Wall clock time and date at job start Sat Apr 11 2020 06:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46510 * 109.45810 * 2 1 4 4 C 1.34767 * 119.99890 * 60.03016 * 3 2 1 5 5 O 1.21491 * 120.00007 * 359.97438 * 4 3 2 6 6 C 1.48435 * 120.00407 * 179.97438 * 4 3 2 7 7 N 1.33495 * 119.21447 * 0.02562 * 6 4 3 8 8 N 1.28914 * 122.02407 * 179.97438 * 7 6 4 9 9 C 1.33816 * 119.74671 * 0.02562 * 8 7 6 10 10 C 1.40333 * 121.78333 * 179.97438 * 9 8 7 11 11 C 1.36192 * 119.62449 * 180.02562 * 10 9 8 12 12 C 1.39453 * 121.07148 * 359.97438 * 11 10 9 13 13 C 1.36134 * 121.01311 * 359.97438 * 12 11 10 14 14 C 1.40514 * 119.56123 * 359.97438 * 13 12 11 15 15 N 1.32053 * 119.22389 * 179.97438 * 6 4 3 16 16 C 1.53033 * 109.45007 * 119.96559 * 2 1 3 17 17 C 1.53191 * 109.31607 * 181.38049 * 16 2 1 18 18 N 1.46931 * 108.77262 * 305.36651 * 17 16 2 19 19 C 1.36937 * 120.62965 * 233.62985 * 18 17 16 20 20 H 1.07997 * 120.00369 * 27.65998 * 19 18 17 21 21 C 1.38818 * 120.00087 * 207.67157 * 19 18 17 22 22 N 1.31619 * 119.99907 * 17.35387 * 21 19 18 23 23 Si 1.86796 * 119.99869 * 197.36270 * 21 19 18 24 24 H 1.48497 * 109.47076 * 89.99661 * 23 21 19 25 25 H 1.48503 * 109.46724 * 209.99209 * 23 21 19 26 26 H 1.48503 * 109.47273 * 329.99331 * 23 21 19 27 27 C 1.46926 * 118.74128 * 53.61052 * 18 17 16 28 28 C 1.53040 * 109.46218 * 240.03056 * 2 1 3 29 29 H 1.09006 * 109.47161 * 59.99718 * 1 2 3 30 30 H 1.08996 * 109.47201 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47343 * 299.99865 * 1 2 3 32 32 H 0.96998 * 119.99956 * 240.02169 * 3 2 1 33 33 H 1.08000 * 120.18916 * 359.97438 * 10 9 8 34 34 H 1.07996 * 119.46600 * 179.97438 * 11 10 9 35 35 H 1.07991 * 119.49099 * 179.71947 * 12 11 10 36 36 H 1.07997 * 120.22203 * 179.97438 * 13 12 11 37 37 H 1.09004 * 109.50195 * 301.33301 * 16 2 1 38 38 H 1.09002 * 109.50051 * 61.42831 * 16 2 1 39 39 H 1.08996 * 109.59167 * 185.58133 * 17 16 2 40 40 H 1.09002 * 109.58684 * 65.15134 * 17 16 2 41 41 H 0.97003 * 120.00128 * 180.02562 * 22 21 19 42 42 H 1.08996 * 109.58820 * 186.60195 * 27 18 17 43 43 H 1.09002 * 109.70437 * 66.24259 * 27 18 17 44 44 H 1.09001 * 109.49955 * 298.58084 * 28 2 1 45 45 H 1.09001 * 109.49853 * 58.64086 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3814 0.0000 4 6 1.6927 2.2110 1.0111 5 8 0.9944 1.8134 1.9223 6 6 2.1876 3.6104 1.0115 7 7 2.9535 4.0310 0.0022 8 7 3.4121 5.2345 -0.0525 9 6 3.1211 6.1010 0.9249 10 6 3.5978 7.4207 0.9089 11 6 3.2749 8.2656 1.9271 12 6 2.4759 7.8413 2.9884 13 6 1.9939 6.5692 3.0386 14 6 2.3048 5.6688 2.0057 15 7 1.8591 4.4101 2.0096 16 6 2.0396 -0.7207 1.2501 17 6 3.5711 -0.6889 1.2645 18 7 4.0676 -1.2492 0.0003 19 6 4.9753 -2.2746 0.0004 20 1 5.0079 -2.9668 0.8287 21 6 5.8537 -2.4241 -1.0640 22 7 6.0602 -1.4224 -1.8925 23 14 6.7422 -4.0470 -1.3208 24 1 5.9246 -4.9262 -2.1946 25 1 8.0571 -3.7951 -1.9634 26 1 6.9515 -4.7098 -0.0084 27 6 3.5714 -0.6889 -1.2641 28 6 2.0399 -0.7208 -1.2500 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 2.5754 1.6989 -0.7277 33 1 4.2180 7.7643 0.0942 34 1 3.6435 9.2806 1.9124 35 1 2.2394 8.5313 3.7848 36 1 1.3765 6.2540 3.8668 37 1 1.6569 -0.2207 2.1399 38 1 1.6974 -1.7556 1.2384 39 1 3.9412 -1.2848 2.0987 40 1 3.9142 0.3406 1.3676 41 1 6.6738 -1.5270 -2.6366 42 1 3.9417 -1.2849 -2.0981 43 1 3.9145 0.3403 -1.3696 44 1 1.6976 -1.7556 -1.2384 45 1 1.6569 -0.2211 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045503530.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:59 Heat of formation + Delta-G solvation = 95.144440 kcal Electronic energy + Delta-G solvation = -29781.948428 eV Core-core repulsion = 25801.454607 eV Total energy + Delta-G solvation = -3980.493821 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.27599 -40.13079 -38.44444 -37.35840 -35.50422 -34.40872 -32.79685 -31.76032 -31.31181 -30.64858 -29.88544 -27.41000 -26.72162 -25.82452 -24.06074 -22.96139 -22.39737 -22.08389 -20.75912 -19.64370 -19.28631 -18.57926 -17.71233 -16.74542 -16.48084 -16.29350 -15.40340 -15.00871 -14.85268 -14.73146 -14.65095 -14.12845 -13.80778 -13.39460 -13.32294 -13.21741 -13.08290 -12.86059 -12.68310 -12.45255 -12.40069 -12.19302 -11.84323 -11.74795 -11.63319 -11.30236 -11.19776 -10.91986 -10.71441 -10.33258 -10.29608 -10.06217 -9.98393 -9.84526 -9.64964 -9.59205 -9.23715 -9.15827 -8.70405 -8.43017 -6.63342 -5.75598 -3.17207 -0.60736 -0.18419 1.26598 2.01054 2.69490 2.94543 3.20945 3.40181 3.47207 3.48420 3.55018 3.61378 3.88835 4.14683 4.25179 4.51184 4.52986 4.70535 4.79836 5.07053 5.27216 5.29830 5.37859 5.42997 5.47560 5.49480 5.52474 5.62665 5.72430 5.97872 6.03358 6.05829 6.19348 6.28036 6.35083 6.41124 6.53470 6.56125 6.66360 6.70331 6.82347 6.94562 7.04999 7.33204 7.63852 7.69575 7.83320 8.00642 8.30717 8.48085 9.24622 9.88029 10.45231 11.32790 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015619 B = 0.002954 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.235146 B = 9476.023091 C =10467.429255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.183 3.817 3 N -0.681 5.681 4 C 0.587 3.413 5 O -0.503 6.503 6 C 0.224 3.776 7 N -0.228 5.228 8 N -0.137 5.137 9 C 0.016 3.984 10 C -0.065 4.065 11 C -0.094 4.094 12 C -0.074 4.074 13 C -0.087 4.087 14 C 0.132 3.868 15 N -0.397 5.397 16 C -0.144 4.144 17 C 0.149 3.851 18 N -0.590 5.590 19 C -0.250 4.250 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.902 5.902 23 Si 0.902 3.098 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.280 1.280 27 C 0.170 3.830 28 C -0.145 4.145 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.413 0.587 33 H 0.151 0.849 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.151 0.849 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.052 0.948 40 H 0.012 0.988 41 H 0.253 0.747 42 H 0.091 0.909 43 H 0.019 0.981 44 H 0.075 0.925 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.438 19.903 5.865 22.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.099 3.901 3 N -0.334 5.334 4 C 0.367 3.633 5 O -0.376 6.376 6 C -0.048 4.048 7 N -0.089 5.089 8 N -0.001 5.001 9 C -0.117 4.117 10 C -0.087 4.087 11 C -0.114 4.114 12 C -0.096 4.096 13 C -0.106 4.106 14 C -0.008 4.008 15 N -0.119 5.119 16 C -0.184 4.184 17 C 0.023 3.977 18 N -0.313 5.313 19 C -0.380 4.380 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.547 5.547 23 Si 0.732 3.268 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.205 1.205 27 C 0.043 3.957 28 C -0.185 4.185 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.250 0.750 33 H 0.169 0.831 34 H 0.162 0.838 35 H 0.163 0.837 36 H 0.169 0.831 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.030 0.970 41 H 0.063 0.937 42 H 0.109 0.891 43 H 0.037 0.963 44 H 0.093 0.907 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.679 18.818 5.732 21.923 hybrid contribution 0.719 0.004 0.050 0.721 sum -8.960 18.821 5.782 21.632 Atomic orbital electron populations 1.22245 0.95034 1.02275 1.02478 1.20435 0.92858 0.79006 0.97832 1.46033 1.51573 1.11825 1.23937 1.16934 0.81244 0.81651 0.83513 1.90741 1.36893 1.74539 1.35419 1.24677 0.93864 0.97790 0.88519 1.74043 1.06139 1.07941 1.20800 1.74544 1.10718 0.96184 1.18641 1.21047 0.98490 0.97599 0.94517 1.20834 0.98464 0.89719 0.99644 1.21228 0.96550 1.00617 0.93042 1.21248 0.94722 0.95558 0.98097 1.20928 1.00082 0.92174 0.97419 1.19771 0.94271 0.91720 0.94999 1.69116 1.17652 1.02033 1.23087 1.22425 0.99127 0.99891 0.96968 1.20836 0.90794 0.96061 0.90006 1.44043 1.48308 1.39587 0.99371 1.19205 1.09808 1.02870 1.06128 0.91694 1.25026 0.97221 0.97410 1.00038 1.70031 1.37808 1.28881 1.17935 0.86296 0.78782 0.83794 0.77940 1.21476 1.21847 1.20523 1.20776 0.86735 0.97383 0.90760 1.22536 1.01603 1.00030 0.94329 0.93085 0.91758 0.90916 0.74998 0.83097 0.83768 0.83737 0.83114 0.90874 0.91332 0.92955 0.96964 0.93669 0.89092 0.96296 0.90662 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 8.40 37.16 0.31 -2.17 16 2 C 0.18 3.20 0.66 -131.78 -0.09 3.11 16 3 N -0.68 -11.86 4.09 -48.32 -0.20 -12.06 16 4 C 0.59 10.53 7.27 -12.06 -0.09 10.44 16 5 O -0.50 -9.80 13.08 5.37 0.07 -9.73 16 6 C 0.22 3.79 7.65 -156.57 -1.20 2.60 16 7 N -0.23 -3.77 10.72 32.10 0.34 -3.43 16 8 N -0.14 -2.04 11.68 32.28 0.38 -1.66 16 9 C 0.02 0.20 6.68 -84.71 -0.57 -0.37 16 10 C -0.06 -0.51 10.00 -39.53 -0.40 -0.90 16 11 C -0.09 -0.47 9.95 -39.86 -0.40 -0.87 16 12 C -0.07 -0.38 9.95 -39.89 -0.40 -0.78 16 13 C -0.09 -0.73 10.01 -39.48 -0.40 -1.13 16 14 C 0.13 1.66 6.61 -84.77 -0.56 1.10 16 15 N -0.40 -6.28 10.22 -8.99 -0.09 -6.37 16 16 C -0.14 -2.75 4.67 -26.62 -0.12 -2.87 16 17 C 0.15 3.33 6.26 -3.71 -0.02 3.31 16 18 N -0.59 -14.82 2.99 -172.32 -0.52 -15.33 16 19 C -0.25 -6.91 9.59 -15.06 -0.14 -7.06 16 20 H 0.07 1.78 7.89 -52.49 -0.41 1.37 16 21 C 0.00 0.04 4.91 -17.43 -0.09 -0.04 16 22 N -0.90 -26.05 11.19 55.49 0.62 -25.42 16 23 Si 0.90 21.82 29.59 -169.99 -5.03 16.79 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 C 0.17 3.92 5.04 -3.71 -0.02 3.90 16 28 C -0.15 -2.67 4.96 -26.61 -0.13 -2.80 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 1.19 6.17 -51.93 -0.32 0.87 16 32 H 0.41 7.17 6.57 -40.82 -0.27 6.90 16 33 H 0.15 0.89 8.06 -52.49 -0.42 0.46 16 34 H 0.14 0.24 8.06 -52.49 -0.42 -0.18 16 35 H 0.14 0.26 8.06 -52.49 -0.42 -0.16 16 36 H 0.15 1.07 8.06 -52.49 -0.42 0.64 16 37 H 0.07 1.41 6.20 -51.93 -0.32 1.09 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.05 1.16 7.93 -51.93 -0.41 0.75 16 40 H 0.01 0.29 7.74 -51.93 -0.40 -0.11 16 41 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.09 2.37 6.03 -51.93 -0.31 2.05 16 43 H 0.02 0.46 6.94 -51.93 -0.36 0.10 16 44 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 45 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 364.18 15.07 5.49 5.49 Total: -1.00 -33.16 364.18 -8.98 -42.14 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -5.75 Total: 4.11 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: -4.30 Total: 5.47 kcal Atomic # 7 Polarization: -64.81 SS G_CDS: 0.54 Total: -64.27 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.07 Total: -9.73 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.16 -8.98 -42.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045503530.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.289 kcal (2) G-P(sol) polarization free energy of solvation -33.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds