Wall clock time and date at job start Sat Apr 11 2020 06:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38378 * 119.93009 * 2 1 4 4 C 1.38342 * 120.29574 * 179.97438 * 3 2 1 5 5 C 1.37986 * 120.14100 * 359.74492 * 4 3 2 6 6 C 1.39549 * 119.85106 * 0.53216 * 5 4 3 7 7 C 1.47847 * 120.14163 * 179.74657 * 6 5 4 8 8 O 1.21556 * 119.99932 * 179.72222 * 7 6 5 9 9 N 1.34768 * 120.00252 * 359.72462 * 7 6 5 10 10 C 1.46500 * 120.00405 * 180.02562 * 9 7 6 11 11 H 1.09000 * 110.88725 * 31.11730 * 10 9 7 12 12 C 1.54907 * 111.03823 * 267.21141 * 10 9 7 13 13 N 1.47420 * 104.83481 * 278.92117 * 12 10 9 14 14 C 1.36932 * 125.65173 * 156.13272 * 13 12 10 15 15 H 1.08004 * 120.00338 * 341.74859 * 14 13 12 16 16 C 1.38818 * 120.00413 * 161.74317 * 14 13 12 17 17 N 1.31614 * 120.00407 * 156.43297 * 16 14 13 18 18 Si 1.86799 * 119.99690 * 336.43409 * 16 14 13 19 19 H 1.48502 * 109.47661 * 84.68942 * 18 16 14 20 20 H 1.48497 * 109.47222 * 204.69556 * 18 16 14 21 21 H 1.48506 * 109.47141 * 324.69499 * 18 16 14 22 22 C 1.47024 * 108.70282 * 335.86821 * 13 12 10 23 23 C 1.54324 * 107.26965 * 1.06236 * 22 13 12 24 24 H 1.08999 * 110.72045 * 263.82828 * 23 22 13 25 25 N 1.46497 * 110.72269 * 140.73312 * 23 22 13 26 26 C 1.35308 * 125.86657 * 326.16504 * 25 23 22 27 27 C 1.35358 * 106.17184 * 179.90178 * 26 25 23 28 28 N 1.33760 * 106.49664 * 0.35649 * 27 26 25 29 29 N 1.28630 * 108.89103 * 359.77141 * 28 27 26 30 30 C 1.37942 * 119.92659 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.46820 * 269.97587 * 1 2 3 32 32 H 1.09000 * 109.46656 * 29.97647 * 1 2 3 33 33 H 1.08991 * 109.47145 * 149.97600 * 1 2 3 34 34 H 1.07995 * 119.85369 * 359.97438 * 3 2 1 35 35 H 1.07997 * 119.92826 * 180.02562 * 4 3 2 36 36 H 1.08002 * 120.06982 * 180.25939 * 5 4 3 37 37 H 0.96998 * 119.99848 * 359.97438 * 9 7 6 38 38 H 1.08999 * 110.36842 * 160.07550 * 12 10 9 39 39 H 1.09003 * 110.36617 * 37.75395 * 12 10 9 40 40 H 0.97001 * 119.99803 * 180.02562 * 17 16 14 41 41 H 1.09002 * 109.88481 * 120.47398 * 22 13 12 42 42 H 1.08997 * 109.88361 * 241.49021 * 22 13 12 43 43 H 1.08000 * 126.91577 * 0.02562 * 26 25 23 44 44 H 1.08000 * 126.74653 * 180.12347 * 27 26 25 45 45 H 1.08000 * 120.07137 * 0.02804 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1992 0.0000 4 6 3.5808 1.2081 0.0005 5 6 4.2813 0.0192 0.0064 6 6 3.5912 -1.1936 0.0005 7 6 4.3353 -2.4712 0.0011 8 8 3.7315 -3.5262 0.0011 9 7 5.6829 -2.4662 0.0016 10 6 6.4203 -3.7321 0.0016 11 1 5.8627 -4.5065 -0.5251 12 6 6.7603 -4.1776 1.4458 13 7 7.9578 -3.3982 1.8091 14 6 8.3557 -3.0940 3.0835 15 1 7.6522 -3.1637 3.9001 16 6 9.6633 -2.6961 3.3261 17 7 9.9457 -1.9778 4.3922 18 14 11.0223 -3.1803 2.1394 19 1 11.0758 -2.2031 1.0226 20 1 12.3241 -3.1874 2.8539 21 1 10.7472 -4.5357 1.5983 22 6 8.6575 -3.0071 0.5766 23 6 7.8348 -3.5518 -0.6099 24 1 8.2332 -4.5081 -0.9487 25 7 7.8085 -2.5846 -1.7099 26 6 7.8028 -1.2377 -1.5813 27 6 7.7786 -0.7389 -2.8393 28 7 7.7627 -1.7912 -3.6649 29 7 7.7811 -2.8701 -2.9648 30 6 2.1952 -1.1955 -0.0005 31 1 -0.3633 -0.0004 1.0276 32 1 -0.3632 0.8902 -0.5135 33 1 -0.3633 -0.8897 -0.5142 34 1 1.6539 2.1325 -0.0004 35 1 4.1137 2.1474 0.0009 36 1 5.3613 0.0275 0.0110 37 1 6.1647 -1.6243 0.0013 38 1 6.9800 -5.2449 1.4717 39 1 5.9361 -3.9426 2.1193 40 1 10.8593 -1.6995 4.5614 41 1 8.7215 -1.9206 0.5155 42 1 9.6584 -3.4384 0.5658 43 1 7.8171 -0.6739 -0.6602 44 1 7.7696 0.3037 -3.1210 45 1 1.6552 -2.1308 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069892621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:52 Heat of formation + Delta-G solvation = 136.403140 kcal Electronic energy + Delta-G solvation = -30261.111819 eV Core-core repulsion = 26282.407109 eV Total energy + Delta-G solvation = -3978.704709 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.27644 -40.42722 -39.09346 -37.87254 -34.44352 -33.89630 -32.98637 -32.05170 -31.27602 -31.06073 -29.42372 -28.33150 -27.07364 -25.01909 -24.28183 -22.71687 -22.58317 -22.00475 -21.03015 -20.70353 -20.01106 -18.20944 -17.56091 -17.02841 -16.60466 -16.23494 -15.83998 -15.76147 -15.16594 -14.98996 -14.90284 -14.65059 -14.09672 -13.94527 -13.88696 -13.76725 -13.32891 -13.18911 -13.08435 -12.79343 -12.47846 -12.13727 -12.06565 -11.86092 -11.76656 -11.72969 -11.44772 -11.35062 -11.26229 -10.95707 -10.77334 -10.42522 -9.99562 -9.93910 -9.61534 -9.40073 -9.23616 -9.09703 -8.92431 -8.79185 -7.40006 -6.18398 -3.51674 0.71106 1.16701 1.62038 2.25085 2.62349 2.79160 3.06633 3.11347 3.27285 3.31566 3.71928 4.23515 4.29206 4.32626 4.47071 4.53654 4.55685 4.66409 4.68520 4.84401 4.91777 5.05749 5.07236 5.12784 5.16082 5.19196 5.25166 5.35934 5.37411 5.50714 5.56348 5.71936 5.74889 5.81774 5.85643 5.92529 6.06823 6.13832 6.16978 6.18271 6.26685 6.31605 6.49085 6.64971 6.70432 7.31285 7.42956 8.06189 8.15413 8.54465 8.56028 9.41329 9.81266 10.97071 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010847 B = 0.004117 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.846389 B = 6798.617627 C = 7851.889389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.097 4.097 3 C -0.097 4.097 4 C -0.121 4.121 5 C -0.087 4.087 6 C -0.126 4.126 7 C 0.564 3.436 8 O -0.537 6.537 9 N -0.707 5.707 10 C 0.127 3.873 11 H 0.115 0.885 12 C 0.123 3.877 13 N -0.600 5.600 14 C -0.249 4.249 15 H 0.100 0.900 16 C 0.029 3.971 17 N -0.897 5.897 18 Si 0.877 3.123 19 H -0.286 1.286 20 H -0.298 1.298 21 H -0.276 1.276 22 C 0.111 3.889 23 C 0.117 3.883 24 H 0.137 0.863 25 N -0.271 5.271 26 C -0.054 4.054 27 C -0.050 4.050 28 N -0.275 5.275 29 N -0.082 5.082 30 C -0.060 4.060 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.123 0.877 37 H 0.400 0.600 38 H 0.049 0.951 39 H 0.068 0.932 40 H 0.266 0.734 41 H 0.054 0.946 42 H 0.047 0.953 43 H 0.188 0.812 44 H 0.189 0.811 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.751 6.546 -9.920 17.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.097 4.097 3 C -0.115 4.115 4 C -0.139 4.139 5 C -0.106 4.106 6 C -0.129 4.129 7 C 0.352 3.648 8 O -0.415 6.415 9 N -0.359 5.359 10 C 0.020 3.980 11 H 0.133 0.867 12 C -0.003 4.003 13 N -0.328 5.328 14 C -0.375 4.375 15 H 0.117 0.883 16 C -0.171 4.171 17 N -0.539 5.539 18 Si 0.708 3.292 19 H -0.214 1.214 20 H -0.225 1.225 21 H -0.203 1.203 22 C -0.015 4.015 23 C 0.014 3.986 24 H 0.155 0.845 25 N -0.064 5.064 26 C -0.205 4.205 27 C -0.207 4.207 28 N -0.141 5.141 29 N -0.061 5.061 30 C -0.079 4.079 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.144 0.856 35 H 0.148 0.852 36 H 0.141 0.859 37 H 0.237 0.763 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.205 0.795 44 H 0.206 0.794 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.028 4.733 -10.754 17.544 hybrid contribution 1.504 1.039 0.442 1.881 sum -11.523 5.772 -10.313 16.506 Atomic orbital electron populations 1.20794 0.90691 1.02947 1.02596 1.19901 0.96450 0.92794 1.00584 1.21243 0.94311 0.97639 0.98308 1.21092 0.94242 0.98034 1.00512 1.21305 0.99790 0.91922 0.97567 1.19894 0.94375 0.92781 1.05883 1.18223 0.81735 0.89006 0.75847 1.90758 1.68376 1.32430 1.49903 1.45708 1.06100 1.09282 1.74857 1.22569 0.89565 0.87440 0.98446 0.86719 1.22133 0.91291 0.95264 0.91625 1.44662 1.26096 1.61041 1.00959 1.18625 0.95234 1.41427 0.82252 0.88287 1.24952 0.96870 0.98729 0.96501 1.69828 1.20055 1.35223 1.28790 0.87099 0.82632 0.79277 0.80164 1.21388 1.22541 1.20295 1.22031 0.95194 0.99209 0.85055 1.23266 0.98530 0.92576 0.84247 0.84537 1.47330 1.45652 1.06399 1.07024 1.23625 1.10128 0.84643 1.02103 1.23545 1.07657 1.00449 0.89092 1.75075 1.16806 0.95287 1.26918 1.78299 1.19299 1.21457 0.87092 1.21140 0.92521 0.98425 0.95845 0.90935 0.91412 0.91308 0.85628 0.85192 0.85882 0.76308 0.93368 0.91338 0.92350 0.92822 0.93580 0.79473 0.79386 0.84702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.01 36.01 0.36 -0.47 16 2 C -0.10 -0.97 5.87 -104.68 -0.61 -1.59 16 3 C -0.10 -0.88 9.69 -39.49 -0.38 -1.26 16 4 C -0.12 -1.16 10.03 -39.64 -0.40 -1.55 16 5 C -0.09 -0.99 9.54 -39.19 -0.37 -1.37 16 6 C -0.13 -1.70 5.87 -104.97 -0.62 -2.32 16 7 C 0.56 8.86 7.77 -12.33 -0.10 8.76 16 8 O -0.54 -9.79 15.99 5.32 0.09 -9.71 16 9 N -0.71 -10.45 4.62 -52.67 -0.24 -10.69 16 10 C 0.13 1.94 3.29 -65.78 -0.22 1.72 16 11 H 0.12 1.71 7.54 -51.93 -0.39 1.32 16 12 C 0.12 2.17 6.93 -2.53 -0.02 2.15 16 13 N -0.60 -12.53 3.21 -170.07 -0.55 -13.08 16 14 C -0.25 -6.35 10.56 -15.06 -0.16 -6.51 16 15 H 0.10 2.72 8.06 -52.48 -0.42 2.30 16 16 C 0.03 0.78 5.44 -17.43 -0.09 0.69 16 17 N -0.90 -25.63 13.97 55.49 0.78 -24.85 16 18 Si 0.88 20.69 24.39 -169.99 -4.15 16.55 16 19 H -0.29 -6.49 6.84 56.52 0.39 -6.10 16 20 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.28 -6.40 6.87 56.52 0.39 -6.01 16 22 C 0.11 2.07 4.78 -3.06 -0.01 2.05 16 23 C 0.12 1.78 3.85 -66.10 -0.25 1.53 16 24 H 0.14 1.88 8.14 -51.93 -0.42 1.46 16 25 N -0.27 -4.07 3.15 -52.98 -0.17 -4.24 16 26 C -0.05 -0.71 8.49 -17.05 -0.14 -0.85 16 27 C -0.05 -0.64 12.05 -17.74 -0.21 -0.85 16 28 N -0.28 -4.42 12.41 30.23 0.38 -4.05 16 29 N -0.08 -1.36 13.17 60.35 0.79 -0.57 16 30 C -0.06 -0.75 9.24 -39.18 -0.36 -1.11 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 33 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 34 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.12 1.25 6.41 -52.49 -0.34 0.91 16 37 H 0.40 5.44 4.11 -40.82 -0.17 5.27 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.05 0.99 6.03 -51.93 -0.31 0.68 16 42 H 0.05 0.95 3.49 -51.93 -0.18 0.77 16 43 H 0.19 2.07 6.49 -52.49 -0.34 1.73 16 44 H 0.19 1.69 8.06 -52.49 -0.42 1.27 16 45 H 0.14 1.67 7.65 -52.49 -0.40 1.27 16 LS Contribution 366.13 15.07 5.52 5.52 Total: -1.00 -32.23 366.13 -6.67 -38.90 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -5.52 Total: 7.19 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -3.60 Total: -0.98 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: 0.99 Total: -57.47 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.71 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.15 Total: 16.55 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.23 -6.67 -38.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069892621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.306 kcal (2) G-P(sol) polarization free energy of solvation -32.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds