Wall clock time and date at job start Sat Apr 11 2020 06:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38396 * 120.85668 * 2 1 4 4 C 1.38308 * 119.30310 * 179.97438 * 3 2 1 5 5 N 1.31959 * 121.08127 * 0.02562 * 4 3 2 6 6 C 1.31664 * 121.88123 * 0.02562 * 5 4 3 7 7 C 1.39558 * 120.56503 * 359.73900 * 6 5 4 8 8 C 1.47841 * 120.55990 * 180.28192 * 7 6 5 9 9 O 1.21559 * 119.99757 * 186.44126 * 8 7 6 10 10 N 1.34773 * 119.99947 * 6.44196 * 8 7 6 11 11 C 1.46504 * 119.99671 * 179.97438 * 10 8 7 12 12 C 1.50700 * 109.46702 * 180.02562 * 11 10 8 13 13 C 1.40077 * 126.11989 * 259.68689 * 12 11 10 14 14 N 1.31015 * 108.25177 * 179.97438 * 13 12 11 15 15 N 1.39747 * 108.17988 * 0.53778 * 14 13 12 16 16 C 1.34640 * 126.13176 * 79.99944 * 12 11 10 17 17 C 1.51036 * 127.90564 * 359.44840 * 16 12 11 18 18 N 1.47500 * 107.00074 * 169.56826 * 17 16 12 19 19 C 1.36935 * 121.01428 * 222.97244 * 18 17 16 20 20 H 1.08001 * 120.00113 * 152.62169 * 19 18 17 21 21 C 1.38814 * 119.99636 * 332.62862 * 19 18 17 22 22 N 1.31611 * 120.00113 * 349.39033 * 21 19 18 23 23 Si 1.86809 * 119.99557 * 169.39416 * 21 19 18 24 24 H 1.48498 * 109.47083 * 90.00032 * 23 21 19 25 25 H 1.48500 * 109.46663 * 209.99722 * 23 21 19 26 26 H 1.48496 * 109.47351 * 329.99379 * 23 21 19 27 27 C 1.47087 * 117.97304 * 42.96799 * 18 17 16 28 28 C 1.46542 * 127.32913 * 179.23803 * 15 14 13 29 29 H 1.08999 * 109.47124 * 96.33042 * 1 2 3 30 30 H 1.08997 * 109.46776 * 336.32970 * 1 2 3 31 31 H 1.09006 * 109.47228 * 216.33412 * 1 2 3 32 32 H 1.08001 * 120.34525 * 359.96022 * 3 2 1 33 33 H 1.08004 * 119.45643 * 179.97438 * 4 3 2 34 34 H 1.07996 * 119.71388 * 180.02562 * 6 5 4 35 35 H 0.97001 * 119.99949 * 0.02562 * 10 8 7 36 36 H 1.09005 * 109.47319 * 299.99805 * 11 10 8 37 37 H 1.08995 * 109.47124 * 60.00842 * 11 10 8 38 38 H 1.07997 * 125.87536 * 0.09382 * 13 12 11 39 39 H 1.09005 * 109.94850 * 288.93862 * 17 16 12 40 40 H 1.09000 * 109.95297 * 50.19412 * 17 16 12 41 41 H 0.97011 * 119.99877 * 179.97438 * 22 21 19 42 42 H 1.09003 * 109.50704 * 176.52122 * 27 18 17 43 43 H 1.09000 * 109.51049 * 56.37920 * 27 18 17 44 44 H 1.09001 * 109.50542 * 281.39245 * 28 15 14 45 45 H 1.08999 * 109.51398 * 41.52098 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1881 0.0000 4 6 3.5994 1.1506 0.0005 5 7 4.2498 0.0024 0.0005 6 6 3.6197 -1.1537 -0.0005 7 6 2.2249 -1.2018 0.0039 8 6 1.5176 -2.5000 0.0090 9 8 0.3078 -2.5334 -0.1053 10 7 2.2140 -3.6463 0.1405 11 6 1.5129 -4.9327 0.1462 12 6 2.5128 -6.0489 0.3056 13 6 3.0166 -6.8589 -0.7201 14 7 3.8600 -7.7117 -0.1928 15 7 3.9104 -7.4801 1.1844 16 6 3.0774 -6.4501 1.4602 17 6 2.8609 -5.8855 2.8443 18 7 3.4990 -6.8161 3.7942 19 6 2.8770 -7.1688 4.9621 20 1 3.0910 -8.1227 5.4212 21 6 1.9713 -6.3003 5.5557 22 7 1.8636 -5.0631 5.1201 23 14 0.9055 -6.8878 6.9729 24 1 1.6078 -6.6377 8.2572 25 1 -0.3834 -6.1503 6.9618 26 1 0.6447 -8.3423 6.8264 27 6 4.8238 -7.3538 3.4489 28 6 4.7065 -8.2046 2.1788 29 1 -0.3633 -0.1133 -1.0214 30 1 -0.3633 0.9412 0.4126 31 1 -0.3634 -0.8279 0.6089 32 1 1.6966 2.1345 -0.0006 33 1 4.1558 2.0762 0.0001 34 1 4.1871 -2.0726 0.0000 35 1 3.1793 -3.6196 0.2321 36 1 0.8058 -4.9576 0.9754 37 1 0.9753 -5.0576 -0.7937 38 1 2.7563 -6.7909 -1.7660 39 1 3.3229 -4.9012 2.9208 40 1 1.7937 -5.8138 3.0540 41 1 1.2303 -4.4563 5.5347 42 1 5.1905 -7.9722 4.2682 43 1 5.5168 -6.5306 3.2749 44 1 4.2195 -9.1505 2.4158 45 1 5.7017 -8.3973 1.7781 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069856049.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:35 Heat of formation + Delta-G solvation = 106.199936 kcal Electronic energy + Delta-G solvation = -29494.381006 eV Core-core repulsion = 25514.366588 eV Total energy + Delta-G solvation = -3980.014419 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.05660 -40.66539 -38.79132 -36.32586 -35.09355 -33.73945 -33.05729 -31.95267 -31.01910 -30.22944 -28.92016 -27.85054 -26.11696 -25.13434 -24.10721 -23.47160 -22.22305 -21.77143 -20.61808 -20.15249 -18.51304 -17.73714 -16.78918 -16.73335 -16.40860 -15.95780 -15.53523 -15.31025 -15.02923 -14.84957 -14.59550 -14.05084 -13.90888 -13.70735 -13.52450 -13.32834 -13.19572 -12.89779 -12.77370 -12.67761 -12.54763 -12.38198 -12.01801 -11.71164 -11.62745 -11.31093 -11.00967 -10.91022 -10.74319 -10.23184 -10.22528 -10.13035 -10.03652 -9.64401 -9.38217 -9.34610 -8.93467 -8.78443 -8.57725 -7.96714 -7.05801 -6.03451 -3.50281 0.58384 1.07523 2.39314 2.86659 2.95130 2.99086 3.26932 3.34749 3.35922 3.63382 3.78292 4.19287 4.29273 4.55528 4.58815 4.76733 4.91889 4.95384 5.06231 5.18310 5.25550 5.35598 5.39804 5.44224 5.53119 5.55562 5.60097 5.68522 5.70036 5.73483 5.83343 6.03171 6.07901 6.21257 6.29691 6.34818 6.41044 6.48350 6.51486 6.64695 6.89494 7.05711 7.13572 7.55160 7.58383 7.67160 7.74191 8.09300 8.21118 8.33314 8.90538 9.51682 10.05725 11.07355 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009669 B = 0.003625 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2895.129192 B = 7722.440523 C = 9135.681536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.018 3.982 3 C -0.187 4.187 4 C 0.119 3.881 5 N -0.494 5.494 6 C 0.141 3.859 7 C -0.187 4.187 8 C 0.561 3.439 9 O -0.535 6.535 10 N -0.711 5.711 11 C 0.211 3.789 12 C -0.291 4.291 13 C 0.057 3.943 14 N -0.318 5.318 15 N -0.357 5.357 16 C 0.121 3.879 17 C 0.231 3.769 18 N -0.596 5.596 19 C -0.265 4.265 20 H 0.072 0.928 21 C 0.011 3.989 22 N -0.904 5.904 23 Si 0.910 3.090 24 H -0.284 1.284 25 H -0.287 1.287 26 H -0.278 1.278 27 C 0.129 3.871 28 C 0.113 3.887 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.102 0.898 32 H 0.140 0.860 33 H 0.159 0.841 34 H 0.158 0.842 35 H 0.398 0.602 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.176 0.824 39 H 0.057 0.943 40 H 0.109 0.891 41 H 0.260 0.740 42 H 0.084 0.916 43 H 0.036 0.964 44 H 0.076 0.924 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.240 8.188 -10.806 13.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.010 3.990 3 C -0.207 4.207 4 C -0.037 4.037 5 N -0.203 5.203 6 C -0.018 4.018 7 C -0.192 4.192 8 C 0.348 3.652 9 O -0.414 6.414 10 N -0.362 5.362 11 C 0.088 3.912 12 C -0.304 4.304 13 C -0.130 4.130 14 N -0.138 5.138 15 N -0.138 5.138 16 C -0.011 4.011 17 C 0.104 3.896 18 N -0.319 5.319 19 C -0.394 4.394 20 H 0.090 0.910 21 C -0.189 4.189 22 N -0.547 5.547 23 Si 0.739 3.261 24 H -0.211 1.211 25 H -0.213 1.213 26 H -0.203 1.203 27 C 0.000 4.000 28 C -0.010 4.010 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.120 0.880 32 H 0.157 0.843 33 H 0.176 0.824 34 H 0.175 0.825 35 H 0.233 0.767 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.193 0.807 39 H 0.074 0.926 40 H 0.127 0.873 41 H 0.070 0.930 42 H 0.103 0.897 43 H 0.054 0.946 44 H 0.094 0.906 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.067 7.183 -10.909 13.417 hybrid contribution -1.367 0.348 0.884 1.665 sum 1.700 7.532 -10.026 12.654 Atomic orbital electron populations 1.21101 0.89091 1.03699 1.04027 1.20508 0.97600 0.91327 0.89584 1.22061 0.95563 0.98654 1.04380 1.22940 0.91778 0.96407 0.92526 1.67693 1.40876 0.98305 1.13376 1.22994 0.90538 0.96570 0.91716 1.20941 0.95178 0.94612 1.08460 1.17955 0.86924 0.83392 0.76946 1.90718 1.13444 1.87070 1.50161 1.46154 1.10988 1.05868 1.73180 1.19344 0.91812 0.77979 1.02074 1.19413 1.11476 1.07043 0.92426 1.23681 0.95658 0.94226 0.99426 1.77178 1.23266 1.24559 0.88749 1.48505 1.34238 1.26207 1.04888 1.22631 0.90368 0.88835 0.99282 1.19933 1.00923 0.91120 0.77574 1.44161 1.14256 1.53260 1.20189 1.19143 1.21501 0.99567 0.99182 0.91023 1.25124 1.00801 0.94726 0.98207 1.69896 1.37633 1.03924 1.43288 0.86187 0.79835 0.78225 0.81871 1.21098 1.21278 1.20321 1.21304 0.89242 0.96175 0.93260 1.22568 0.94137 0.96347 0.87971 0.90107 0.91963 0.87966 0.84258 0.82418 0.82465 0.76658 0.90579 0.91064 0.80730 0.92556 0.87346 0.93025 0.89719 0.94557 0.90582 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 8.85 36.01 0.32 -1.08 16 2 C 0.02 0.22 5.95 -103.91 -0.62 -0.40 16 3 C -0.19 -1.84 9.78 -39.50 -0.39 -2.22 16 4 C 0.12 1.22 11.17 -17.47 -0.20 1.02 16 5 N -0.49 -6.22 10.35 -12.91 -0.13 -6.35 16 6 C 0.14 1.76 10.70 -17.13 -0.18 1.57 16 7 C -0.19 -2.50 5.89 -104.82 -0.62 -3.11 16 8 C 0.56 8.45 7.72 -12.33 -0.10 8.36 16 9 O -0.54 -9.23 13.51 5.31 0.07 -9.16 16 10 N -0.71 -10.12 5.50 -62.43 -0.34 -10.46 16 11 C 0.21 3.25 5.95 -5.19 -0.03 3.22 16 12 C -0.29 -4.88 5.46 -105.21 -0.57 -5.46 16 13 C 0.06 0.90 11.97 -17.21 -0.21 0.70 16 14 N -0.32 -5.75 12.61 30.70 0.39 -5.37 16 15 N -0.36 -6.73 4.03 -56.90 -0.23 -6.95 16 16 C 0.12 2.33 6.71 -82.17 -0.55 1.78 16 17 C 0.23 5.12 5.06 -4.48 -0.02 5.09 16 18 N -0.60 -13.71 3.00 -172.92 -0.52 -14.23 16 19 C -0.27 -6.71 9.66 -15.06 -0.15 -6.86 16 20 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 21 C 0.01 0.28 5.10 -17.43 -0.09 0.20 16 22 N -0.90 -24.36 11.02 55.49 0.61 -23.74 16 23 Si 0.91 20.61 29.57 -169.99 -5.03 15.59 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 25 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 C 0.13 2.37 6.50 -3.55 -0.02 2.35 16 28 C 0.11 1.90 7.45 -3.85 -0.03 1.87 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.56 8.06 -51.93 -0.42 0.14 16 31 H 0.10 1.42 5.95 -51.93 -0.31 1.11 16 32 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 33 H 0.16 1.09 8.06 -52.48 -0.42 0.67 16 34 H 0.16 1.69 6.48 -52.49 -0.34 1.35 16 35 H 0.40 5.16 6.57 -40.82 -0.27 4.89 16 36 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.18 2.14 8.06 -52.49 -0.42 1.72 16 39 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.11 2.71 6.55 -51.93 -0.34 2.37 16 41 H 0.26 6.86 8.31 -40.82 -0.34 6.53 16 42 H 0.08 1.44 7.94 -51.93 -0.41 1.03 16 43 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 373.70 15.07 5.63 5.63 Total: -1.00 -30.86 373.70 -8.86 -39.73 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -5.86 Total: 8.28 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: -3.45 Total: 7.04 kcal Atomic # 7 Polarization: -66.88 SS G_CDS: -0.23 Total: -67.10 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.07 Total: -9.16 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.86 -8.86 -39.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069856049.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.926 kcal (2) G-P(sol) polarization free energy of solvation -30.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds