Wall clock time and date at job start Sat Apr 11 2020 06:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 110.63762 * 2 1 4 4 C 1.34778 * 120.00121 * 56.85752 * 3 2 1 5 5 O 1.21577 * 119.99718 * 0.02562 * 4 3 2 6 6 C 1.47677 * 120.00197 * 179.97438 * 4 3 2 7 7 C 1.39699 * 120.08473 * 180.02562 * 6 4 3 8 8 C 1.37739 * 119.92326 * 180.02562 * 7 6 4 9 9 C 1.39027 * 120.07953 * 359.97438 * 8 7 6 10 10 N 1.39933 * 119.91897 * 179.97438 * 9 8 7 11 11 C 1.36315 * 126.86568 * 180.02562 * 10 9 8 12 12 C 1.34963 * 106.77603 * 179.73704 * 11 10 9 13 13 N 1.33372 * 109.01972 * 0.02562 * 12 11 10 14 14 N 1.28767 * 109.92441 * 359.97438 * 13 12 11 15 15 C 1.39027 * 120.15682 * 0.26024 * 9 8 7 16 16 C 1.37737 * 120.08357 * 359.48350 * 15 9 8 17 17 C 1.55156 * 110.72044 * 236.85988 * 2 1 3 18 18 C 1.54909 * 101.57944 * 205.95772 * 17 2 1 19 19 N 1.47425 * 104.83329 * 37.00612 * 18 17 2 20 20 C 1.36935 * 125.64570 * 155.90456 * 19 18 17 21 21 H 1.07997 * 120.00264 * 179.97438 * 20 19 18 22 22 C 1.38813 * 120.00070 * 359.97438 * 20 19 18 23 23 N 1.31614 * 120.00196 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99982 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46825 * 59.99595 * 24 22 20 26 26 H 1.48496 * 109.46959 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.46771 * 299.99679 * 24 22 20 28 28 C 1.47022 * 108.70397 * 335.87320 * 19 18 17 29 29 H 1.09000 * 109.47071 * 60.70225 * 1 2 3 30 30 H 1.08997 * 109.46957 * 180.70174 * 1 2 3 31 31 H 1.09000 * 109.47284 * 300.69696 * 1 2 3 32 32 H 0.96998 * 119.99811 * 236.85664 * 3 2 1 33 33 H 1.08004 * 120.03132 * 0.02562 * 7 6 4 34 34 H 1.07999 * 119.95980 * 179.97438 * 8 7 6 35 35 H 1.08001 * 126.60863 * 359.76874 * 11 10 9 36 36 H 1.08001 * 125.48720 * 179.97438 * 12 11 10 37 37 H 1.08000 * 119.95604 * 179.71876 * 15 9 8 38 38 H 1.08001 * 120.04352 * 180.25312 * 16 15 9 39 39 H 1.08999 * 111.00227 * 324.02738 * 17 2 1 40 40 H 1.08997 * 111.00371 * 87.88004 * 17 2 1 41 41 H 1.08997 * 110.36942 * 155.85121 * 18 17 2 42 42 H 1.09004 * 110.36336 * 278.16607 * 18 17 2 43 43 H 0.96999 * 120.00385 * 180.02562 * 23 22 20 44 44 H 1.08995 * 109.88146 * 241.64169 * 28 19 18 45 45 H 1.08999 * 109.87837 * 120.47203 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3710 0.0000 4 6 1.6867 2.2266 0.9773 5 8 0.9342 1.8604 1.8592 6 6 2.2077 3.6084 0.9776 7 6 1.8364 4.4965 1.9901 8 6 2.3239 5.7848 1.9869 9 6 3.1848 6.2015 0.9779 10 7 3.6776 7.5112 0.9776 11 6 4.5234 8.0666 0.0641 12 6 4.7280 9.3439 0.4488 13 7 4.0348 9.5784 1.5639 14 7 3.3953 8.5171 1.9144 15 6 3.5526 5.3219 -0.0340 16 6 3.0733 4.0306 -0.0343 17 6 2.0790 -0.7934 -1.2151 18 6 3.4652 -1.2446 -0.6913 19 7 3.2494 -1.5469 0.7354 20 6 4.0125 -2.3917 1.4964 21 1 3.7714 -2.5468 2.5377 22 6 5.0958 -3.0490 0.9295 23 7 5.3893 -2.8605 -0.3395 24 14 6.1371 -4.2009 1.9679 25 1 5.2864 -5.2987 2.4936 26 1 7.2238 -4.7736 1.1334 27 1 6.7286 -3.4466 3.1020 28 6 2.0798 -0.7905 1.2059 29 1 -0.3633 0.5029 -0.8962 30 1 -0.3633 -1.0276 0.0126 31 1 -0.3634 0.5246 0.8837 32 1 2.6471 1.6630 -0.7034 33 1 1.1680 4.1733 2.7744 34 1 2.0369 6.4720 2.7690 35 1 4.9475 7.5786 -0.8010 36 1 5.3530 10.0605 -0.0633 37 1 4.2180 5.6504 -0.8187 38 1 3.3626 3.3467 -0.8185 39 1 1.4470 -1.6529 -1.4383 40 1 2.1820 -0.1489 -2.0882 41 1 3.7994 -2.1363 -1.2217 42 1 4.1930 -0.4408 -0.8030 43 1 6.1461 -3.3200 -0.7358 44 1 2.3775 -0.1015 1.9963 45 1 1.3190 -1.4773 1.5770 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046765310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:44 Heat of formation + Delta-G solvation = 109.708595 kcal Electronic energy + Delta-G solvation = -28836.096476 eV Core-core repulsion = 24856.234205 eV Total energy + Delta-G solvation = -3979.862272 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.24882 -41.61108 -40.13150 -38.71895 -35.78166 -35.58296 -33.80191 -32.56684 -31.84746 -31.64617 -30.64168 -30.18990 -27.54545 -26.17699 -25.33578 -24.51343 -23.42484 -22.25537 -22.24235 -21.74526 -20.46711 -19.72635 -19.15659 -18.57997 -17.25675 -16.93710 -16.74868 -16.42382 -16.25117 -16.07283 -15.89868 -15.57368 -15.37835 -14.98691 -14.79355 -14.61586 -14.40168 -14.08133 -14.03099 -13.79810 -13.55182 -13.30583 -13.11681 -12.97288 -12.83267 -12.76114 -12.31331 -12.20772 -12.14508 -12.09054 -12.03136 -11.96719 -11.68401 -11.56106 -10.76395 -10.72924 -10.47231 -10.27089 -10.09748 -9.59424 -8.87857 -7.78542 -5.21501 -0.83895 0.13701 0.51672 1.04710 1.45657 1.47706 1.52940 1.54260 1.79616 2.10067 2.48481 2.69222 3.26811 3.30569 3.48713 3.55883 3.67218 3.71966 3.74451 3.85479 4.02785 4.03790 4.12740 4.18429 4.22844 4.36956 4.47161 4.64658 4.68890 4.78417 4.80462 4.86241 4.89829 4.92292 5.02304 5.05318 5.09406 5.14031 5.24346 5.36487 5.37273 5.43383 5.61556 5.67922 5.77579 5.82067 6.32557 6.57416 7.03594 7.11984 7.22004 7.77906 8.40870 9.22357 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014209 B = 0.002465 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.127065 B =11357.352033 C =12293.744773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.171 3.829 3 N -0.694 5.694 4 C 0.555 3.445 5 O -0.568 6.568 6 C -0.140 4.140 7 C -0.046 4.046 8 C -0.123 4.123 9 C 0.151 3.849 10 N -0.326 5.326 11 C 0.041 3.959 12 C -0.079 4.079 13 N -0.263 5.263 14 N -0.112 5.112 15 C -0.117 4.117 16 C -0.053 4.053 17 C -0.127 4.127 18 C 0.154 3.846 19 N -0.623 5.623 20 C -0.243 4.243 21 H 0.068 0.932 22 C -0.058 4.058 23 N -0.941 5.941 24 Si 0.975 3.025 25 H -0.280 1.280 26 H -0.287 1.287 27 H -0.284 1.284 28 C 0.135 3.865 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.411 0.589 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.247 0.753 36 H 0.225 0.775 37 H 0.183 0.817 38 H 0.166 0.834 39 H 0.083 0.917 40 H 0.105 0.895 41 H 0.076 0.924 42 H -0.002 1.002 43 H 0.249 0.751 44 H 0.006 0.994 45 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.547 20.380 -8.479 22.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.085 3.915 3 N -0.346 5.346 4 C 0.343 3.657 5 O -0.448 6.448 6 C -0.144 4.144 7 C -0.065 4.065 8 C -0.144 4.144 9 C 0.058 3.942 10 N -0.108 5.108 11 C -0.109 4.109 12 C -0.235 4.235 13 N -0.132 5.132 14 N -0.088 5.088 15 C -0.137 4.137 16 C -0.072 4.072 17 C -0.166 4.166 18 C 0.029 3.971 19 N -0.349 5.349 20 C -0.372 4.372 21 H 0.086 0.914 22 C -0.251 4.251 23 N -0.591 5.591 24 Si 0.803 3.197 25 H -0.206 1.206 26 H -0.213 1.213 27 H -0.210 1.210 28 C 0.009 3.991 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.249 0.751 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.263 0.737 36 H 0.242 0.758 37 H 0.200 0.800 38 H 0.184 0.816 39 H 0.101 0.899 40 H 0.124 0.876 41 H 0.094 0.906 42 H 0.016 0.984 43 H 0.059 0.941 44 H 0.024 0.976 45 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -4.656 20.395 -6.579 21.930 hybrid contribution 1.412 -0.960 0.004 1.707 sum -3.245 19.435 -6.575 20.772 Atomic orbital electron populations 1.21997 0.92128 1.02856 1.03245 1.21166 0.94349 0.80544 0.95476 1.45794 1.49434 1.11098 1.28291 1.18484 0.80407 0.85546 0.81261 1.90731 1.37741 1.78744 1.37588 1.20100 1.02058 0.93367 0.98861 1.21148 0.96965 0.91413 0.97009 1.20881 0.97971 0.96518 0.98987 1.17969 0.97549 0.80743 0.97897 1.48167 1.32847 1.09747 1.19996 1.24530 0.93920 0.95181 0.97254 1.24015 1.05925 0.97545 0.95987 1.74333 1.06871 1.18559 1.13416 1.82156 1.22625 0.91174 1.12887 1.21155 1.02045 0.92133 0.98369 1.21471 0.93050 0.95816 0.96908 1.23227 0.97480 0.99770 0.96121 1.21789 0.92359 0.98902 0.84025 1.44763 1.31126 1.50482 1.08525 1.19307 1.06982 1.17742 0.93218 0.91447 1.25492 0.99786 1.02136 0.97689 1.69978 1.30268 1.47048 1.11792 0.85209 0.78146 0.78770 0.77527 1.20565 1.21296 1.21022 1.21687 0.89123 0.92775 0.95518 0.90248 0.91379 0.92016 0.75124 0.84260 0.84041 0.73667 0.75814 0.79984 0.81633 0.89883 0.87621 0.90594 0.98427 0.94107 0.97623 0.96089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.08 8.38 71.98 0.60 -3.48 16 2 C 0.17 5.58 0.81 4.79 0.00 5.58 16 3 N -0.69 -19.14 5.09 -420.53 -2.14 -21.28 16 4 C 0.55 16.43 6.98 86.74 0.61 17.03 16 5 O -0.57 -20.98 13.33 -3.96 -0.05 -21.04 16 6 C -0.14 -3.18 5.88 -20.08 -0.12 -3.29 16 7 C -0.05 -1.04 9.58 22.50 0.22 -0.82 16 8 C -0.12 -2.52 9.66 22.34 0.22 -2.30 16 9 C 0.15 2.61 6.70 38.23 0.26 2.86 16 10 N -0.33 -5.77 3.85 -187.13 -0.72 -6.49 16 11 C 0.04 0.40 10.92 83.24 0.91 1.30 16 12 C -0.08 -0.99 11.86 83.71 0.99 0.00 16 13 N -0.26 -5.85 12.33 -58.72 -0.72 -6.57 16 14 N -0.11 -2.70 13.15 37.02 0.49 -2.22 16 15 C -0.12 -1.36 9.46 22.34 0.21 -1.15 16 16 C -0.05 -0.80 9.53 22.50 0.21 -0.59 16 17 C -0.13 -4.06 6.07 31.99 0.19 -3.86 16 18 C 0.15 6.94 5.87 86.85 0.51 7.45 16 19 N -0.62 -31.97 3.39 -692.01 -2.35 -34.32 16 20 C -0.24 -13.88 10.27 84.03 0.86 -13.01 16 21 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 22 C -0.06 -3.25 5.49 84.86 0.47 -2.78 16 23 N -0.94 -53.86 10.09 21.65 0.22 -53.64 16 24 Si 0.98 45.52 29.55 68.60 2.03 47.54 16 25 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 26 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 27 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 28 C 0.14 5.98 6.20 86.73 0.54 6.51 16 29 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.07 1.88 8.12 -2.39 -0.02 1.86 16 31 H 0.06 1.98 6.03 -2.39 -0.01 1.97 16 32 H 0.41 8.72 6.51 -92.71 -0.60 8.12 16 33 H 0.14 3.33 7.64 -2.91 -0.02 3.31 16 34 H 0.14 2.91 7.72 -2.91 -0.02 2.89 16 35 H 0.25 -0.40 7.16 -2.91 -0.02 -0.42 16 36 H 0.23 0.91 8.06 -2.91 -0.02 0.89 16 37 H 0.18 0.50 6.82 -2.91 -0.02 0.48 16 38 H 0.17 1.65 6.39 -2.91 -0.02 1.63 16 39 H 0.08 2.61 8.05 -2.39 -0.02 2.59 16 40 H 0.11 2.50 8.07 -2.39 -0.02 2.48 16 41 H 0.08 3.96 5.87 -2.39 -0.01 3.94 16 42 H 0.00 -0.10 8.14 -2.38 -0.02 -0.12 16 43 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 44 H 0.01 0.28 6.90 -2.39 -0.02 0.26 16 45 H 0.02 0.96 7.81 -2.39 -0.02 0.94 16 Total: -1.00 -79.80 369.35 3.86 -75.94 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 0.44 Total: 12.61 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: 6.68 Total: 9.46 kcal Atomic # 7 Polarization: -119.28 SS G_CDS: -5.23 Total: -124.51 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.05 Total: -21.04 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Total: -79.80 3.86 -75.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046765310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.647 kcal (2) G-P(sol) polarization free energy of solvation -79.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds