Wall clock time and date at job start Sat Apr 11 2020 06:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39962 * 120.32350 * 2 1 4 4 N 1.31506 * 120.11005 * 180.02562 * 3 2 1 5 5 C 1.33381 * 120.84819 * 359.64187 * 4 3 2 6 6 C 1.40809 * 132.47601 * 179.61235 * 5 4 3 7 7 C 1.46587 * 126.53738 * 0.78623 * 6 5 4 8 8 O 1.21719 * 119.99892 * 335.31408 * 7 6 5 9 9 N 1.34778 * 120.00029 * 155.31207 * 7 6 5 10 10 C 1.46652 * 125.33293 * 174.51882 * 9 7 6 11 11 C 1.53681 * 107.96980 * 179.29693 * 10 9 7 12 12 H 1.08994 * 113.31559 * 106.33264 * 11 10 9 13 13 C 1.53986 * 109.29376 * 233.06172 * 11 10 9 14 14 N 1.46755 * 106.67422 * 82.34142 * 13 11 10 15 15 C 1.36943 * 125.33502 * 198.42124 * 14 13 11 16 16 H 1.07999 * 120.00036 * 180.02562 * 15 14 13 17 17 C 1.38817 * 119.99432 * 0.03348 * 15 14 13 18 18 N 1.31616 * 120.00365 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99470 * 179.97438 * 17 15 14 20 20 H 1.48492 * 109.47348 * 89.99734 * 19 17 15 21 21 H 1.48500 * 109.46887 * 209.99571 * 19 17 15 22 22 H 1.48502 * 109.46998 * 329.99318 * 19 17 15 23 23 C 1.46659 * 109.33403 * 18.45227 * 14 13 11 24 24 C 1.53669 * 107.96940 * 359.28624 * 23 14 13 25 25 H 1.08996 * 112.77617 * 106.02277 * 24 23 14 26 26 C 1.46753 * 125.33372 * 354.52679 * 9 7 6 27 27 C 1.40640 * 106.92350 * 180.51994 * 6 5 4 28 28 N 1.30700 * 108.72351 * 0.26530 * 27 6 5 29 29 N 1.36591 * 120.79859 * 0.67052 * 5 4 3 30 30 C 1.35754 * 120.32352 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.47389 * 270.02389 * 1 2 3 32 32 H 1.09001 * 109.47394 * 30.01865 * 1 2 3 33 33 H 1.09005 * 109.47290 * 150.02142 * 1 2 3 34 34 H 1.08005 * 119.95043 * 359.97438 * 3 2 1 35 35 H 1.08999 * 109.76769 * 59.67091 * 10 9 7 36 36 H 1.08997 * 109.77354 * 298.92386 * 10 9 7 37 37 H 1.08995 * 110.02058 * 323.03939 * 13 11 10 38 38 H 1.09003 * 110.01523 * 201.64310 * 13 11 10 39 39 H 0.97001 * 119.99880 * 180.02562 * 18 17 15 40 40 H 1.09007 * 109.76432 * 239.65949 * 23 14 13 41 41 H 1.08993 * 109.77359 * 118.92051 * 23 14 13 42 42 H 1.08998 * 110.02016 * 79.13713 * 26 9 7 43 43 H 1.09000 * 110.01648 * 317.74829 * 26 9 7 44 44 H 1.07997 * 125.64025 * 180.29240 * 27 6 5 45 45 H 1.08005 * 120.42025 * 0.04654 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2136 1.2081 0.0000 4 7 3.5286 1.2032 -0.0005 5 6 4.2083 0.0556 0.0061 6 6 5.5864 -0.2334 0.0003 7 6 6.6823 0.7402 0.0004 8 8 6.4996 1.8622 -0.4348 9 7 7.8921 0.3930 0.4824 10 6 9.0956 1.2298 0.4358 11 6 10.2383 0.4546 1.1104 12 1 10.9708 0.0643 0.4039 13 6 10.8733 1.3335 2.2038 14 7 10.0278 1.1991 3.3958 15 6 10.0158 2.0613 4.4597 16 1 9.3567 1.8786 5.2954 17 6 10.8508 3.1702 4.4636 18 7 11.6543 3.3927 3.4452 19 14 10.8340 4.3467 5.9145 20 1 11.8295 3.9032 6.9230 21 1 11.1780 5.7137 5.4472 22 1 9.4809 4.3587 6.5264 23 6 9.1982 -0.0037 3.2696 24 6 9.5193 -0.6614 1.9184 25 1 10.1186 -1.5660 2.0212 26 6 8.2115 -0.8815 1.1359 27 6 5.7109 -1.6343 0.0006 28 7 4.5151 -2.1618 0.0004 29 7 3.5552 -1.1440 -0.0001 30 6 2.1924 -1.1718 0.0005 31 1 -0.3634 0.0004 1.0276 32 1 -0.3634 0.8898 -0.5141 33 1 -0.3634 -0.8902 -0.5135 34 1 1.6780 2.1461 -0.0004 35 1 8.9169 2.1626 0.9706 36 1 9.3565 1.4431 -0.6007 37 1 10.8976 2.3737 1.8791 38 1 11.8833 0.9864 2.4217 39 1 12.2381 4.1674 3.4482 40 1 8.1437 0.2704 3.3048 41 1 9.4265 -0.6958 4.0800 42 1 8.3516 -1.6604 0.3864 43 1 7.4101 -1.1613 1.8198 44 1 6.6409 -2.1834 0.0013 45 1 1.6645 -2.1141 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049088158.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:06 Heat of formation + Delta-G solvation = 127.442843 kcal Electronic energy + Delta-G solvation = -29653.419813 eV Core-core repulsion = 25674.326556 eV Total energy + Delta-G solvation = -3979.093257 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.71218 -40.01118 -38.62959 -37.70203 -34.84116 -34.61961 -33.02602 -32.09962 -30.45657 -29.74311 -29.45228 -27.45711 -25.64471 -25.38274 -25.08445 -23.63370 -22.63618 -21.83943 -19.98912 -19.70798 -19.27987 -18.45410 -17.38886 -17.15283 -16.59639 -16.50891 -15.73436 -15.52357 -15.00540 -14.66638 -14.43030 -14.24467 -14.00636 -13.82000 -13.53860 -13.25824 -12.95294 -12.90065 -12.83071 -12.66242 -12.51744 -12.06937 -11.84135 -11.65771 -11.55025 -11.35639 -11.19602 -10.89512 -10.77553 -10.33330 -10.08021 -10.06763 -9.90859 -9.80294 -9.73519 -9.56807 -9.49684 -8.58349 -8.28547 -8.03304 -6.78044 -5.63827 -3.01845 0.11748 0.45976 1.64714 2.01281 2.90874 3.24970 3.43889 3.49018 3.51190 3.54267 3.66558 3.82222 3.95883 4.25084 4.42285 4.52751 4.79305 4.82508 4.86024 4.96718 5.01400 5.04751 5.23381 5.26975 5.36825 5.40337 5.52235 5.59150 5.64385 5.73653 5.80804 5.87396 5.92123 6.01534 6.11477 6.23018 6.40154 6.50715 6.70268 6.79359 6.83954 6.90423 7.04208 7.34700 7.50629 7.67323 7.87648 7.94583 8.37638 8.63143 9.27342 9.87866 10.50956 11.42913 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015319 B = 0.002913 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.308593 B = 9609.084096 C =10471.392554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.189 4.189 3 C 0.186 3.814 4 N -0.437 5.437 5 C 0.310 3.690 6 C -0.272 4.272 7 C 0.608 3.392 8 O -0.531 6.531 9 N -0.605 5.605 10 C 0.126 3.874 11 C -0.123 4.123 12 H 0.088 0.912 13 C 0.170 3.830 14 N -0.600 5.600 15 C -0.223 4.223 16 H 0.076 0.924 17 C -0.009 4.009 18 N -0.922 5.922 19 Si 0.913 3.087 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.282 1.282 23 C 0.144 3.856 24 C -0.109 4.109 25 H 0.098 0.902 26 C 0.109 3.891 27 C 0.123 3.877 28 N -0.313 5.313 29 N -0.305 5.305 30 C 0.158 3.842 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.183 0.817 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.097 0.903 38 H 0.019 0.981 39 H 0.252 0.748 40 H 0.022 0.978 41 H 0.021 0.979 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.208 0.792 45 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.029 -12.948 -9.576 25.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.195 4.195 3 C 0.002 3.998 4 N -0.146 5.146 5 C 0.078 3.922 6 C -0.288 4.288 7 C 0.397 3.603 8 O -0.408 6.408 9 N -0.339 5.339 10 C 0.004 3.996 11 C -0.143 4.143 12 H 0.107 0.893 13 C 0.045 3.955 14 N -0.326 5.326 15 C -0.352 4.352 16 H 0.094 0.906 17 C -0.205 4.205 18 N -0.570 5.570 19 Si 0.744 3.256 20 H -0.217 1.217 21 H -0.216 1.216 22 H -0.208 1.208 23 C 0.018 3.982 24 C -0.129 4.129 25 H 0.116 0.884 26 C -0.015 4.015 27 C -0.057 4.057 28 N -0.135 5.135 29 N -0.073 5.073 30 C 0.022 3.978 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.200 0.800 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.115 0.885 38 H 0.037 0.963 39 H 0.063 0.937 40 H 0.040 0.960 41 H 0.039 0.961 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.224 0.776 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -19.967 -12.583 -9.778 25.547 hybrid contribution 0.044 0.408 0.869 0.961 sum -19.923 -12.175 -8.909 24.991 Atomic orbital electron populations 1.20615 0.87415 1.04027 1.03420 1.20605 0.99168 0.92350 1.07426 1.23608 0.88941 0.98612 0.88625 1.68332 1.08550 1.24044 1.13673 1.20345 0.93088 0.81194 0.97548 1.19431 0.90131 0.93690 1.25543 1.16324 0.80038 0.85937 0.78035 1.90829 1.81639 1.20689 1.47595 1.47952 1.09282 1.18131 1.58538 1.21828 0.82712 0.95115 0.99941 1.23208 0.96400 0.96340 0.98380 0.89345 1.21470 0.91316 0.99372 0.83369 1.44195 1.44603 1.24501 1.19275 1.19038 1.18555 1.01841 0.95722 0.90588 1.24773 0.98751 0.98696 0.98271 1.69854 1.27591 1.29615 1.29981 0.86088 0.77541 0.80456 0.81518 1.21679 1.21623 1.20754 1.21131 0.94790 0.89271 0.92985 1.22844 0.94738 0.98983 0.96321 0.88432 1.22120 0.97844 0.86084 0.95404 1.24422 0.96595 0.92446 0.92225 1.77582 0.96282 1.08268 1.31367 1.46996 1.06065 1.07923 1.46279 1.21930 0.79365 1.01210 0.95268 0.90201 0.90088 0.90767 0.79971 0.90151 0.92422 0.88515 0.96299 0.93710 0.95983 0.96102 0.92139 0.91065 0.77595 0.80151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.24 10.03 36.00 0.36 0.12 16 2 C -0.19 -1.24 5.86 -104.87 -0.61 -1.86 16 3 C 0.19 1.70 10.97 -17.05 -0.19 1.52 16 4 N -0.44 -6.51 10.47 -12.00 -0.13 -6.64 16 5 C 0.31 4.81 7.78 -155.84 -1.21 3.60 16 6 C -0.27 -4.43 5.82 -104.65 -0.61 -5.04 16 7 C 0.61 11.77 7.75 -12.89 -0.10 11.67 16 8 O -0.53 -12.31 17.32 5.17 0.09 -12.22 16 9 N -0.61 -10.78 3.31 -173.91 -0.58 -11.35 16 10 C 0.13 2.43 6.24 -3.61 -0.02 2.41 16 11 C -0.12 -2.25 4.09 -88.47 -0.36 -2.61 16 12 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 13 C 0.17 4.06 4.84 -3.39 -0.02 4.05 16 14 N -0.60 -15.42 3.38 -171.89 -0.58 -16.00 16 15 C -0.22 -6.34 10.25 -15.05 -0.15 -6.50 16 16 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 17 C -0.01 -0.26 5.48 -17.43 -0.10 -0.36 16 18 N -0.92 -27.16 10.16 55.49 0.56 -26.60 16 19 Si 0.91 22.64 29.55 -169.99 -5.02 17.61 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 C 0.14 3.01 6.62 -3.61 -0.02 2.99 16 24 C -0.11 -1.79 4.09 -88.48 -0.36 -2.15 16 25 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 26 C 0.11 1.55 4.40 -3.39 -0.01 1.53 16 27 C 0.12 1.58 10.23 -17.13 -0.18 1.41 16 28 N -0.31 -4.03 12.58 30.76 0.39 -3.64 16 29 N -0.30 -3.81 3.86 -11.97 -0.05 -3.86 16 30 C 0.16 1.27 10.94 -16.45 -0.18 1.09 16 31 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.08 0.12 8.10 -51.93 -0.42 -0.30 16 33 H 0.07 0.10 8.09 -51.93 -0.42 -0.32 16 34 H 0.18 0.99 8.06 -52.48 -0.42 0.57 16 35 H 0.08 1.89 7.47 -51.93 -0.39 1.50 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.10 2.63 5.83 -51.93 -0.30 2.33 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.02 0.49 7.47 -51.93 -0.39 0.10 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.65 6.84 -51.93 -0.36 0.29 16 43 H 0.07 0.98 6.89 -51.93 -0.36 0.62 16 44 H 0.21 1.96 5.70 -52.49 -0.30 1.66 16 45 H 0.18 0.79 8.06 -52.48 -0.42 0.36 16 LS Contribution 364.83 15.07 5.50 5.50 Total: -1.00 -38.21 364.83 -9.44 -47.65 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -5.86 Total: -2.32 kcal Atomic # 6 Polarization: 15.63 SS G_CDS: -3.77 Total: 11.87 kcal Atomic # 7 Polarization: -67.71 SS G_CDS: -0.38 Total: -68.09 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.09 Total: -12.22 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -38.21 -9.44 -47.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049088158.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.090 kcal (2) G-P(sol) polarization free energy of solvation -38.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds