Wall clock time and date at job start Sat Apr 11 2020 06:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37975 * 120.07451 * 2 1 4 4 C 1.38331 * 120.14707 * 179.97438 * 3 2 1 5 5 C 1.38381 * 120.29162 * 359.95417 * 4 3 2 6 6 C 1.37937 * 120.14726 * 0.28138 * 5 4 3 7 7 C 1.39556 * 120.07248 * 179.97438 * 2 1 3 8 8 C 1.47852 * 120.14639 * 0.02562 * 7 2 1 9 9 O 1.21547 * 119.99694 * 6.04583 * 8 7 2 10 10 N 1.34770 * 119.99839 * 186.05322 * 8 7 2 11 11 C 1.46502 * 119.99980 * 179.97438 * 10 8 7 12 12 H 1.09005 * 110.88420 * 31.11862 * 11 10 8 13 13 C 1.54911 * 111.00382 * 267.19800 * 11 10 8 14 14 N 1.47424 * 104.82930 * 204.91370 * 13 11 10 15 15 C 1.36938 * 125.65245 * 204.07868 * 14 13 11 16 16 H 1.07995 * 120.00623 * 180.02562 * 15 14 13 17 17 C 1.38818 * 119.99424 * 0.05393 * 15 14 13 18 18 N 1.31622 * 120.00214 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99986 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47159 * 59.99928 * 19 17 15 21 21 H 1.48500 * 109.47080 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46840 * 300.00192 * 19 17 15 23 23 C 1.47028 * 108.70518 * 24.12569 * 14 13 11 24 24 C 1.54322 * 107.26951 * 358.93879 * 23 14 13 25 25 H 1.08996 * 110.72061 * 219.44074 * 24 23 14 26 26 N 1.46501 * 110.71834 * 96.16853 * 24 23 14 27 27 C 1.35314 * 125.87142 * 331.48405 * 26 24 23 28 28 C 1.35346 * 106.18039 * 179.97438 * 27 26 24 29 29 N 1.33779 * 106.49621 * 359.97438 * 28 27 26 30 30 N 1.28646 * 108.88068 * 359.73066 * 29 28 27 31 31 H 1.09001 * 109.46912 * 96.59208 * 1 2 3 32 32 H 1.09000 * 109.46831 * 216.59215 * 1 2 3 33 33 H 1.08997 * 109.47137 * 336.59069 * 1 2 3 34 34 H 1.07999 * 119.92328 * 359.97438 * 3 2 1 35 35 H 1.07995 * 119.85574 * 179.97438 * 4 3 2 36 36 H 1.08003 * 119.92744 * 179.97438 * 5 4 3 37 37 H 1.07994 * 120.07668 * 179.72001 * 6 5 4 38 38 H 0.96997 * 120.00355 * 359.97438 * 10 8 7 39 39 H 1.09002 * 110.36594 * 323.74481 * 13 11 10 40 40 H 1.08994 * 110.37129 * 86.07323 * 13 11 10 41 41 H 0.96992 * 120.00360 * 179.97438 * 18 17 15 42 42 H 1.09005 * 109.88097 * 239.52265 * 23 14 13 43 43 H 1.09007 * 110.00831 * 118.43068 * 23 14 13 44 44 H 1.08007 * 126.90998 * 0.02562 * 27 26 24 45 45 H 1.08004 * 126.75616 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1940 0.0000 4 6 3.5818 1.1958 0.0005 5 6 4.2813 0.0018 0.0020 6 6 3.6023 -1.1989 -0.0029 7 6 2.2064 -1.2077 0.0005 8 6 1.4720 -2.4910 0.0005 9 8 0.2617 -2.4985 -0.1108 10 7 2.1446 -3.6522 0.1241 11 6 1.4170 -4.9238 0.1247 12 1 0.5196 -4.8582 -0.4907 13 6 1.0700 -5.3643 1.5688 14 7 0.9291 -6.8298 1.4926 15 6 0.2011 -7.6075 2.3531 16 1 0.1610 -8.6774 2.2117 17 6 -0.4859 -7.0204 3.4068 18 7 -0.4379 -5.7163 3.5786 19 14 -1.4796 -8.0810 4.5803 20 1 -0.5825 -9.0635 5.2400 21 1 -2.1135 -7.2192 5.6103 22 1 -2.5333 -8.8033 3.8231 23 6 1.7007 -7.3184 0.3404 24 6 2.3296 -6.0871 -0.3452 25 1 2.2955 -6.1903 -1.4297 26 7 3.7057 -5.8844 0.1146 27 6 4.1985 -6.2410 1.3234 28 6 5.5005 -5.8712 1.3239 29 7 5.7377 -5.3143 0.1309 30 7 4.6557 -5.3429 -0.5644 31 1 -0.3633 -0.1180 -1.0209 32 1 -0.3633 -0.8251 0.6126 33 1 -0.3633 0.9430 0.4083 34 1 1.6584 2.1293 -0.0004 35 1 4.1182 2.1331 0.0001 36 1 5.3613 0.0100 0.0020 37 1 4.1494 -2.1300 -0.0063 38 1 3.1105 -3.6462 0.2127 39 1 1.8762 -5.0957 2.2514 40 1 0.1329 -4.9093 1.8894 41 1 -0.9182 -5.3060 4.3146 42 1 1.0398 -7.8337 -0.3567 43 1 2.4852 -7.9963 0.6772 44 1 3.6612 -6.7243 2.1260 45 1 6.2087 -6.0003 2.1290 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069892698.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:55 Heat of formation + Delta-G solvation = 136.229165 kcal Electronic energy + Delta-G solvation = -30399.158614 eV Core-core repulsion = 26420.446361 eV Total energy + Delta-G solvation = -3978.712253 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.10453 -40.28975 -38.69830 -37.56004 -34.39116 -33.68871 -32.48785 -31.87885 -31.22275 -30.69626 -28.82932 -27.71828 -26.82766 -25.00640 -23.74491 -22.68599 -22.39511 -21.64859 -20.72745 -20.16290 -20.05443 -18.08397 -17.47473 -17.05641 -16.02608 -15.90746 -15.54426 -15.10750 -14.87986 -14.77529 -14.67702 -14.52077 -14.05320 -13.73274 -13.40584 -13.24639 -13.13627 -12.93217 -12.73109 -12.43176 -12.03659 -11.97060 -11.91960 -11.74653 -11.50590 -11.36880 -11.13278 -11.03404 -10.82178 -10.74138 -10.53571 -10.24096 -10.00095 -9.88169 -9.41289 -9.12596 -9.06082 -8.86472 -8.81977 -8.60509 -7.15580 -5.85615 -3.32671 0.86134 1.29410 1.84230 2.51314 2.78252 3.00623 3.28906 3.30777 3.35366 3.36985 3.85862 4.28317 4.51251 4.66845 4.71448 4.78232 4.82076 4.86379 4.96621 5.04459 5.24688 5.29861 5.34810 5.40721 5.46872 5.52527 5.62275 5.73496 5.76119 5.82100 5.88802 5.92670 6.03774 6.09425 6.16002 6.22401 6.29469 6.35225 6.37884 6.52157 6.66694 6.85088 6.88769 7.12948 7.36970 7.60649 7.69143 8.09253 8.42284 8.71891 8.95721 9.56505 10.13919 11.17294 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010165 B = 0.004267 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2753.906956 B = 6559.819160 C = 8444.142335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.021 4.021 3 C -0.135 4.135 4 C -0.093 4.093 5 C -0.135 4.135 6 C -0.079 4.079 7 C -0.135 4.135 8 C 0.559 3.441 9 O -0.523 6.523 10 N -0.712 5.712 11 C 0.111 3.889 12 H 0.118 0.882 13 C 0.145 3.855 14 N -0.597 5.597 15 C -0.238 4.238 16 H 0.082 0.918 17 C 0.000 4.000 18 N -0.914 5.914 19 Si 0.919 3.081 20 H -0.284 1.284 21 H -0.289 1.289 22 H -0.283 1.283 23 C 0.130 3.870 24 C 0.115 3.885 25 H 0.121 0.879 26 N -0.276 5.276 27 C -0.017 4.017 28 C -0.068 4.068 29 N -0.277 5.277 30 N -0.104 5.104 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.055 0.945 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.395 0.605 39 H 0.021 0.979 40 H 0.123 0.877 41 H 0.257 0.743 42 H 0.056 0.944 43 H 0.042 0.958 44 H 0.194 0.806 45 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.043 8.514 -6.503 13.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.022 4.022 3 C -0.153 4.153 4 C -0.112 4.112 5 C -0.153 4.153 6 C -0.097 4.097 7 C -0.138 4.138 8 C 0.347 3.653 9 O -0.401 6.401 10 N -0.364 5.364 11 C 0.004 3.996 12 H 0.136 0.864 13 C 0.019 3.981 14 N -0.325 5.325 15 C -0.366 4.366 16 H 0.100 0.900 17 C -0.197 4.197 18 N -0.561 5.561 19 Si 0.748 3.252 20 H -0.210 1.210 21 H -0.214 1.214 22 H -0.209 1.209 23 C 0.002 3.998 24 C 0.012 3.988 25 H 0.138 0.862 26 N -0.070 5.070 27 C -0.169 4.169 28 C -0.225 4.225 29 N -0.143 5.143 30 N -0.083 5.083 31 H 0.093 0.907 32 H 0.118 0.882 33 H 0.074 0.926 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.231 0.769 39 H 0.039 0.961 40 H 0.140 0.860 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.059 0.941 44 H 0.211 0.789 45 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 7.401 9.172 -7.740 14.100 hybrid contribution -0.164 -1.149 1.740 2.092 sum 7.237 8.023 -6.000 12.359 Atomic orbital electron populations 1.21112 0.89881 1.03200 1.03694 1.20081 0.97012 0.91383 0.93760 1.21048 0.94244 0.97439 1.02539 1.21314 0.94269 0.98150 0.97434 1.21059 1.00176 0.92105 1.01968 1.21328 0.93039 0.98667 0.96703 1.19849 0.93553 0.93359 1.07083 1.18182 0.87148 0.83482 0.76478 1.90737 1.13314 1.86866 1.49157 1.45724 1.10655 1.05583 1.74461 1.23081 0.93712 0.80018 1.02819 0.86405 1.22410 1.03578 0.84118 0.87975 1.44383 1.56146 1.02581 1.29388 1.18967 1.22903 0.90133 1.04573 0.89989 1.24834 1.00133 0.96030 0.98737 1.69733 1.45835 1.08214 1.32287 0.86105 0.79842 0.78934 0.80280 1.21019 1.21449 1.20917 1.21658 0.95047 0.91678 0.91393 1.23240 0.75276 0.99426 1.00811 0.86165 1.47460 1.10613 1.38089 1.10827 1.23905 0.95869 1.05479 0.91603 1.23551 0.95640 1.05210 0.98104 1.75050 1.17355 1.17885 1.04023 1.78261 0.91891 1.17372 1.20774 0.90719 0.88178 0.92568 0.85479 0.85720 0.85503 0.85982 0.76858 0.96124 0.85998 0.93197 0.92665 0.94066 0.78876 0.79654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.69 8.73 36.01 0.31 -1.37 16 2 C -0.02 -0.30 5.91 -104.22 -0.62 -0.92 16 3 C -0.13 -1.53 9.66 -39.64 -0.38 -1.91 16 4 C -0.09 -0.96 10.04 -39.49 -0.40 -1.36 16 5 C -0.14 -1.52 10.03 -39.64 -0.40 -1.92 16 6 C -0.08 -1.06 9.53 -39.18 -0.37 -1.44 16 7 C -0.14 -2.08 5.87 -104.96 -0.62 -2.70 16 8 C 0.56 9.95 7.70 -12.33 -0.09 9.85 16 9 O -0.52 -10.53 12.98 5.32 0.07 -10.46 16 10 N -0.71 -12.14 5.11 -52.67 -0.27 -12.41 16 11 C 0.11 2.00 3.29 -65.78 -0.22 1.78 16 12 H 0.12 2.22 7.54 -51.93 -0.39 1.82 16 13 C 0.15 3.20 5.17 -2.53 -0.01 3.18 16 14 N -0.60 -13.22 3.39 -170.06 -0.58 -13.80 16 15 C -0.24 -5.93 10.27 -15.06 -0.15 -6.09 16 16 H 0.08 1.96 7.83 -52.49 -0.41 1.54 16 17 C 0.00 -0.01 5.49 -17.43 -0.10 -0.10 16 18 N -0.91 -25.05 10.09 55.49 0.56 -24.49 16 19 Si 0.92 20.69 29.55 -169.99 -5.02 15.66 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 C 0.13 2.25 6.27 -3.06 -0.02 2.23 16 24 C 0.12 1.81 3.97 -66.10 -0.26 1.54 16 25 H 0.12 1.62 8.14 -51.93 -0.42 1.20 16 26 N -0.28 -4.33 2.37 -52.99 -0.13 -4.46 16 27 C -0.02 -0.26 9.35 -17.05 -0.16 -0.42 16 28 C -0.07 -0.97 12.05 -17.73 -0.21 -1.18 16 29 N -0.28 -4.46 12.41 30.24 0.38 -4.09 16 30 N -0.10 -1.69 12.31 60.35 0.74 -0.95 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.10 1.67 5.85 -51.93 -0.30 1.36 16 33 H 0.06 0.63 8.04 -51.93 -0.42 0.21 16 34 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 37 H 0.12 1.65 6.46 -52.49 -0.34 1.31 16 38 H 0.40 6.45 4.89 -40.82 -0.20 6.25 16 39 H 0.02 0.49 7.59 -51.93 -0.39 0.10 16 40 H 0.12 3.23 5.87 -51.93 -0.30 2.93 16 41 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.04 0.70 7.17 -51.93 -0.37 0.33 16 44 H 0.19 3.11 7.70 -52.48 -0.40 2.71 16 45 H 0.19 2.02 8.06 -52.48 -0.42 1.59 16 LS Contribution 366.79 15.07 5.53 5.53 Total: -1.00 -29.30 366.79 -8.05 -37.36 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -5.63 Total: 12.91 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -3.70 Total: -0.82 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: 0.71 Total: -60.19 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.07 Total: -10.46 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.30 -8.05 -37.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069892698.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.586 kcal (2) G-P(sol) polarization free energy of solvation -29.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds