Wall clock time and date at job start Sat Apr 11 2020 06:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38500 * 125.48166 * 2 1 4 4 C 1.39071 * 107.67002 * 179.97438 * 3 2 1 5 5 N 1.33704 * 132.55526 * 180.02562 * 4 3 2 6 6 C 1.31139 * 121.18113 * 179.97438 * 5 4 3 7 7 C 1.50698 * 119.76720 * 180.02562 * 6 5 4 8 8 C 1.40133 * 120.46395 * 359.97438 * 6 5 4 9 9 C 1.36887 * 119.26094 * 0.02562 * 8 6 5 10 10 C 1.47506 * 120.61117 * 179.97438 * 9 8 6 11 11 O 1.21592 * 119.99845 * 0.02562 * 10 9 8 12 12 N 1.34771 * 119.99743 * 180.02562 * 10 9 8 13 13 C 1.46507 * 119.99946 * 180.02562 * 12 10 9 14 14 H 1.09005 * 115.49153 * 9.61657 * 13 12 10 15 15 C 1.57116 * 118.27367 * 223.46583 * 13 12 10 16 16 H 1.09000 * 121.24402 * 3.76883 * 15 13 12 17 17 C 1.54384 * 118.20333 * 162.01462 * 15 13 12 18 18 N 1.48152 * 104.62094 * 86.19484 * 17 15 13 19 19 C 1.36932 * 127.83984 * 140.41307 * 18 17 15 20 20 H 1.07997 * 120.00056 * 195.62204 * 19 18 17 21 21 C 1.38817 * 119.99827 * 15.62261 * 19 18 17 22 22 N 1.31614 * 120.00197 * 9.10103 * 21 19 18 23 23 Si 1.86804 * 119.99863 * 189.11079 * 21 19 18 24 24 H 1.48491 * 109.47430 * 59.99369 * 23 21 19 25 25 H 1.48498 * 109.47092 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46745 * 299.99440 * 23 21 19 27 27 C 1.48150 * 104.32237 * 320.41592 * 18 17 15 28 28 C 1.52991 * 117.44545 * 154.99986 * 13 12 10 29 29 H 1.09006 * 119.53720 * 355.87965 * 28 13 12 30 30 N 1.37286 * 106.80286 * 0.23234 * 4 3 2 31 31 N 1.31533 * 125.48395 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.47185 * 90.00181 * 1 2 3 33 33 H 1.09001 * 109.47174 * 210.00387 * 1 2 3 34 34 H 1.09003 * 109.47141 * 329.99951 * 1 2 3 35 35 H 1.08004 * 126.16622 * 0.02562 * 3 2 1 36 36 H 1.09007 * 109.47141 * 269.98112 * 7 6 5 37 37 H 1.08996 * 109.47068 * 29.97720 * 7 6 5 38 38 H 1.08999 * 109.47337 * 149.98512 * 7 6 5 39 39 H 1.08007 * 120.37136 * 180.02562 * 8 6 5 40 40 H 0.96998 * 120.00451 * 359.97438 * 12 10 9 41 41 H 1.09002 * 110.40883 * 327.41470 * 17 15 13 42 42 H 1.08992 * 110.50938 * 205.03157 * 17 15 13 43 43 H 0.96999 * 120.00326 * 179.97438 * 22 21 19 44 44 H 1.08997 * 110.40934 * 280.80147 * 27 18 17 45 45 H 1.08999 * 110.40302 * 158.36621 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3109 1.1278 0.0000 4 6 3.6349 0.7024 0.0006 5 7 4.7971 1.3635 0.0013 6 6 5.9420 0.7240 0.0023 7 6 7.2331 1.5012 0.0036 8 6 5.9733 -0.6770 0.0031 9 6 4.7943 -1.3725 0.0024 10 6 4.7924 -2.8476 0.0027 11 8 5.8447 -3.4569 0.0041 12 7 3.6244 -3.5199 0.0015 13 6 3.6225 -4.9850 0.0024 14 1 4.5918 -5.4553 0.1684 15 6 2.6186 -5.7285 -0.9504 16 1 1.9813 -5.1769 -1.6416 17 6 2.8846 -7.2143 -1.2744 18 7 2.2407 -7.9595 -0.1677 19 6 1.5313 -9.1284 -0.2429 20 1 0.9061 -9.4347 0.5827 21 6 1.6158 -9.9195 -1.3805 22 7 2.5077 -9.6446 -2.3085 23 14 0.4633 -11.3740 -1.5942 24 1 -0.9426 -10.8960 -1.5932 25 1 0.7553 -12.0517 -2.8828 26 1 0.6616 -12.3310 -0.4762 27 6 2.5384 -7.1532 1.0390 28 6 2.3903 -5.6882 0.5749 29 1 1.5919 -5.0951 1.0210 30 7 3.6108 -0.6702 -0.0044 31 7 2.2705 -1.0710 0.0005 32 1 -0.3633 0.0000 -1.0276 33 1 -0.3633 -0.8900 0.5139 34 1 -0.3633 0.8900 0.5139 35 1 1.9708 2.1529 0.0004 36 1 7.5455 1.6885 -1.0238 37 1 7.0848 2.4511 0.5171 38 1 8.0028 0.9262 0.5183 39 1 6.9171 -1.2021 0.0043 40 1 2.7850 -3.0339 0.0008 41 1 3.9562 -7.4132 -1.2935 42 1 2.4317 -7.4842 -2.2283 43 1 2.5669 -10.1976 -3.1032 44 1 3.5558 -7.3425 1.3811 45 1 1.8227 -7.3754 1.8306 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962619979.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:34 Heat of formation + Delta-G solvation = 150.263549 kcal Electronic energy + Delta-G solvation = -28792.035751 eV Core-core repulsion = 24813.932074 eV Total energy + Delta-G solvation = -3978.103677 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.75393 -39.96167 -38.86494 -38.20452 -34.91502 -34.44559 -32.96417 -32.61233 -30.82337 -30.23684 -28.84427 -27.86045 -27.18543 -26.13178 -24.86754 -22.88199 -22.02504 -20.98436 -20.86631 -20.18992 -19.25342 -18.82249 -17.39010 -17.01486 -16.80864 -16.67727 -16.23283 -15.43011 -14.92294 -14.82953 -14.66180 -14.41466 -14.14687 -13.68790 -13.62115 -13.47385 -13.34479 -13.26712 -12.86600 -12.77965 -12.65396 -12.28137 -12.05115 -11.65992 -11.52218 -11.45999 -11.30358 -11.02745 -10.82605 -10.64030 -10.44928 -10.25649 -10.22870 -10.13372 -9.74855 -9.64520 -9.25585 -8.77440 -8.40943 -8.26715 -6.89138 -5.81050 -3.15730 -0.27016 0.42465 1.51937 2.00987 2.54716 2.65031 3.06837 3.27760 3.38161 3.42562 3.43981 3.59625 3.98642 4.19697 4.34184 4.44526 4.48066 4.69620 4.78463 4.99140 5.05657 5.10834 5.14939 5.18522 5.25711 5.30568 5.33291 5.35213 5.43006 5.54649 5.57730 5.66326 5.77749 5.86564 5.99719 6.01603 6.18692 6.21209 6.48092 6.64396 6.66885 6.86083 7.00664 7.18219 7.33519 7.39698 7.51766 7.69770 7.93288 8.18543 9.08984 9.71768 10.48552 11.33235 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017842 B = 0.002439 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.972380 B =11478.260837 C =12588.788410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.124 3.876 3 C -0.257 4.257 4 C 0.266 3.734 5 N -0.454 5.454 6 C 0.204 3.796 7 C -0.107 4.107 8 C -0.152 4.152 9 C 0.151 3.849 10 C 0.559 3.441 11 O -0.514 6.514 12 N -0.671 5.671 13 C 0.084 3.916 14 H 0.136 0.864 15 C -0.175 4.175 16 H 0.105 0.895 17 C 0.184 3.816 18 N -0.592 5.592 19 C -0.229 4.229 20 H 0.077 0.923 21 C -0.005 4.005 22 N -0.915 5.915 23 Si 0.914 3.086 24 H -0.284 1.284 25 H -0.289 1.289 26 H -0.283 1.283 27 C 0.155 3.845 28 C -0.174 4.174 29 H 0.103 0.897 30 N -0.307 5.307 31 N -0.320 5.320 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.165 0.835 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.182 0.818 40 H 0.416 0.584 41 H 0.027 0.973 42 H 0.093 0.907 43 H 0.256 0.744 44 H 0.028 0.972 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.810 25.905 4.767 26.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.033 4.033 3 C -0.287 4.287 4 C 0.038 3.962 5 N -0.167 5.167 6 C 0.039 3.961 7 C -0.164 4.164 8 C -0.177 4.177 9 C 0.033 3.967 10 C 0.342 3.658 11 O -0.389 6.389 12 N -0.323 5.323 13 C -0.021 4.021 14 H 0.154 0.846 15 C -0.197 4.197 16 H 0.123 0.877 17 C 0.058 3.942 18 N -0.315 5.315 19 C -0.357 4.357 20 H 0.095 0.905 21 C -0.202 4.202 22 N -0.561 5.561 23 Si 0.744 3.256 24 H -0.211 1.211 25 H -0.215 1.215 26 H -0.209 1.209 27 C 0.028 3.972 28 C -0.196 4.196 29 H 0.121 0.879 30 N -0.080 5.080 31 N -0.148 5.148 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.183 0.817 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.199 0.801 40 H 0.258 0.742 41 H 0.045 0.955 42 H 0.111 0.889 43 H 0.066 0.934 44 H 0.046 0.954 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.123 24.795 4.609 25.554 hybrid contribution -1.006 -0.359 -0.189 1.085 sum 3.116 24.436 4.419 25.027 Atomic orbital electron populations 1.20359 0.85105 1.04269 1.03970 1.22262 0.97405 0.89640 0.93975 1.20867 0.87127 1.00376 1.20347 1.20686 0.94708 0.79885 1.00943 1.67800 0.95973 1.37367 1.15593 1.21930 0.94376 0.90610 0.89184 1.20866 0.90534 1.00541 1.04454 1.22018 0.98171 0.94674 1.02835 1.20860 0.83043 0.93392 0.99402 1.17435 0.85206 0.84428 0.78780 1.90873 1.30843 1.67378 1.49822 1.45663 1.08907 1.07284 1.70460 1.22616 0.97047 0.77200 1.05246 0.84604 1.25402 1.01454 0.99877 0.92939 0.87736 1.21089 0.96118 0.82480 0.94465 1.45168 1.61873 1.23788 1.00698 1.18943 1.18804 0.95485 1.02468 0.90534 1.24914 0.98648 0.98526 0.98127 1.69882 1.34917 1.40742 1.10520 0.86175 0.80322 0.81965 0.77139 1.21070 1.21523 1.20940 1.21148 0.98052 0.86827 0.91161 1.24318 0.98106 0.98716 0.98415 0.87889 1.47301 1.05663 1.07372 1.47668 1.77280 0.82521 1.21969 1.33021 0.89464 0.89986 0.89551 0.81734 0.88828 0.89325 0.89175 0.80092 0.74244 0.95524 0.88923 0.93426 0.95401 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.43 36.00 0.38 -0.16 16 2 C 0.12 1.33 7.15 -82.63 -0.59 0.74 16 3 C -0.26 -2.74 10.82 -39.18 -0.42 -3.16 16 4 C 0.27 3.31 7.93 -155.56 -1.23 2.07 16 5 N -0.45 -5.06 10.36 -8.48 -0.09 -5.15 16 6 C 0.20 1.80 6.82 -82.18 -0.56 1.24 16 7 C -0.11 -0.48 10.18 36.00 0.37 -0.11 16 8 C -0.15 -1.52 9.27 -39.36 -0.37 -1.88 16 9 C 0.15 1.98 6.82 -81.98 -0.56 1.42 16 10 C 0.56 8.71 7.79 -12.49 -0.10 8.61 16 11 O -0.51 -9.00 15.92 5.28 0.08 -8.91 16 12 N -0.67 -10.73 5.60 -52.69 -0.30 -11.03 16 13 C 0.08 1.51 6.16 -65.70 -0.40 1.11 16 14 H 0.14 2.61 7.40 -51.93 -0.38 2.23 16 15 C -0.18 -3.48 7.27 -86.99 -0.63 -4.12 16 16 H 0.10 1.98 8.14 -51.93 -0.42 1.56 16 17 C 0.18 4.52 5.73 -2.41 -0.01 4.50 16 18 N -0.59 -15.29 3.38 -168.86 -0.57 -15.86 16 19 C -0.23 -6.39 10.35 -15.06 -0.16 -6.54 16 20 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 21 C 0.00 -0.14 5.40 -17.43 -0.09 -0.23 16 22 N -0.91 -26.90 10.86 55.49 0.60 -26.30 16 23 Si 0.91 21.94 29.56 -169.99 -5.03 16.91 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 C 0.15 3.30 7.03 -2.41 -0.02 3.28 16 28 C -0.17 -3.22 6.91 -89.22 -0.62 -3.84 16 29 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 30 N -0.31 -4.11 3.94 -8.87 -0.03 -4.14 16 31 N -0.32 -4.24 9.92 33.51 0.33 -3.91 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.17 1.33 8.06 -52.48 -0.42 0.91 16 36 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.09 0.24 8.09 -51.93 -0.42 -0.18 16 39 H 0.18 1.44 7.65 -52.48 -0.40 1.04 16 40 H 0.42 6.35 5.85 -40.82 -0.24 6.11 16 41 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 2.51 6.51 -51.93 -0.34 2.18 16 43 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 378.06 15.07 5.70 5.70 Total: -1.00 -33.77 378.06 -10.30 -44.07 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -5.98 Total: 5.68 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: -5.02 Total: 2.94 kcal Atomic # 7 Polarization: -66.33 SS G_CDS: -0.05 Total: -66.39 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.08 Total: -8.91 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.77 -10.30 -44.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962619979.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.332 kcal (2) G-P(sol) polarization free energy of solvation -33.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds