Wall clock time and date at job start Sat Apr 11 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 110.63762 * 2 1 4 4 C 1.34778 * 120.00121 * 56.85752 * 3 2 1 5 5 O 1.21577 * 119.99718 * 0.02562 * 4 3 2 6 6 C 1.47677 * 120.00197 * 179.97438 * 4 3 2 7 7 C 1.39699 * 120.08473 * 180.02562 * 6 4 3 8 8 C 1.37739 * 119.92326 * 180.02562 * 7 6 4 9 9 C 1.39027 * 120.07953 * 359.97438 * 8 7 6 10 10 N 1.39933 * 119.91897 * 179.97438 * 9 8 7 11 11 C 1.36315 * 126.86568 * 180.02562 * 10 9 8 12 12 C 1.34963 * 106.77603 * 179.73704 * 11 10 9 13 13 N 1.33372 * 109.01972 * 0.02562 * 12 11 10 14 14 N 1.28767 * 109.92441 * 359.97438 * 13 12 11 15 15 C 1.39027 * 120.15682 * 0.26024 * 9 8 7 16 16 C 1.37737 * 120.08357 * 359.48350 * 15 9 8 17 17 C 1.55156 * 110.72044 * 236.85988 * 2 1 3 18 18 C 1.54909 * 101.57944 * 205.95772 * 17 2 1 19 19 N 1.47425 * 104.83329 * 37.00612 * 18 17 2 20 20 C 1.36935 * 125.64570 * 155.90456 * 19 18 17 21 21 H 1.07997 * 120.00264 * 179.97438 * 20 19 18 22 22 C 1.38813 * 120.00070 * 359.97438 * 20 19 18 23 23 N 1.31614 * 120.00196 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99982 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46825 * 59.99595 * 24 22 20 26 26 H 1.48496 * 109.46959 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.46771 * 299.99679 * 24 22 20 28 28 C 1.47022 * 108.70397 * 335.87320 * 19 18 17 29 29 H 1.09000 * 109.47071 * 60.70225 * 1 2 3 30 30 H 1.08997 * 109.46957 * 180.70174 * 1 2 3 31 31 H 1.09000 * 109.47284 * 300.69696 * 1 2 3 32 32 H 0.96998 * 119.99811 * 236.85664 * 3 2 1 33 33 H 1.08004 * 120.03132 * 0.02562 * 7 6 4 34 34 H 1.07999 * 119.95980 * 179.97438 * 8 7 6 35 35 H 1.08001 * 126.60863 * 359.76874 * 11 10 9 36 36 H 1.08001 * 125.48720 * 179.97438 * 12 11 10 37 37 H 1.08000 * 119.95604 * 179.71876 * 15 9 8 38 38 H 1.08001 * 120.04352 * 180.25312 * 16 15 9 39 39 H 1.08999 * 111.00227 * 324.02738 * 17 2 1 40 40 H 1.08997 * 111.00371 * 87.88004 * 17 2 1 41 41 H 1.08997 * 110.36942 * 155.85121 * 18 17 2 42 42 H 1.09004 * 110.36336 * 278.16607 * 18 17 2 43 43 H 0.96999 * 120.00385 * 180.02562 * 23 22 20 44 44 H 1.08995 * 109.88146 * 241.64169 * 28 19 18 45 45 H 1.08999 * 109.87837 * 120.47203 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3710 0.0000 4 6 1.6867 2.2266 0.9773 5 8 0.9342 1.8604 1.8592 6 6 2.2077 3.6084 0.9776 7 6 1.8364 4.4965 1.9901 8 6 2.3239 5.7848 1.9869 9 6 3.1848 6.2015 0.9779 10 7 3.6776 7.5112 0.9776 11 6 4.5234 8.0666 0.0641 12 6 4.7280 9.3439 0.4488 13 7 4.0348 9.5784 1.5639 14 7 3.3953 8.5171 1.9144 15 6 3.5526 5.3219 -0.0340 16 6 3.0733 4.0306 -0.0343 17 6 2.0790 -0.7934 -1.2151 18 6 3.4652 -1.2446 -0.6913 19 7 3.2494 -1.5469 0.7354 20 6 4.0125 -2.3917 1.4964 21 1 3.7714 -2.5468 2.5377 22 6 5.0958 -3.0490 0.9295 23 7 5.3893 -2.8605 -0.3395 24 14 6.1371 -4.2009 1.9679 25 1 5.2864 -5.2987 2.4936 26 1 7.2238 -4.7736 1.1334 27 1 6.7286 -3.4466 3.1020 28 6 2.0798 -0.7905 1.2059 29 1 -0.3633 0.5029 -0.8962 30 1 -0.3633 -1.0276 0.0126 31 1 -0.3634 0.5246 0.8837 32 1 2.6471 1.6630 -0.7034 33 1 1.1680 4.1733 2.7744 34 1 2.0369 6.4720 2.7690 35 1 4.9475 7.5786 -0.8010 36 1 5.3530 10.0605 -0.0633 37 1 4.2180 5.6504 -0.8187 38 1 3.3626 3.3467 -0.8185 39 1 1.4470 -1.6529 -1.4383 40 1 2.1820 -0.1489 -2.0882 41 1 3.7994 -2.1363 -1.2217 42 1 4.1930 -0.4408 -0.8030 43 1 6.1461 -3.3200 -0.7358 44 1 2.3775 -0.1015 1.9963 45 1 1.3190 -1.4773 1.5770 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046765310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:45 Heat of formation + Delta-G solvation = 132.717097 kcal Electronic energy + Delta-G solvation = -28835.098753 eV Core-core repulsion = 24856.234205 eV Total energy + Delta-G solvation = -3978.864548 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.59280 -40.51112 -39.12118 -37.30402 -34.80623 -34.14693 -32.35907 -31.60427 -31.00243 -30.45735 -29.49547 -28.71053 -25.75247 -25.28021 -23.88112 -23.66338 -22.50254 -21.56974 -20.86423 -20.36871 -19.20111 -18.93857 -17.93040 -16.84760 -16.25285 -15.99221 -15.71948 -15.37253 -15.04877 -14.84489 -14.74661 -14.63399 -14.05621 -13.98750 -13.76657 -13.37197 -13.35911 -12.88867 -12.78914 -12.33520 -12.29467 -12.07612 -11.79005 -11.64871 -11.60946 -11.44388 -11.40224 -10.98343 -10.87369 -10.49989 -10.39790 -10.15254 -10.05866 -9.85076 -9.71279 -9.54988 -9.42222 -8.91092 -8.71819 -8.65924 -6.85839 -5.69016 -3.09449 -0.08585 0.85380 1.25108 1.68225 2.12881 2.75154 3.22515 3.39200 3.43195 3.44602 3.59665 3.92925 4.01933 4.32346 4.44696 4.46294 4.55753 4.63024 4.76796 4.83174 5.04053 5.09953 5.14878 5.33402 5.44087 5.47659 5.51484 5.57673 5.66493 5.69223 5.83802 5.94744 5.99612 6.07316 6.11948 6.16696 6.28995 6.39161 6.43969 6.46249 6.63902 6.76548 7.04414 7.38072 7.58991 7.68297 7.69777 7.79183 8.30206 8.35327 9.19443 9.80041 10.44362 11.35339 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014209 B = 0.002465 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.127065 B =11357.352033 C =12293.744773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.159 3.841 3 N -0.700 5.700 4 C 0.557 3.443 5 O -0.529 6.529 6 C -0.121 4.121 7 C -0.038 4.038 8 C -0.115 4.115 9 C 0.154 3.846 10 N -0.317 5.317 11 C 0.024 3.976 12 C -0.073 4.073 13 N -0.232 5.232 14 N -0.061 5.061 15 C -0.132 4.132 16 C -0.062 4.062 17 C -0.147 4.147 18 C 0.152 3.848 19 N -0.604 5.604 20 C -0.219 4.219 21 H 0.076 0.924 22 C -0.012 4.012 23 N -0.925 5.925 24 Si 0.914 3.086 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.286 1.286 28 C 0.137 3.863 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.396 0.604 33 H 0.151 0.849 34 H 0.146 0.854 35 H 0.198 0.802 36 H 0.191 0.809 37 H 0.139 0.861 38 H 0.142 0.858 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.109 0.891 42 H 0.010 0.990 43 H 0.252 0.748 44 H 0.031 0.969 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.561 19.230 -5.688 20.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.074 3.926 3 N -0.351 5.351 4 C 0.343 3.657 5 O -0.407 6.407 6 C -0.125 4.125 7 C -0.058 4.058 8 C -0.135 4.135 9 C 0.061 3.939 10 N -0.099 5.099 11 C -0.126 4.126 12 C -0.228 4.228 13 N -0.102 5.102 14 N -0.039 5.039 15 C -0.153 4.153 16 C -0.081 4.081 17 C -0.186 4.186 18 C 0.027 3.973 19 N -0.330 5.330 20 C -0.347 4.347 21 H 0.094 0.906 22 C -0.207 4.207 23 N -0.574 5.574 24 Si 0.745 3.255 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.213 1.213 28 C 0.010 3.990 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.232 0.768 33 H 0.169 0.831 34 H 0.164 0.836 35 H 0.214 0.786 36 H 0.208 0.792 37 H 0.157 0.843 38 H 0.160 0.840 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.126 0.874 42 H 0.027 0.973 43 H 0.063 0.937 44 H 0.049 0.951 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -5.655 19.210 -3.788 20.380 hybrid contribution 1.653 -0.678 -0.857 1.982 sum -4.002 18.532 -4.645 19.520 Atomic orbital electron populations 1.22073 0.93965 1.02454 1.02571 1.21400 0.93206 0.79917 0.98117 1.45930 1.49179 1.12196 1.27758 1.18006 0.81161 0.84436 0.82074 1.90751 1.35968 1.77773 1.36217 1.20291 1.00042 0.95076 0.97062 1.21235 0.96605 0.90942 0.96994 1.20912 0.97279 0.97000 0.98308 1.17754 0.98013 0.80350 0.97784 1.48043 1.32319 1.09998 1.19539 1.23629 0.96081 0.95559 0.97321 1.23289 1.06293 0.96226 0.96983 1.74362 1.05984 1.18199 1.11631 1.82155 1.20512 0.90221 1.11024 1.20767 1.02720 0.93405 0.98439 1.21214 0.94448 0.94876 0.97554 1.23376 1.01326 0.98912 0.94988 1.21946 0.89284 1.00660 0.85375 1.44489 1.30593 1.50510 1.07381 1.19049 1.05999 1.16702 0.92956 0.90576 1.24754 0.98761 1.00727 0.96459 1.69751 1.30231 1.46608 1.10856 0.86147 0.79763 0.80621 0.78972 1.21127 1.21580 1.21264 1.21603 0.90353 0.93199 0.93818 0.93139 0.91672 0.90464 0.76815 0.83149 0.83617 0.78555 0.79173 0.84345 0.84041 0.90361 0.91884 0.87359 0.97255 0.93735 0.95116 0.95016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 8.38 37.16 0.31 -1.97 16 2 C 0.16 2.69 0.81 -129.98 -0.10 2.58 16 3 N -0.70 -10.19 5.09 -46.89 -0.24 -10.43 16 4 C 0.56 8.32 6.98 -12.40 -0.09 8.24 16 5 O -0.53 -9.48 13.33 5.30 0.07 -9.41 16 6 C -0.12 -1.42 5.88 -104.95 -0.62 -2.04 16 7 C -0.04 -0.42 9.58 -39.22 -0.38 -0.80 16 8 C -0.11 -1.17 9.66 -39.47 -0.38 -1.55 16 9 C 0.15 1.48 6.70 -83.57 -0.56 0.92 16 10 N -0.32 -3.15 3.85 -10.50 -0.04 -3.19 16 11 C 0.02 0.16 10.92 -16.72 -0.18 -0.02 16 12 C -0.07 -0.56 11.86 -18.05 -0.21 -0.77 16 13 N -0.23 -2.66 12.33 30.09 0.37 -2.29 16 14 N -0.06 -0.75 13.15 60.35 0.79 0.05 16 15 C -0.13 -1.05 9.46 -39.47 -0.37 -1.42 16 16 C -0.06 -0.56 9.53 -39.22 -0.37 -0.93 16 17 C -0.15 -2.51 6.07 -24.58 -0.15 -2.66 16 18 C 0.15 3.45 5.87 -2.53 -0.01 3.44 16 19 N -0.60 -15.19 3.39 -170.08 -0.58 -15.77 16 20 C -0.22 -6.08 10.27 -15.06 -0.15 -6.24 16 21 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 22 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 23 N -0.93 -26.22 10.09 55.49 0.56 -25.66 16 24 Si 0.91 21.97 29.55 -169.99 -5.02 16.94 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 C 0.14 2.95 6.20 -3.07 -0.02 2.94 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.95 8.12 -51.93 -0.42 0.52 16 31 H 0.08 1.26 6.03 -51.93 -0.31 0.94 16 32 H 0.40 4.79 6.51 -40.82 -0.27 4.52 16 33 H 0.15 1.63 7.64 -52.48 -0.40 1.23 16 34 H 0.15 1.39 7.72 -52.49 -0.41 0.99 16 35 H 0.20 0.49 7.16 -52.49 -0.38 0.12 16 36 H 0.19 0.75 8.06 -52.49 -0.42 0.32 16 37 H 0.14 0.65 6.82 -52.49 -0.36 0.29 16 38 H 0.14 1.02 6.39 -52.49 -0.34 0.68 16 39 H 0.08 1.33 8.05 -51.93 -0.42 0.91 16 40 H 0.06 0.88 8.07 -51.93 -0.42 0.46 16 41 H 0.11 2.80 5.87 -51.93 -0.30 2.49 16 42 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.03 0.72 6.90 -51.93 -0.36 0.36 16 45 H 0.03 0.70 7.81 -51.93 -0.41 0.29 16 LS Contribution 369.35 15.07 5.57 5.57 Total: -1.00 -34.28 369.35 -7.51 -41.79 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -5.60 Total: 3.10 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -3.39 Total: -0.71 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: 0.87 Total: -57.29 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.07 Total: -9.41 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.28 -7.51 -41.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046765310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.509 kcal (2) G-P(sol) polarization free energy of solvation -34.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds