.86242 1.04981 1.04962 1.21894 0.97771 0.85670 0.86452 1.68013 1.03829 1.27878 1.18835 1.20835 0.88126 0.86913 0.99760 1.21011 0.89581 0.98764 1.20561 1.23941 0.99037 0.90961 0.94370 1.77869 0.89102 1.15499 1.31017 1.47054 1.07734 1.05545 1.48371 1.20916 0.90638 0.86633 0.89253 1.21156 1.01084 0.90919 1.05331 1.20372 0.91510 0.96810 1.16246 1.17285 0.78849 0.82599 0.84455 1.90867 1.53617 1.63857 1.30704 1.45451 1.57428 1.22586 1.07867 1.22011 0.98816 0.83048 0.97699 0.84685 1.25123 0.98015 0.94497 1.02865 0.87468 1.21703 0.89115 0.90569 0.95584 1.45114 1.13164 1.12194 1.61059 1.18968 0.91070 0.98268 1.27354 0.90520 1.24905 0.95635 0.99082 1.00571 1.69893 1.02246 1.38553 1.45312 0.86117 0.78251 0.80927 0.80415 1.21388 1.21522 1.20569 1.21074 0.91572 0.81432 1.00026 1.24664 0.96032 1.01389 0.97727 0.87949 0.88371 0.88843 0.89349 0.81844 0.78283 0.88002 0.88536 0.88036 0.76495 0.95068 0.93066 0.93468 0.95458 0.89063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.82 36.01 0.35 -0.66 16 2 C 0.25 2.76 6.87 -81.73 -0.56 2.20 16 3 N -0.47 -5.79 10.37 -8.17 -0.08 -5.87 16 4 C 0.27 3.30 7.91 -155.31 -1.23 2.07 16 5 C -0.27 -2.63 10.91 -39.19 -0.43 -3.05 16 6 C 0.10 0.82 11.95 -17.56 -0.21 0.61 16 7 N -0.31 -3.50 12.49 30.49 0.38 -3.12 16 8 N -0.32 -3.80 3.88 -7.99 -0.03 -3.83 16 9 C 0.24 2.72 6.93 -80.77 -0.56 2.16 16 10 C -0.13 -1.14 9.71 36.01 0.35 -0.79 16 11 C -0.24 -2.74 5.64 -104.88 -0.59 -3.33 16 12 C 0.59 7.36 4.32 -12.44 -0.05 7.31 16 13 O -0.52 -8.36 16.67 5.29 0.09 -8.27 16 14 N -0.69 -7.93 5.56 -54.83 -0.30 -8.23 16 15 C 0.09 1.32 5.92 -67.93 -0.40 0.92 16 16 H 0.14 2.29 7.40 -51.93 -0.38 1.90 16 17 C -0.18 -2.94 7.34 -87.38 -0.64 -3.58 16 18 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 19 C 0.16 3.12 7.10 -0.57 0.00 3.11 16 20 N -0.59 -14.50 3.38 -166.73 -0.56 -15.06 16 21 C -0.23 -6.15 10.35 -15.06 -0.16 -6.31 16 22 H 0.08 2.00 7.85 -52.49 -0.41 1.58 16 23 C 0.00 -0.13 5.40 -17.43 -0.09 -0.22 16 24 N -0.91 -25.98 10.88 55.49 0.60 -25.38 16 25 Si 0.91 21.36 29.56 -169.99 -5.03 16.33 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 29 C 0.19 4.19 5.69 -2.41 -0.01 4.18 16 30 C -0.18 -3.02 6.98 -89.21 -0.62 -3.64 16 31 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 32 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.79 7.13 -51.93 -0.37 0.42 16 35 H 0.16 1.23 8.06 -52.48 -0.42 0.81 16 36 H 0.20 0.82 8.06 -52.48 -0.42 0.40 16 37 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.10 0.82 8.11 -51.93 -0.42 0.40 16 39 H 0.10 0.96 7.12 -51.93 -0.37 0.59 16 40 H 0.40 3.73 8.81 -40.82 -0.36 3.37 16 41 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.09 2.32 6.53 -51.93 -0.34 1.98 16 LS Contribution 379.47 15.07 5.72 5.72 Total: -1.00 -32.97 379.47 -10.10 -43.07 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -6.02 Total: 3.66 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -4.86 Total: 0.99 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: 0.00 Total: -61.50 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.09 Total: -8.27 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.97 -10.10 -43.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960683916.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.653 kcal (2) G-P(sol) polarization free energy of solvation -32.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds