Wall clock time and date at job start Sat Apr 11 2020 06:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38378 * 119.93009 * 2 1 4 4 C 1.38342 * 120.29574 * 179.97438 * 3 2 1 5 5 C 1.37986 * 120.14100 * 359.74492 * 4 3 2 6 6 C 1.39549 * 119.85106 * 0.53216 * 5 4 3 7 7 C 1.47847 * 120.14163 * 179.74657 * 6 5 4 8 8 O 1.21556 * 119.99932 * 179.72222 * 7 6 5 9 9 N 1.34768 * 120.00252 * 359.72462 * 7 6 5 10 10 C 1.46500 * 120.00405 * 180.02562 * 9 7 6 11 11 H 1.09000 * 110.88725 * 31.11730 * 10 9 7 12 12 C 1.54907 * 111.03823 * 267.21141 * 10 9 7 13 13 N 1.47420 * 104.83481 * 278.92117 * 12 10 9 14 14 C 1.36932 * 125.65173 * 156.13272 * 13 12 10 15 15 H 1.08004 * 120.00338 * 341.74859 * 14 13 12 16 16 C 1.38818 * 120.00413 * 161.74317 * 14 13 12 17 17 N 1.31614 * 120.00407 * 156.43297 * 16 14 13 18 18 Si 1.86799 * 119.99690 * 336.43409 * 16 14 13 19 19 H 1.48502 * 109.47661 * 84.68942 * 18 16 14 20 20 H 1.48497 * 109.47222 * 204.69556 * 18 16 14 21 21 H 1.48506 * 109.47141 * 324.69499 * 18 16 14 22 22 C 1.47024 * 108.70282 * 335.86821 * 13 12 10 23 23 C 1.54324 * 107.26965 * 1.06236 * 22 13 12 24 24 H 1.08999 * 110.72045 * 263.82828 * 23 22 13 25 25 N 1.46497 * 110.72269 * 140.73312 * 23 22 13 26 26 C 1.35308 * 125.86657 * 326.16504 * 25 23 22 27 27 C 1.35358 * 106.17184 * 179.90178 * 26 25 23 28 28 N 1.33760 * 106.49664 * 0.35649 * 27 26 25 29 29 N 1.28630 * 108.89103 * 359.77141 * 28 27 26 30 30 C 1.37942 * 119.92659 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.46820 * 269.97587 * 1 2 3 32 32 H 1.09000 * 109.46656 * 29.97647 * 1 2 3 33 33 H 1.08991 * 109.47145 * 149.97600 * 1 2 3 34 34 H 1.07995 * 119.85369 * 359.97438 * 3 2 1 35 35 H 1.07997 * 119.92826 * 180.02562 * 4 3 2 36 36 H 1.08002 * 120.06982 * 180.25939 * 5 4 3 37 37 H 0.96998 * 119.99848 * 359.97438 * 9 7 6 38 38 H 1.08999 * 110.36842 * 160.07550 * 12 10 9 39 39 H 1.09003 * 110.36617 * 37.75395 * 12 10 9 40 40 H 0.97001 * 119.99803 * 180.02562 * 17 16 14 41 41 H 1.09002 * 109.88481 * 120.47398 * 22 13 12 42 42 H 1.08997 * 109.88361 * 241.49021 * 22 13 12 43 43 H 1.08000 * 126.91577 * 0.02562 * 26 25 23 44 44 H 1.08000 * 126.74653 * 180.12347 * 27 26 25 45 45 H 1.08000 * 120.07137 * 0.02804 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1992 0.0000 4 6 3.5808 1.2081 0.0005 5 6 4.2813 0.0192 0.0064 6 6 3.5912 -1.1936 0.0005 7 6 4.3353 -2.4712 0.0011 8 8 3.7315 -3.5262 0.0011 9 7 5.6829 -2.4662 0.0016 10 6 6.4203 -3.7321 0.0016 11 1 5.8627 -4.5065 -0.5251 12 6 6.7603 -4.1776 1.4458 13 7 7.9578 -3.3982 1.8091 14 6 8.3557 -3.0940 3.0835 15 1 7.6522 -3.1637 3.9001 16 6 9.6633 -2.6961 3.3261 17 7 9.9457 -1.9778 4.3922 18 14 11.0223 -3.1803 2.1394 19 1 11.0758 -2.2031 1.0226 20 1 12.3241 -3.1874 2.8539 21 1 10.7472 -4.5357 1.5983 22 6 8.6575 -3.0071 0.5766 23 6 7.8348 -3.5518 -0.6099 24 1 8.2332 -4.5081 -0.9487 25 7 7.8085 -2.5846 -1.7099 26 6 7.8028 -1.2377 -1.5813 27 6 7.7786 -0.7389 -2.8393 28 7 7.7627 -1.7912 -3.6649 29 7 7.7811 -2.8701 -2.9648 30 6 2.1952 -1.1955 -0.0005 31 1 -0.3633 -0.0004 1.0276 32 1 -0.3632 0.8902 -0.5135 33 1 -0.3633 -0.8897 -0.5142 34 1 1.6539 2.1325 -0.0004 35 1 4.1137 2.1474 0.0009 36 1 5.3613 0.0275 0.0110 37 1 6.1647 -1.6243 0.0013 38 1 6.9800 -5.2449 1.4717 39 1 5.9361 -3.9426 2.1193 40 1 10.8593 -1.6995 4.5614 41 1 8.7215 -1.9206 0.5155 42 1 9.6584 -3.4384 0.5658 43 1 7.8171 -0.6739 -0.6602 44 1 7.7696 0.3037 -3.1210 45 1 1.6552 -2.1308 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001069892621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:51 Heat of formation + Delta-G solvation = 114.810777 kcal Electronic energy + Delta-G solvation = -30262.048134 eV Core-core repulsion = 26282.407109 eV Total energy + Delta-G solvation = -3979.641024 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.40287 -41.56232 -40.18778 -39.09584 -35.95662 -35.07613 -34.09865 -33.56499 -32.21484 -32.12981 -30.88403 -29.71122 -27.79969 -26.66647 -25.35234 -24.02995 -23.71184 -22.83218 -22.44359 -21.89627 -21.22615 -19.51219 -18.66787 -18.64996 -17.97358 -17.27707 -17.19562 -16.82357 -16.29947 -16.17359 -15.92167 -15.70350 -15.45986 -15.40493 -14.96061 -14.73739 -14.59940 -14.54169 -14.27451 -14.03965 -13.45869 -13.41079 -13.15802 -13.07469 -12.98799 -12.87882 -12.77641 -12.58124 -12.40532 -12.34817 -12.03050 -11.96297 -11.58862 -11.23477 -11.10550 -10.90644 -10.50216 -10.33181 -9.94934 -9.70133 -9.20883 -8.23190 -5.52486 -0.19387 0.36379 0.50433 1.07397 1.23600 1.37323 1.44283 1.56071 1.72675 1.91619 2.33590 2.81197 2.87017 2.96854 3.06053 3.18782 3.52290 3.53325 3.65941 3.79659 3.87639 3.94479 4.06439 4.13532 4.20851 4.24583 4.31228 4.36111 4.37724 4.45750 4.66673 4.67865 4.70563 4.79929 4.83133 4.87533 4.97273 5.17011 5.21393 5.25563 5.30138 5.40102 5.49594 5.52688 5.55677 5.93824 6.03827 6.25052 6.60928 6.96285 7.41632 7.43305 7.90984 8.96005 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010847 B = 0.004117 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.846389 B = 6798.617627 C = 7851.889389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.100 4.100 3 C -0.091 4.091 4 C -0.119 4.119 5 C -0.096 4.096 6 C -0.153 4.153 7 C 0.560 3.440 8 O -0.572 6.572 9 N -0.703 5.703 10 C 0.138 3.862 11 H 0.121 0.879 12 C 0.124 3.876 13 N -0.610 5.610 14 C -0.235 4.235 15 H 0.066 0.934 16 C -0.021 4.021 17 N -0.944 5.944 18 Si 0.935 3.065 19 H -0.269 1.269 20 H -0.311 1.311 21 H -0.268 1.268 22 C 0.111 3.889 23 C 0.133 3.867 24 H 0.155 0.845 25 N -0.275 5.275 26 C -0.057 4.057 27 C -0.040 4.040 28 N -0.299 5.299 29 N -0.108 5.108 30 C -0.080 4.080 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.159 0.841 35 H 0.160 0.840 36 H 0.132 0.868 37 H 0.405 0.595 38 H 0.063 0.937 39 H 0.051 0.949 40 H 0.265 0.735 41 H 0.059 0.941 42 H 0.037 0.963 43 H 0.208 0.792 44 H 0.227 0.773 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.263 8.515 -11.875 19.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.100 4.100 3 C -0.109 4.109 4 C -0.137 4.137 5 C -0.114 4.114 6 C -0.156 4.156 7 C 0.350 3.650 8 O -0.453 6.453 9 N -0.355 5.355 10 C 0.030 3.970 11 H 0.139 0.861 12 C -0.002 4.002 13 N -0.338 5.338 14 C -0.363 4.363 15 H 0.084 0.916 16 C -0.217 4.217 17 N -0.590 5.590 18 Si 0.765 3.235 19 H -0.195 1.195 20 H -0.239 1.239 21 H -0.194 1.194 22 C -0.015 4.015 23 C 0.029 3.971 24 H 0.172 0.828 25 N -0.068 5.068 26 C -0.207 4.207 27 C -0.198 4.198 28 N -0.164 5.164 29 N -0.087 5.087 30 C -0.099 4.099 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.177 0.823 35 H 0.178 0.822 36 H 0.150 0.850 37 H 0.244 0.756 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.054 0.946 43 H 0.224 0.776 44 H 0.243 0.757 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.555 6.696 -12.766 19.788 hybrid contribution 1.513 0.519 1.080 1.931 sum -12.042 7.215 -11.685 18.265 Atomic orbital electron populations 1.20857 0.88792 1.03962 1.03342 1.20233 0.97917 0.92298 0.99551 1.21686 0.94434 0.98484 0.96263 1.21484 0.94708 0.98409 0.99084 1.21483 1.00390 0.91856 0.97695 1.19869 0.94810 0.92408 1.08520 1.18694 0.81870 0.89596 0.74885 1.90724 1.68999 1.33845 1.51694 1.45684 1.05995 1.09340 1.74507 1.22403 0.89912 0.87992 0.96696 0.86093 1.22201 0.89462 0.95722 0.92795 1.44564 1.27010 1.61789 1.00427 1.18465 0.94533 1.39728 0.83556 0.91648 1.25464 0.98801 0.99173 0.98249 1.69945 1.20260 1.37441 1.31353 0.86153 0.79153 0.79621 0.78562 1.19491 1.23948 1.19448 1.21996 0.94848 0.99502 0.85117 1.23039 0.97395 0.93271 0.83405 0.82751 1.47289 1.45936 1.06987 1.06590 1.24079 1.09426 0.84015 1.03218 1.24181 1.05756 1.01472 0.88360 1.75055 1.17488 0.96116 1.27751 1.78299 1.20793 1.22068 0.87509 1.21216 0.92393 0.99129 0.97177 0.90224 0.89309 0.91443 0.82328 0.82243 0.85034 0.75612 0.91899 0.93014 0.92607 0.92371 0.94595 0.77582 0.75692 0.85996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 10.01 71.24 0.71 -0.69 16 2 C -0.10 -1.83 5.87 -19.90 -0.12 -1.94 16 3 C -0.09 -1.35 9.69 22.33 0.22 -1.14 16 4 C -0.12 -1.91 10.03 22.23 0.22 -1.68 16 5 C -0.10 -2.02 9.54 22.53 0.21 -1.80 16 6 C -0.15 -4.10 5.87 -20.09 -0.12 -4.22 16 7 C 0.56 17.80 7.77 86.79 0.67 18.47 16 8 O -0.57 -21.52 15.99 -3.89 -0.06 -21.59 16 9 N -0.70 -20.38 4.62 -438.83 -2.03 -22.41 16 10 C 0.14 4.09 3.29 46.38 0.15 4.24 16 11 H 0.12 3.53 7.54 -2.39 -0.02 3.51 16 12 C 0.12 4.34 6.93 86.86 0.60 4.94 16 13 N -0.61 -25.23 3.21 -691.99 -2.22 -27.45 16 14 C -0.23 -12.16 10.56 84.04 0.89 -11.27 16 15 H 0.07 3.76 8.06 -2.91 -0.02 3.74 16 16 C -0.02 -1.11 5.44 84.86 0.46 -0.65 16 17 N -0.94 -55.20 13.97 21.65 0.30 -54.90 16 18 Si 0.93 42.50 24.39 68.60 1.67 44.17 16 19 H -0.27 -11.30 6.84 99.48 0.68 -10.62 16 20 H -0.31 -14.71 7.11 99.48 0.71 -14.00 16 21 H -0.27 -11.72 6.87 99.48 0.68 -11.04 16 22 C 0.11 3.93 4.78 86.73 0.41 4.34 16 23 C 0.13 3.79 3.85 46.18 0.18 3.97 16 24 H 0.15 3.89 8.14 -2.39 -0.02 3.87 16 25 N -0.27 -7.68 3.15 -321.54 -1.01 -8.69 16 26 C -0.06 -1.33 8.49 83.49 0.71 -0.62 16 27 C -0.04 -0.91 12.05 83.73 1.01 0.10 16 28 N -0.30 -8.97 12.41 -58.26 -0.72 -9.69 16 29 N -0.11 -3.40 13.17 37.02 0.49 -2.91 16 30 C -0.08 -1.98 9.24 22.53 0.21 -1.77 16 31 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.09 0.73 8.08 -2.39 -0.02 0.72 16 33 H 0.07 0.86 8.08 -2.39 -0.02 0.84 16 34 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 35 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 36 H 0.13 2.42 6.41 -2.91 -0.02 2.40 16 37 H 0.41 10.55 4.11 -92.71 -0.38 10.16 16 38 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 41 H 0.06 2.02 6.03 -2.39 -0.01 2.00 16 42 H 0.04 1.40 3.49 -2.39 -0.01 1.39 16 43 H 0.21 3.92 6.49 -2.91 -0.02 3.90 16 44 H 0.23 3.08 8.06 -2.91 -0.02 3.05 16 45 H 0.12 3.20 7.65 -2.91 -0.02 3.17 16 Total: -1.00 -71.86 366.13 3.46 -68.40 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: 0.61 Total: 24.82 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 6.43 Total: 10.26 kcal Atomic # 7 Polarization: -120.87 SS G_CDS: -5.19 Total: -126.06 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.06 Total: -21.59 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 1.67 Total: 44.17 kcal Total: -71.86 3.46 -68.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069892621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.211 kcal (2) G-P(sol) polarization free energy of solvation -71.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds