Wall clock time and date at job start Sat Apr 11 2020 06:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39968 * 120.32146 * 2 1 4 4 N 1.31505 * 120.10440 * 180.02562 * 3 2 1 5 5 C 1.33378 * 120.85191 * 0.02562 * 4 3 2 6 6 C 1.40809 * 132.47536 * 179.97438 * 5 4 3 7 7 C 1.46592 * 126.53738 * 0.02562 * 6 5 4 8 8 O 1.21713 * 119.99824 * 8.44005 * 7 6 5 9 9 N 1.34772 * 119.99755 * 188.44115 * 7 6 5 10 10 C 1.47373 * 125.53118 * 359.43805 * 9 7 6 11 11 C 1.54933 * 105.09877 * 156.51662 * 10 9 7 12 12 C 1.54808 * 101.50324 * 36.73610 * 11 10 9 13 13 H 1.08993 * 113.15121 * 85.60805 * 12 11 10 14 14 C 1.53260 * 109.75010 * 212.29443 * 12 11 10 15 15 N 1.46580 * 108.16295 * 95.75838 * 14 12 11 16 16 C 1.36940 * 125.30926 * 177.88484 * 15 14 12 17 17 H 1.08002 * 119.99310 * 0.02562 * 16 15 14 18 18 C 1.38810 * 120.00084 * 180.02562 * 16 15 14 19 19 N 1.31617 * 119.99908 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99904 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47412 * 59.99564 * 20 18 16 22 22 H 1.48502 * 109.47189 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46869 * 299.99746 * 20 18 16 24 24 C 1.46606 * 109.38449 * 357.89057 * 15 14 12 25 25 C 1.47208 * 125.53147 * 178.40318 * 9 7 6 26 26 H 1.09001 * 112.29017 * 56.24357 * 25 9 7 27 27 C 1.40643 * 106.92127 * 180.28398 * 6 5 4 28 28 N 1.30698 * 108.72612 * 359.55188 * 27 6 5 29 29 N 1.36585 * 120.80490 * 0.02562 * 5 4 3 30 30 C 1.35750 * 120.32292 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.47027 * 90.00091 * 1 2 3 32 32 H 1.09000 * 109.47337 * 210.00068 * 1 2 3 33 33 H 1.09004 * 109.46961 * 330.00519 * 1 2 3 34 34 H 1.07993 * 119.94704 * 0.02562 * 3 2 1 35 35 H 1.08996 * 110.67451 * 37.37824 * 10 9 7 36 36 H 1.08996 * 109.92401 * 275.26765 * 10 9 7 37 37 H 1.09005 * 111.02336 * 278.68106 * 11 10 9 38 38 H 1.09001 * 111.02265 * 154.78917 * 11 10 9 39 39 H 1.09000 * 109.73724 * 215.44989 * 14 12 11 40 40 H 1.09004 * 109.73453 * 336.07423 * 14 12 11 41 41 H 0.97003 * 119.99649 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.91632 * 258.44702 * 24 15 14 43 43 H 1.09004 * 109.91214 * 137.17006 * 24 15 14 44 44 H 1.08002 * 125.63617 * 179.70636 * 27 6 5 45 45 H 1.07994 * 120.42327 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2136 1.2082 0.0000 4 7 3.5287 1.2032 -0.0005 5 6 4.2083 0.0556 -0.0015 6 6 5.5864 -0.2333 -0.0027 7 6 6.6823 0.7404 -0.0026 8 8 6.4447 1.9239 0.1533 9 7 7.9527 0.3250 -0.1752 10 6 8.3787 -1.0734 -0.3620 11 6 9.7410 -0.9859 -1.0947 12 6 10.3654 0.2687 -0.4368 13 1 10.8909 0.0486 0.4923 14 6 11.2479 1.0015 -1.4531 15 7 10.4516 2.0704 -2.0629 16 6 10.9099 2.9684 -2.9897 17 1 11.9348 2.9208 -3.3268 18 6 10.0571 3.9398 -3.4956 19 7 8.8080 3.9974 -3.0850 20 14 10.6820 5.1643 -4.7603 21 1 11.1507 4.4351 -5.9659 22 1 9.5842 6.0907 -5.1370 23 1 11.8082 5.9411 -4.1827 24 6 9.0881 2.0283 -1.5259 25 6 9.1379 1.1965 -0.2291 26 1 9.2335 1.8198 0.6600 27 6 5.7110 -1.6342 -0.0101 28 7 4.5152 -2.1618 -0.0035 29 7 3.5553 -1.1440 -0.0026 30 6 2.1924 -1.1718 -0.0005 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3633 0.8901 0.5138 34 1 1.6780 2.1460 0.0004 35 1 7.6558 -1.6180 -0.9693 36 1 8.4999 -1.5574 0.6071 37 1 9.6003 -0.8368 -2.1653 38 1 10.3467 -1.8712 -0.9012 39 1 12.1135 1.4298 -0.9477 40 1 11.5793 0.3045 -2.2229 41 1 8.2122 4.6765 -3.4383 42 1 8.4202 1.5547 -2.2453 43 1 8.7445 3.0390 -1.3058 44 1 6.6410 -2.1832 -0.0173 45 1 1.6646 -2.1140 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076307927.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:24 Heat of formation + Delta-G solvation = 141.151308 kcal Electronic energy + Delta-G solvation = -29875.336721 eV Core-core repulsion = 25896.837907 eV Total energy + Delta-G solvation = -3978.498813 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.61621 -39.92118 -38.51716 -37.35640 -34.87371 -34.51740 -32.97028 -32.05917 -30.55458 -29.91315 -28.66460 -27.24827 -26.58200 -25.05701 -24.50270 -23.56344 -22.71516 -21.54107 -20.47805 -19.72496 -18.96630 -18.22959 -17.27739 -17.04296 -16.60606 -16.40784 -15.70547 -15.20415 -14.81477 -14.51296 -14.28902 -14.05744 -14.03817 -13.84067 -13.46291 -13.23406 -13.14780 -12.79855 -12.65312 -12.55685 -12.31197 -12.07072 -11.82025 -11.58921 -11.42220 -11.23680 -11.09836 -10.95189 -10.70448 -10.34128 -10.07606 -9.94846 -9.93316 -9.66363 -9.64338 -9.59839 -9.25663 -8.49360 -8.15757 -7.91199 -6.71338 -5.51847 -2.94618 0.21765 0.55218 1.74116 2.09967 3.03714 3.34561 3.48130 3.51615 3.54374 3.65422 3.90008 3.91655 4.04682 4.33504 4.49624 4.58657 4.81051 4.86802 4.93051 4.99919 5.07312 5.08323 5.22080 5.31544 5.41474 5.46571 5.53689 5.61286 5.70670 5.74355 5.75485 5.89164 6.00004 6.04018 6.11881 6.19373 6.35974 6.44082 6.62905 6.73131 6.82915 6.99559 7.12978 7.46975 7.69751 7.74611 8.04439 8.15366 8.49963 8.86790 9.34705 9.95797 10.58335 11.51823 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013721 B = 0.003266 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.159112 B = 8569.832044 C =10128.666639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.189 4.189 3 C 0.183 3.817 4 N -0.429 5.429 5 C 0.310 3.690 6 C -0.268 4.268 7 C 0.604 3.396 8 O -0.514 6.514 9 N -0.606 5.606 10 C 0.090 3.910 11 C -0.122 4.122 12 C -0.110 4.110 13 H 0.087 0.913 14 C 0.145 3.855 15 N -0.602 5.602 16 C -0.233 4.233 17 H 0.077 0.923 18 C -0.007 4.007 19 N -0.912 5.912 20 Si 0.912 3.088 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.166 3.834 25 C 0.119 3.881 26 H 0.082 0.918 27 C 0.108 3.892 28 N -0.316 5.316 29 N -0.305 5.305 30 C 0.155 3.845 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.183 0.817 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.023 0.977 40 H 0.024 0.976 41 H 0.253 0.747 42 H 0.019 0.981 43 H 0.096 0.904 44 H 0.216 0.784 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.012 -15.414 8.864 23.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.195 4.195 3 C 0.000 4.000 4 N -0.138 5.138 5 C 0.079 3.921 6 C -0.284 4.284 7 C 0.393 3.607 8 O -0.389 6.389 9 N -0.341 5.341 10 C -0.034 4.034 11 C -0.160 4.160 12 C -0.129 4.129 13 H 0.106 0.894 14 C 0.019 3.981 15 N -0.329 5.329 16 C -0.361 4.361 17 H 0.095 0.905 18 C -0.204 4.204 19 N -0.559 5.559 20 Si 0.742 3.258 21 H -0.213 1.213 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.040 3.960 25 C 0.016 3.984 26 H 0.100 0.900 27 C -0.071 4.071 28 N -0.138 5.138 29 N -0.073 5.073 30 C 0.020 3.980 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.200 0.800 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.040 0.960 40 H 0.042 0.958 41 H 0.064 0.936 42 H 0.037 0.963 43 H 0.114 0.886 44 H 0.232 0.768 45 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -15.189 -15.022 8.850 23.123 hybrid contribution 0.237 0.434 -0.787 0.930 sum -14.952 -14.588 8.062 22.392 Atomic orbital electron populations 1.20610 0.87493 1.03961 1.03374 1.20611 0.99116 0.92407 1.07367 1.23625 0.89010 0.98560 0.88841 1.68375 1.08401 1.23924 1.13135 1.20362 0.93144 0.81101 0.97487 1.19526 0.90283 0.93588 1.25051 1.16309 0.80141 0.86913 0.77361 1.90887 1.82595 1.16459 1.48935 1.48216 1.05666 1.07553 1.72651 1.22655 0.96916 0.84371 0.99416 1.22803 0.94464 0.97826 1.00879 1.22866 0.96160 0.95067 0.98810 0.89429 1.20979 0.93500 0.90583 0.93039 1.44164 1.07516 1.33068 1.48108 1.18959 0.95668 1.06666 1.14824 0.90493 1.24854 0.95854 0.99420 1.00262 1.69934 1.04320 1.35974 1.45629 0.86207 0.77408 0.81012 0.81138 1.21300 1.21625 1.21155 1.21656 0.86010 1.00095 0.88238 1.22892 0.82024 0.92043 1.01461 0.89980 1.24905 0.96777 0.92868 0.92585 1.77565 0.96332 1.08471 1.31433 1.47021 1.06041 1.07996 1.46269 1.21904 0.79413 1.01136 0.95589 0.90244 0.90834 0.90103 0.79994 0.90647 0.91567 0.89872 0.90317 0.95955 0.95794 0.93610 0.96295 0.88611 0.76835 0.80261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.31 10.03 36.01 0.36 0.05 16 2 C -0.19 -1.41 5.86 -104.87 -0.61 -2.03 16 3 C 0.18 1.90 10.97 -17.04 -0.19 1.71 16 4 N -0.43 -6.99 10.29 -12.00 -0.12 -7.12 16 5 C 0.31 5.21 7.74 -155.84 -1.21 4.00 16 6 C -0.27 -4.72 6.10 -104.65 -0.64 -5.35 16 7 C 0.60 12.66 7.63 -12.89 -0.10 12.56 16 8 O -0.51 -13.05 16.92 5.18 0.09 -12.96 16 9 N -0.61 -11.36 2.88 -163.22 -0.47 -11.83 16 10 C 0.09 1.20 5.20 -2.54 -0.01 1.19 16 11 C -0.12 -1.73 6.24 -24.76 -0.15 -1.88 16 12 C -0.11 -1.87 3.91 -88.33 -0.35 -2.22 16 13 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 14 C 0.15 3.04 6.65 -3.86 -0.03 3.01 16 15 N -0.60 -16.05 3.37 -172.22 -0.58 -16.64 16 16 C -0.23 -6.74 10.25 -15.06 -0.15 -6.90 16 17 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 18 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 19 N -0.91 -28.65 10.17 55.49 0.56 -28.09 16 20 Si 0.91 23.02 29.55 -169.99 -5.02 17.99 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 23 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 24 C 0.17 4.40 4.86 -3.39 -0.02 4.39 16 25 C 0.12 2.50 3.84 -65.75 -0.25 2.24 16 26 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 27 C 0.11 1.48 10.24 -17.13 -0.18 1.31 16 28 N -0.32 -4.32 12.58 30.76 0.39 -3.93 16 29 N -0.31 -4.11 3.86 -11.97 -0.05 -4.16 16 30 C 0.16 1.38 10.94 -16.45 -0.18 1.21 16 31 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.14 8.09 -51.93 -0.42 -0.28 16 33 H 0.08 0.18 8.10 -51.93 -0.42 -0.24 16 34 H 0.18 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.08 0.90 5.37 -51.93 -0.28 0.62 16 36 H 0.07 0.70 7.97 -51.93 -0.41 0.28 16 37 H 0.08 1.39 7.88 -51.93 -0.41 0.98 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.02 0.49 7.74 -51.93 -0.40 0.09 16 41 H 0.25 7.80 8.31 -40.82 -0.34 7.46 16 42 H 0.02 0.56 7.96 -51.93 -0.41 0.15 16 43 H 0.10 2.99 6.22 -51.93 -0.32 2.67 16 44 H 0.22 2.17 4.73 -52.49 -0.25 1.93 16 45 H 0.18 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 363.92 15.07 5.48 5.48 Total: -1.00 -40.15 363.92 -9.35 -49.51 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -5.83 Total: -1.24 kcal Atomic # 6 Polarization: 16.78 SS G_CDS: -3.80 Total: 12.98 kcal Atomic # 7 Polarization: -71.49 SS G_CDS: -0.27 Total: -71.76 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.09 Total: -12.96 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -40.15 -9.35 -49.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076307927.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.657 kcal (2) G-P(sol) polarization free energy of solvation -40.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds