Wall clock time and date at job start Sat Apr 11 2020 06:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37975 * 120.07451 * 2 1 4 4 C 1.38331 * 120.14707 * 179.97438 * 3 2 1 5 5 C 1.38381 * 120.29162 * 359.95417 * 4 3 2 6 6 C 1.37937 * 120.14726 * 0.28138 * 5 4 3 7 7 C 1.39556 * 120.07248 * 179.97438 * 2 1 3 8 8 C 1.47852 * 120.14639 * 0.02562 * 7 2 1 9 9 O 1.21547 * 119.99694 * 6.04583 * 8 7 2 10 10 N 1.34770 * 119.99839 * 186.05322 * 8 7 2 11 11 C 1.46502 * 119.99980 * 179.97438 * 10 8 7 12 12 H 1.09005 * 110.88420 * 31.11862 * 11 10 8 13 13 C 1.54911 * 111.00382 * 267.19800 * 11 10 8 14 14 N 1.47424 * 104.82930 * 204.91370 * 13 11 10 15 15 C 1.36938 * 125.65245 * 204.07868 * 14 13 11 16 16 H 1.07995 * 120.00623 * 180.02562 * 15 14 13 17 17 C 1.38818 * 119.99424 * 0.05393 * 15 14 13 18 18 N 1.31622 * 120.00214 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99986 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47159 * 59.99928 * 19 17 15 21 21 H 1.48500 * 109.47080 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46840 * 300.00192 * 19 17 15 23 23 C 1.47028 * 108.70518 * 24.12569 * 14 13 11 24 24 C 1.54322 * 107.26951 * 358.93879 * 23 14 13 25 25 H 1.08996 * 110.72061 * 219.44074 * 24 23 14 26 26 N 1.46501 * 110.71834 * 96.16853 * 24 23 14 27 27 C 1.35314 * 125.87142 * 331.48405 * 26 24 23 28 28 C 1.35346 * 106.18039 * 179.97438 * 27 26 24 29 29 N 1.33779 * 106.49621 * 359.97438 * 28 27 26 30 30 N 1.28646 * 108.88068 * 359.73066 * 29 28 27 31 31 H 1.09001 * 109.46912 * 96.59208 * 1 2 3 32 32 H 1.09000 * 109.46831 * 216.59215 * 1 2 3 33 33 H 1.08997 * 109.47137 * 336.59069 * 1 2 3 34 34 H 1.07999 * 119.92328 * 359.97438 * 3 2 1 35 35 H 1.07995 * 119.85574 * 179.97438 * 4 3 2 36 36 H 1.08003 * 119.92744 * 179.97438 * 5 4 3 37 37 H 1.07994 * 120.07668 * 179.72001 * 6 5 4 38 38 H 0.96997 * 120.00355 * 359.97438 * 10 8 7 39 39 H 1.09002 * 110.36594 * 323.74481 * 13 11 10 40 40 H 1.08994 * 110.37129 * 86.07323 * 13 11 10 41 41 H 0.96992 * 120.00360 * 179.97438 * 18 17 15 42 42 H 1.09005 * 109.88097 * 239.52265 * 23 14 13 43 43 H 1.09007 * 110.00831 * 118.43068 * 23 14 13 44 44 H 1.08007 * 126.90998 * 0.02562 * 27 26 24 45 45 H 1.08004 * 126.75616 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1940 0.0000 4 6 3.5818 1.1958 0.0005 5 6 4.2813 0.0018 0.0020 6 6 3.6023 -1.1989 -0.0029 7 6 2.2064 -1.2077 0.0005 8 6 1.4720 -2.4910 0.0005 9 8 0.2617 -2.4985 -0.1108 10 7 2.1446 -3.6522 0.1241 11 6 1.4170 -4.9238 0.1247 12 1 0.5196 -4.8582 -0.4907 13 6 1.0700 -5.3643 1.5688 14 7 0.9291 -6.8298 1.4926 15 6 0.2011 -7.6075 2.3531 16 1 0.1610 -8.6774 2.2117 17 6 -0.4859 -7.0204 3.4068 18 7 -0.4379 -5.7163 3.5786 19 14 -1.4796 -8.0810 4.5803 20 1 -0.5825 -9.0635 5.2400 21 1 -2.1135 -7.2192 5.6103 22 1 -2.5333 -8.8033 3.8231 23 6 1.7007 -7.3184 0.3404 24 6 2.3296 -6.0871 -0.3452 25 1 2.2955 -6.1903 -1.4297 26 7 3.7057 -5.8844 0.1146 27 6 4.1985 -6.2410 1.3234 28 6 5.5005 -5.8712 1.3239 29 7 5.7377 -5.3143 0.1309 30 7 4.6557 -5.3429 -0.5644 31 1 -0.3633 -0.1180 -1.0209 32 1 -0.3633 -0.8251 0.6126 33 1 -0.3633 0.9430 0.4083 34 1 1.6584 2.1293 -0.0004 35 1 4.1182 2.1331 0.0001 36 1 5.3613 0.0100 0.0020 37 1 4.1494 -2.1300 -0.0063 38 1 3.1105 -3.6462 0.2127 39 1 1.8762 -5.0957 2.2514 40 1 0.1329 -4.9093 1.8894 41 1 -0.9182 -5.3060 4.3146 42 1 1.0398 -7.8337 -0.3567 43 1 2.4852 -7.9963 0.6772 44 1 3.6612 -6.7243 2.1260 45 1 6.2087 -6.0003 2.1290 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001069892698.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:54 Heat of formation + Delta-G solvation = 118.517814 kcal Electronic energy + Delta-G solvation = -30399.926636 eV Core-core repulsion = 26420.446361 eV Total energy + Delta-G solvation = -3979.480275 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.35224 -41.53754 -39.98618 -38.91560 -35.96831 -35.08879 -33.56491 -33.47483 -32.35632 -31.93973 -30.38474 -29.20800 -27.95997 -26.71608 -24.89477 -24.03648 -23.64685 -22.81493 -22.08589 -21.56294 -21.44214 -19.43529 -18.89053 -18.62388 -17.34319 -17.12213 -16.80506 -16.47480 -16.22838 -16.01006 -15.95721 -15.78334 -15.62585 -14.95182 -14.82987 -14.50052 -14.37495 -14.26718 -14.09206 -13.91746 -13.41781 -13.24321 -13.06980 -12.99208 -12.78355 -12.77882 -12.69354 -12.36322 -12.33668 -12.13827 -12.05386 -11.93436 -11.82690 -11.21193 -10.79149 -10.74947 -10.34170 -10.27441 -9.96303 -9.70360 -9.01723 -7.81402 -5.29202 -0.17974 0.34884 0.57738 1.23420 1.49118 1.50972 1.57365 1.59321 1.77594 1.95118 2.46613 2.80631 3.14071 3.31213 3.34872 3.47624 3.61898 3.68678 3.78613 3.85041 3.87703 4.11521 4.14144 4.23508 4.28939 4.35585 4.37216 4.44180 4.67418 4.69325 4.75106 4.76104 4.78276 4.79922 4.95247 5.04765 5.24816 5.24961 5.33369 5.41369 5.44798 5.46652 5.56554 5.61108 5.69335 5.93036 6.18198 6.31068 6.99076 7.05955 7.47967 7.67476 8.25980 9.19340 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010165 B = 0.004267 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2753.906956 B = 6559.819160 C = 8444.142335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.041 4.041 3 C -0.131 4.131 4 C -0.080 4.080 5 C -0.133 4.133 6 C -0.088 4.088 7 C -0.164 4.164 8 C 0.551 3.449 9 O -0.557 6.557 10 N -0.707 5.707 11 C 0.121 3.879 12 H 0.108 0.892 13 C 0.162 3.838 14 N -0.613 5.613 15 C -0.238 4.238 16 H 0.094 0.906 17 C -0.058 4.058 18 N -0.946 5.946 19 Si 0.978 3.022 20 H -0.274 1.274 21 H -0.301 1.301 22 H -0.277 1.277 23 C 0.130 3.870 24 C 0.131 3.869 25 H 0.152 0.848 26 N -0.277 5.277 27 C -0.029 4.029 28 C -0.054 4.054 29 N -0.289 5.289 30 N -0.110 5.110 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.157 0.843 35 H 0.166 0.834 36 H 0.155 0.845 37 H 0.116 0.884 38 H 0.400 0.600 39 H -0.003 1.003 40 H 0.074 0.926 41 H 0.246 0.754 42 H 0.076 0.924 43 H 0.054 0.946 44 H 0.185 0.815 45 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.324 9.307 -7.430 15.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.042 4.042 3 C -0.149 4.149 4 C -0.098 4.098 5 C -0.151 4.151 6 C -0.107 4.107 7 C -0.167 4.167 8 C 0.341 3.659 9 O -0.437 6.437 10 N -0.359 5.359 11 C 0.013 3.987 12 H 0.126 0.874 13 C 0.035 3.965 14 N -0.340 5.340 15 C -0.366 4.366 16 H 0.112 0.888 17 C -0.251 4.251 18 N -0.595 5.595 19 Si 0.807 3.193 20 H -0.200 1.200 21 H -0.228 1.228 22 H -0.203 1.203 23 C 0.004 3.996 24 C 0.028 3.972 25 H 0.169 0.831 26 N -0.071 5.071 27 C -0.181 4.181 28 C -0.211 4.211 29 N -0.155 5.155 30 N -0.089 5.089 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.175 0.825 35 H 0.183 0.817 36 H 0.172 0.828 37 H 0.134 0.866 38 H 0.237 0.763 39 H 0.015 0.985 40 H 0.092 0.908 41 H 0.055 0.945 42 H 0.093 0.907 43 H 0.072 0.928 44 H 0.202 0.798 45 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 9.728 9.936 -8.701 16.404 hybrid contribution -0.790 -1.340 2.016 2.546 sum 8.938 8.597 -6.685 14.088 Atomic orbital electron populations 1.20989 0.90450 1.03005 1.02879 1.20263 0.96978 0.92124 0.94806 1.21402 0.95054 0.97307 1.01115 1.21798 0.93908 0.99389 0.94681 1.21433 1.01621 0.91462 1.00565 1.21364 0.92181 0.99706 0.97452 1.19802 0.94455 0.92412 1.10019 1.18779 0.87016 0.84543 0.75572 1.90720 1.14811 1.87434 1.50773 1.45657 1.10729 1.05180 1.74298 1.22694 0.94528 0.81497 0.99959 0.87380 1.21910 1.00244 0.84338 0.90001 1.44510 1.56564 1.02553 1.30402 1.19384 1.21867 0.90943 1.04378 0.88825 1.25599 1.01870 0.96919 1.00762 1.70031 1.47135 1.09796 1.32541 0.85155 0.78616 0.77354 0.78193 1.19992 1.22808 1.20304 1.21810 0.95162 0.92502 0.90152 1.23123 0.74894 0.97007 1.02205 0.83057 1.47431 1.10422 1.38242 1.10971 1.23931 0.96476 1.06233 0.91428 1.24060 0.95591 1.03349 0.98106 1.75052 1.17321 1.18367 1.04746 1.78256 0.92065 1.17584 1.21019 0.91098 0.91890 0.89922 0.82533 0.81686 0.82779 0.86592 0.76276 0.98467 0.90818 0.94471 0.90659 0.92843 0.79798 0.76419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.32 8.73 71.24 0.62 -2.70 16 2 C -0.04 -1.13 5.91 -19.61 -0.12 -1.25 16 3 C -0.13 -2.60 9.66 22.23 0.21 -2.39 16 4 C -0.08 -1.33 10.04 22.33 0.22 -1.10 16 5 C -0.13 -2.61 10.03 22.23 0.22 -2.39 16 6 C -0.09 -2.33 9.53 22.53 0.21 -2.11 16 7 C -0.16 -5.15 5.87 -20.09 -0.12 -5.27 16 8 C 0.55 20.77 7.70 86.79 0.67 21.44 16 9 O -0.56 -24.23 12.98 -3.86 -0.05 -24.28 16 10 N -0.71 -25.10 5.11 -438.83 -2.24 -27.34 16 11 C 0.12 4.52 3.29 46.38 0.15 4.67 16 12 H 0.11 4.27 7.54 -2.38 -0.02 4.25 16 13 C 0.16 7.52 5.17 86.86 0.45 7.97 16 14 N -0.61 -27.63 3.39 -691.96 -2.35 -29.98 16 15 C -0.24 -11.95 10.27 84.03 0.86 -11.09 16 16 H 0.09 4.40 7.83 -2.91 -0.02 4.38 16 17 C -0.06 -3.10 5.49 84.86 0.47 -2.64 16 18 N -0.95 -54.72 10.09 21.65 0.22 -54.50 16 19 Si 0.98 43.45 29.55 68.60 2.03 45.48 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 21 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 22 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 23 C 0.13 4.38 6.27 86.73 0.54 4.92 16 24 C 0.13 3.99 3.97 46.18 0.18 4.17 16 25 H 0.15 3.75 8.14 -2.39 -0.02 3.73 16 26 N -0.28 -8.41 2.37 -321.55 -0.76 -9.18 16 27 C -0.03 -0.88 9.35 83.49 0.78 -0.10 16 28 C -0.05 -1.44 12.05 83.73 1.01 -0.43 16 29 N -0.29 -8.79 12.41 -58.25 -0.72 -9.52 16 30 N -0.11 -3.45 12.31 37.02 0.46 -2.99 16 31 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.06 2.28 5.85 -2.39 -0.01 2.26 16 33 H 0.08 1.81 8.04 -2.39 -0.02 1.79 16 34 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 35 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 36 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 37 H 0.12 3.11 6.46 -2.91 -0.02 3.09 16 38 H 0.40 13.33 4.89 -92.71 -0.45 12.88 16 39 H 0.00 -0.13 7.59 -2.39 -0.02 -0.15 16 40 H 0.07 4.21 5.87 -2.39 -0.01 4.20 16 41 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 42 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 43 H 0.05 1.73 7.17 -2.38 -0.02 1.71 16 44 H 0.18 5.93 7.70 -2.91 -0.02 5.91 16 45 H 0.22 4.12 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -67.92 366.79 3.53 -64.38 By element: Atomic # 1 Polarization: 35.64 SS G_CDS: 0.58 Total: 36.22 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: 6.38 Total: 11.70 kcal Atomic # 7 Polarization: -128.10 SS G_CDS: -5.40 Total: -133.51 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.05 Total: -24.28 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -67.92 3.53 -64.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069892698.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.899 kcal (2) G-P(sol) polarization free energy of solvation -67.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds