Wall clock time and date at job start Sat Apr 11 2020 06:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38353 * 120.35093 * 2 1 4 4 N 1.31930 * 121.07858 * 180.02562 * 3 2 1 5 5 C 1.31691 * 121.88365 * 359.97438 * 4 3 2 6 6 C 1.39522 * 120.56454 * 359.97438 * 5 4 3 7 7 C 1.47840 * 120.56032 * 180.02562 * 6 5 4 8 8 O 1.21552 * 120.00317 * 180.02562 * 7 6 5 9 9 N 1.34776 * 119.99859 * 0.02562 * 7 6 5 10 10 C 1.46503 * 119.99957 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.47024 * 180.02562 * 10 9 7 12 12 C 1.40068 * 126.13010 * 259.69191 * 11 10 9 13 13 N 1.31011 * 108.26296 * 179.85396 * 12 11 10 14 14 N 1.39753 * 108.16968 * 0.60280 * 13 12 11 15 15 C 1.34647 * 126.12564 * 80.00248 * 11 10 9 16 16 C 1.51044 * 127.91039 * 359.65160 * 15 11 10 17 17 N 1.47497 * 107.00192 * 169.52915 * 16 15 11 18 18 C 1.36942 * 121.01093 * 222.90156 * 17 16 15 19 19 H 1.07995 * 120.00126 * 155.90527 * 18 17 16 20 20 C 1.38815 * 119.99971 * 335.91320 * 18 17 16 21 21 N 1.31622 * 119.99818 * 344.46573 * 20 18 17 22 22 Si 1.86801 * 120.00076 * 164.46294 * 20 18 17 23 23 H 1.48490 * 109.47049 * 59.99881 * 22 20 18 24 24 H 1.48496 * 109.47092 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.46907 * 299.99853 * 22 20 18 26 26 C 1.47078 * 117.97730 * 42.92274 * 17 16 15 27 27 C 1.46554 * 127.32078 * 179.18152 * 14 13 12 28 28 C 1.38360 * 120.34745 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.47019 * 89.99767 * 1 2 3 30 30 H 1.08992 * 109.47211 * 210.00337 * 1 2 3 31 31 H 1.09004 * 109.46862 * 330.00392 * 1 2 3 32 32 H 1.07997 * 119.45908 * 359.97438 * 3 2 1 33 33 H 1.07993 * 119.71772 * 180.02562 * 5 4 3 34 34 H 0.97005 * 120.00137 * 0.02562 * 9 7 6 35 35 H 1.08996 * 109.47254 * 300.00461 * 10 9 7 36 36 H 1.08998 * 109.46932 * 60.00353 * 10 9 7 37 37 H 1.08008 * 125.87015 * 0.03837 * 12 11 10 38 38 H 1.09004 * 109.94814 * 288.90458 * 16 15 11 39 39 H 1.08999 * 109.94570 * 50.15034 * 16 15 11 40 40 H 0.97006 * 119.99854 * 180.02562 * 21 20 18 41 41 H 1.09001 * 109.51850 * 56.34639 * 26 17 16 42 42 H 1.09002 * 109.51411 * 176.49836 * 26 17 16 43 43 H 1.09006 * 109.50489 * 41.59870 * 27 14 13 44 44 H 1.08998 * 109.50962 * 281.46216 * 27 14 13 45 45 H 1.08003 * 120.85316 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2061 1.1939 0.0000 4 7 3.5253 1.2107 -0.0005 5 6 4.2350 0.1014 -0.0005 6 6 3.6054 -1.1437 0.0005 7 6 4.4023 -2.3890 0.0011 8 8 3.8432 -3.4683 0.0015 9 7 5.7486 -2.3274 0.0011 10 6 6.5383 -3.5614 0.0022 11 6 8.0058 -3.2187 0.0026 12 6 8.8565 -3.2287 -1.1101 13 7 10.0535 -2.8718 -0.7149 14 7 10.0059 -2.6371 0.6619 15 6 8.7354 -2.8536 1.0737 16 6 8.2713 -2.6947 2.5023 17 7 9.4794 -2.5323 3.3327 18 6 9.6034 -3.1807 4.5325 19 1 10.5835 -3.3806 4.9395 20 6 8.4691 -3.5812 5.2254 21 7 7.2928 -3.0852 4.9049 22 14 8.6123 -4.8240 6.6125 23 1 9.5066 -4.2860 7.6688 24 1 7.2673 -5.0824 7.1864 25 1 9.1766 -6.0921 6.0847 26 6 10.5468 -1.6522 2.8331 27 6 11.1132 -2.2339 1.5333 28 6 2.2060 -1.1940 0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5138 32 1 1.6630 2.1274 -0.0004 33 1 5.3136 0.1559 -0.0005 34 1 6.1948 -1.4661 0.0011 35 1 6.3013 -4.1437 0.8926 36 1 6.3014 -4.1451 -0.8873 37 1 8.5736 -3.4837 -2.1208 38 1 7.6373 -1.8125 2.5914 39 1 7.7213 -3.5822 2.8154 40 1 6.5003 -3.3648 5.3893 41 1 10.1401 -0.6594 2.6410 42 1 11.3402 -1.5836 3.5774 43 1 11.7167 -1.4790 1.0292 44 1 11.7313 -3.1021 1.7619 45 1 1.6858 -2.1405 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069856112.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:38 Heat of formation + Delta-G solvation = 102.517773 kcal Electronic energy + Delta-G solvation = -29185.934899 eV Core-core repulsion = 25205.760810 eV Total energy + Delta-G solvation = -3980.174089 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.05481 -40.62677 -38.87256 -36.33562 -34.94592 -33.84208 -33.04585 -32.33114 -31.18121 -30.24318 -28.87937 -27.50482 -26.22608 -25.30318 -23.89843 -23.35440 -22.85671 -21.78365 -20.34817 -20.13632 -18.51625 -17.77356 -16.99225 -16.74309 -16.70079 -15.92806 -15.51368 -15.20890 -15.07451 -14.67597 -14.34395 -14.24960 -13.88919 -13.67273 -13.50587 -13.32338 -13.25832 -13.13311 -12.99978 -12.82470 -12.58281 -12.50632 -12.09879 -11.72301 -11.64196 -11.33230 -11.00454 -10.88816 -10.75892 -10.30828 -10.23196 -10.15046 -10.08865 -9.91762 -9.52570 -9.17510 -8.92845 -8.81291 -8.57910 -7.97463 -7.10405 -6.02957 -3.45848 0.54365 1.03819 2.38504 2.85486 2.91795 2.98442 3.28519 3.36122 3.36189 3.60836 3.76298 4.16043 4.30255 4.50960 4.65806 4.74456 4.78183 4.92343 4.99465 5.04393 5.18626 5.27343 5.30221 5.34869 5.45904 5.49801 5.53018 5.59062 5.68042 5.70712 5.82594 5.89687 5.98286 6.09823 6.20354 6.33842 6.39931 6.40403 6.49917 6.60332 6.88228 7.05048 7.11900 7.54624 7.57923 7.64856 7.70669 8.07490 8.20436 8.30806 8.90224 9.52732 10.05137 11.07907 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009948 B = 0.003374 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2814.069939 B = 8297.828225 C = 9750.436586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.148 4.148 3 C 0.116 3.884 4 N -0.484 5.484 5 C 0.130 3.870 6 C -0.174 4.174 7 C 0.561 3.439 8 O -0.540 6.540 9 N -0.710 5.710 10 C 0.210 3.790 11 C -0.291 4.291 12 C 0.057 3.943 13 N -0.317 5.317 14 N -0.357 5.357 15 C 0.121 3.879 16 C 0.230 3.770 17 N -0.596 5.596 18 C -0.266 4.266 19 H 0.073 0.927 20 C 0.009 3.991 21 N -0.903 5.903 22 Si 0.909 3.091 23 H -0.281 1.281 24 H -0.288 1.288 25 H -0.282 1.282 26 C 0.129 3.871 27 C 0.113 3.887 28 C -0.020 4.020 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.158 0.842 33 H 0.159 0.841 34 H 0.399 0.601 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.176 0.824 38 H 0.057 0.943 39 H 0.109 0.891 40 H 0.260 0.740 41 H 0.036 0.964 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.704 6.559 -10.914 14.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.150 4.150 3 C -0.041 4.041 4 N -0.191 5.191 5 C -0.029 4.029 6 C -0.179 4.179 7 C 0.347 3.653 8 O -0.418 6.418 9 N -0.361 5.361 10 C 0.087 3.913 11 C -0.303 4.303 12 C -0.130 4.130 13 N -0.137 5.137 14 N -0.138 5.138 15 C -0.011 4.011 16 C 0.103 3.897 17 N -0.318 5.318 18 C -0.394 4.394 19 H 0.091 0.909 20 C -0.190 4.190 21 N -0.546 5.546 22 Si 0.738 3.262 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.208 1.208 26 C 0.000 4.000 27 C -0.010 4.010 28 C -0.047 4.047 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.175 0.825 33 H 0.176 0.824 34 H 0.234 0.766 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.193 0.807 38 H 0.074 0.926 39 H 0.127 0.873 40 H 0.070 0.930 41 H 0.054 0.946 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.424 6.798 -11.064 14.488 hybrid contribution -0.806 -1.173 0.922 1.696 sum -7.230 5.625 -10.142 13.666 Atomic orbital electron populations 1.20723 0.89713 1.03449 1.02728 1.20931 0.97950 0.93807 1.02318 1.22880 0.89973 0.97617 0.93617 1.67692 1.08014 1.31025 1.12376 1.22990 1.00346 0.86852 0.92667 1.21081 0.95177 0.95026 1.06660 1.17973 0.82291 0.88209 0.76835 1.90767 1.71189 1.29568 1.50266 1.46143 1.05347 1.10722 1.73900 1.19355 0.84492 0.85055 1.02387 1.19403 0.96517 1.21491 0.92910 1.23680 0.90497 0.99679 0.99112 1.77183 1.21933 1.23837 0.90744 1.48510 1.08138 1.52049 1.05119 1.22603 0.84911 0.94445 0.99147 1.19932 0.88770 1.02715 0.78234 1.44188 1.16090 1.51325 1.20246 1.19117 0.92778 1.31403 0.96111 0.90896 1.25036 0.95838 0.99978 0.98171 1.69932 0.98432 1.43192 1.43079 0.86267 0.76985 0.81411 0.81519 1.20692 1.21346 1.20810 1.21277 0.93614 0.92915 0.92164 1.22561 0.87141 1.00409 0.90913 1.21637 0.92525 0.98965 0.91530 0.90776 0.90993 0.90985 0.82456 0.82403 0.76588 0.90540 0.91019 0.80712 0.92581 0.87276 0.92983 0.94572 0.89700 0.90148 0.90565 0.83541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.03 36.01 0.36 -0.34 16 2 C -0.15 -1.45 5.89 -104.53 -0.62 -2.06 16 3 C 0.12 1.19 10.85 -17.47 -0.19 1.00 16 4 N -0.48 -6.07 10.35 -12.91 -0.13 -6.20 16 5 C 0.13 1.62 10.71 -17.13 -0.18 1.43 16 6 C -0.17 -2.32 5.89 -104.82 -0.62 -2.94 16 7 C 0.56 8.65 7.78 -12.33 -0.10 8.56 16 8 O -0.54 -9.93 16.42 5.32 0.09 -9.84 16 9 N -0.71 -10.24 5.50 -62.43 -0.34 -10.58 16 10 C 0.21 3.29 5.95 -5.19 -0.03 3.26 16 11 C -0.29 -4.90 5.46 -105.21 -0.57 -5.48 16 12 C 0.06 0.91 11.97 -17.22 -0.21 0.70 16 13 N -0.32 -5.74 12.61 30.70 0.39 -5.35 16 14 N -0.36 -6.72 4.03 -56.93 -0.23 -6.95 16 15 C 0.12 2.34 6.71 -82.16 -0.55 1.79 16 16 C 0.23 5.10 5.11 -4.48 -0.02 5.08 16 17 N -0.60 -13.71 3.01 -172.97 -0.52 -14.23 16 18 C -0.27 -6.73 9.67 -15.06 -0.15 -6.88 16 19 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 20 C 0.01 0.24 5.00 -17.43 -0.09 0.15 16 21 N -0.90 -24.45 11.07 55.49 0.61 -23.83 16 22 Si 0.91 20.73 29.58 -169.99 -5.03 15.70 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 C 0.13 2.37 6.49 -3.60 -0.02 2.35 16 27 C 0.11 1.90 7.44 -3.88 -0.03 1.87 16 28 C -0.02 -0.24 9.39 -38.87 -0.37 -0.60 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 31 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 32 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.16 1.71 6.42 -52.49 -0.34 1.37 16 34 H 0.40 5.16 6.53 -40.82 -0.27 4.90 16 35 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.18 2.15 8.06 -52.48 -0.42 1.73 16 38 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.11 2.73 6.46 -51.93 -0.34 2.40 16 40 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 41 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.08 1.44 7.94 -51.93 -0.41 1.03 16 43 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.15 1.67 7.74 -52.48 -0.41 1.27 16 LS Contribution 378.83 15.07 5.71 5.71 Total: -1.00 -31.55 378.83 -8.79 -40.34 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -5.95 Total: 7.34 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: -3.38 Total: 7.89 kcal Atomic # 7 Polarization: -66.92 SS G_CDS: -0.23 Total: -67.14 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.70 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.55 -8.79 -40.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069856112.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.856 kcal (2) G-P(sol) polarization free energy of solvation -31.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds