Wall clock time and date at job start Sat Apr 11 2020 06:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33321 * 126.81617 * 2 1 4 4 N 1.28509 * 109.43748 * 179.97438 * 3 2 1 5 5 N 1.28707 * 110.64132 * 0.02562 * 4 3 2 6 6 H 0.97008 * 126.03865 * 179.74315 * 5 4 3 7 7 C 1.37004 * 126.81227 * 179.97438 * 2 1 3 8 8 C 1.47241 * 127.18822 * 0.02562 * 7 2 1 9 9 O 1.21609 * 119.99979 * 351.48140 * 8 7 2 10 10 N 1.34781 * 119.99732 * 171.48352 * 8 7 2 11 11 C 1.48145 * 127.83908 * 359.70150 * 10 8 7 12 12 C 1.54386 * 104.61383 * 219.58426 * 11 10 8 13 13 H 1.09004 * 110.34575 * 95.10896 * 12 11 10 14 14 C 1.50704 * 110.34407 * 217.25942 * 12 11 10 15 15 C 1.38233 * 119.99706 * 58.27018 * 14 12 11 16 16 C 1.38237 * 119.99976 * 179.80991 * 15 14 12 17 17 C 1.38234 * 119.99554 * 0.40250 * 16 15 14 18 18 C 1.38227 * 120.00329 * 359.85487 * 17 16 15 19 19 C 1.38234 * 120.00242 * 359.95575 * 18 17 16 20 20 C 1.54283 * 104.96337 * 336.13039 * 12 11 10 21 21 H 1.08989 * 110.34628 * 241.12804 * 20 12 11 22 22 N 1.46507 * 110.34155 * 118.97303 * 20 12 11 23 23 C 1.36942 * 119.99515 * 155.00187 * 22 20 12 24 24 H 1.07995 * 119.99858 * 0.02562 * 23 22 20 25 25 C 1.38806 * 119.99472 * 180.02562 * 23 22 20 26 26 N 1.31613 * 120.00553 * 0.02562 * 25 23 22 27 27 Si 1.86810 * 119.99703 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.46860 * 89.99877 * 27 25 23 29 29 H 1.48505 * 109.46868 * 209.99945 * 27 25 23 30 30 H 1.48491 * 109.47085 * 330.00089 * 27 25 23 31 31 C 1.48147 * 127.83648 * 179.37555 * 10 8 7 32 32 H 1.09000 * 109.47205 * 89.97510 * 1 2 3 33 33 H 1.09004 * 109.47365 * 209.97528 * 1 2 3 34 34 H 1.09007 * 109.47235 * 329.97288 * 1 2 3 35 35 H 1.09005 * 110.40499 * 338.36407 * 11 10 8 36 36 H 1.08998 * 110.40617 * 100.68292 * 11 10 8 37 37 H 1.08005 * 119.99883 * 0.02562 * 15 14 12 38 38 H 1.07997 * 119.99991 * 180.22976 * 16 15 14 39 39 H 1.08002 * 119.99349 * 179.82808 * 17 16 15 40 40 H 1.08004 * 119.99944 * 179.97438 * 18 17 16 41 41 H 1.08000 * 120.00570 * 180.02562 * 19 18 17 42 42 H 0.96993 * 120.00169 * 335.00561 * 22 20 12 43 43 H 0.96999 * 120.00598 * 180.02562 * 26 25 23 44 44 H 1.08988 * 110.40795 * 259.20235 * 31 10 8 45 45 H 1.09007 * 110.40027 * 21.63481 * 31 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0673 0.0000 4 7 3.5324 0.6835 0.0005 5 7 3.6056 -0.6015 0.0004 6 1 4.4212 -1.1267 -0.0028 7 6 2.3279 -1.0969 0.0005 8 6 1.9221 -2.5122 0.0006 9 8 0.7532 -2.8096 0.1562 10 7 2.8461 -3.4782 -0.1718 11 6 4.3036 -3.3148 -0.3805 12 6 4.6677 -4.3801 -1.4369 13 1 4.6624 -3.9415 -2.4348 14 6 6.0183 -4.9769 -1.1353 15 6 6.2443 -5.5968 0.0793 16 6 7.4819 -6.1477 0.3545 17 6 8.4960 -6.0713 -0.5818 18 6 8.2716 -5.4466 -1.7943 19 6 7.0329 -4.8992 -2.0710 20 6 3.5673 -5.4545 -1.3149 21 1 4.0035 -6.4138 -1.0368 22 7 2.8326 -5.5767 -2.5765 23 6 2.1955 -6.7484 -2.8871 24 1 2.2344 -7.5822 -2.2018 25 6 1.4999 -6.8643 -4.0827 26 7 1.4530 -5.8483 -4.9180 27 14 0.6314 -8.4630 -4.5067 28 1 -0.7596 -8.4231 -3.9885 29 1 0.6056 -8.6361 -5.9814 30 1 1.3579 -9.6003 -3.8874 31 6 2.6355 -4.9445 -0.1889 32 1 -0.3633 0.0004 -1.0277 33 1 -0.3634 -0.8902 0.5135 34 1 -0.3634 0.8898 0.5143 35 1 4.5240 -2.3157 -0.7566 36 1 4.8435 -3.4981 0.5485 37 1 5.4528 -5.6539 0.8120 38 1 7.6573 -6.6354 1.3020 39 1 9.4638 -6.4992 -0.3657 40 1 9.0641 -5.3865 -2.5256 41 1 6.8574 -4.4115 -3.0185 42 1 2.7975 -4.8277 -3.1918 43 1 0.9666 -5.9292 -5.7533 44 1 2.9191 -5.3804 0.7690 45 1 1.5959 -5.1764 -0.4203 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081156278.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:38 Heat of formation + Delta-G solvation = 118.821119 kcal Electronic energy + Delta-G solvation = -29761.522490 eV Core-core repulsion = 25782.055367 eV Total energy + Delta-G solvation = -3979.467123 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.47712 -40.29268 -39.02536 -37.41347 -34.58659 -33.79949 -32.74190 -32.36982 -31.00959 -30.90303 -28.77899 -28.11730 -27.43639 -25.15947 -23.82169 -23.35580 -22.63986 -22.22501 -21.30018 -20.29478 -19.72610 -18.13685 -17.33878 -16.94677 -16.75377 -16.49208 -15.92315 -15.65999 -15.07875 -14.93067 -14.61273 -13.95748 -13.82539 -13.74165 -13.44757 -13.33959 -13.28209 -13.08307 -12.85050 -12.67070 -12.58265 -12.29912 -11.92835 -11.79600 -11.44026 -11.25580 -11.19782 -10.98870 -10.87761 -10.79716 -10.74087 -10.58897 -10.19344 -10.01740 -9.84670 -9.36812 -9.21086 -8.92502 -8.79257 -8.58161 -7.11821 -5.89049 -3.20144 0.83514 1.32237 1.39325 2.19566 2.29283 2.80540 3.09637 3.37872 3.43046 3.44632 3.73794 4.03388 4.33417 4.42596 4.50753 4.65086 4.69984 4.78150 4.91268 4.96857 5.02768 5.08591 5.15664 5.31918 5.39406 5.48342 5.52152 5.58803 5.64313 5.66574 5.69621 5.85821 5.91481 5.97323 6.03586 6.06885 6.14095 6.26640 6.39699 6.43867 6.48404 6.49250 6.63526 6.67787 6.98886 7.44256 7.58908 8.01259 8.18714 8.27194 9.39608 9.91170 10.25214 11.32738 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.006866 B = 0.004838 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4077.336117 B = 5786.562658 C = 8951.361504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.058 3.942 3 N -0.271 5.271 4 N -0.054 5.054 5 N -0.381 5.381 6 H 0.449 0.551 7 C -0.060 4.060 8 C 0.613 3.387 9 O -0.508 6.508 10 N -0.609 5.609 11 C 0.099 3.901 12 C -0.073 4.073 13 H 0.097 0.903 14 C -0.061 4.061 15 C -0.116 4.116 16 C -0.119 4.119 17 C -0.128 4.128 18 C -0.118 4.118 19 C -0.109 4.109 20 C 0.179 3.821 21 H 0.076 0.924 22 N -0.710 5.710 23 C -0.251 4.251 24 H 0.073 0.927 25 C -0.005 4.005 26 N -0.928 5.928 27 Si 0.907 3.093 28 H -0.288 1.288 29 H -0.291 1.291 30 H -0.281 1.281 31 C 0.078 3.922 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.385 0.615 43 H 0.257 0.743 44 H 0.063 0.937 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.580 5.558 11.734 17.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.082 4.082 3 N -0.138 5.138 4 N -0.036 5.036 5 N -0.114 5.114 6 H 0.303 0.697 7 C -0.194 4.194 8 C 0.399 3.601 9 O -0.381 6.381 10 N -0.343 5.343 11 C -0.025 4.025 12 C -0.093 4.093 13 H 0.116 0.884 14 C -0.062 4.062 15 C -0.134 4.134 16 C -0.137 4.137 17 C -0.146 4.146 18 C -0.136 4.136 19 C -0.127 4.127 20 C 0.066 3.934 21 H 0.094 0.906 22 N -0.349 5.349 23 C -0.381 4.381 24 H 0.091 0.909 25 C -0.202 4.202 26 N -0.575 5.575 27 Si 0.738 3.262 28 H -0.215 1.215 29 H -0.217 1.217 30 H -0.206 1.206 31 C -0.047 4.047 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.141 0.859 42 H 0.219 0.781 43 H 0.067 0.933 44 H 0.081 0.919 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 11.451 6.648 11.777 17.721 hybrid contribution -0.270 -1.877 -0.647 2.003 sum 11.181 4.772 11.130 16.482 Atomic orbital electron populations 1.20350 0.84791 1.04442 1.04021 1.22327 0.98644 0.86864 1.00351 1.74911 0.95203 1.26059 1.17586 1.78122 1.16095 0.92690 1.16653 1.46313 1.09163 1.07012 1.48926 0.69743 1.22174 0.84853 0.96575 1.15794 1.16217 0.84880 0.81320 0.77718 1.90843 1.16307 1.81191 1.49776 1.48802 1.06935 1.08149 1.70434 1.22750 0.81839 0.98450 0.99505 1.21488 0.92590 0.95956 0.99253 0.88442 1.19650 0.94156 0.98266 0.94141 1.21016 0.97142 0.98441 0.96809 1.21090 0.93402 0.99829 0.99402 1.21108 0.99091 1.00063 0.94304 1.21121 0.97120 0.98395 0.97007 1.21115 0.92746 0.99781 0.99044 1.21274 0.89004 0.95230 0.87852 0.90633 1.42436 1.60156 1.15299 1.17020 1.19198 1.25505 0.91356 1.02061 0.90910 1.24752 1.00699 0.97689 0.97011 1.69650 1.46299 1.30260 1.11244 0.86198 0.79760 0.82858 0.77394 1.21488 1.21713 1.20621 1.23786 1.04793 0.76571 0.99506 0.89840 0.88524 0.90360 0.92029 0.89781 0.86006 0.86279 0.86457 0.86256 0.85931 0.78072 0.93294 0.91862 0.88339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.02 36.01 0.36 -0.61 16 2 C 0.06 0.85 7.29 -82.39 -0.60 0.25 16 3 N -0.27 -4.10 12.35 33.51 0.41 -3.69 16 4 N -0.05 -0.76 13.35 60.35 0.81 0.05 16 5 N -0.38 -4.58 6.43 33.31 0.21 -4.37 16 6 H 0.45 4.00 5.43 -190.33 -1.03 2.97 16 7 C -0.06 -0.87 6.96 -82.33 -0.57 -1.44 16 8 C 0.61 9.92 7.90 -12.60 -0.10 9.82 16 9 O -0.51 -9.73 15.23 5.27 0.08 -9.65 16 10 N -0.61 -8.83 3.31 -170.39 -0.56 -9.40 16 11 C 0.10 1.09 5.67 -2.41 -0.01 1.08 16 12 C -0.07 -0.97 3.05 -90.37 -0.28 -1.24 16 13 H 0.10 1.44 7.46 -51.93 -0.39 1.06 16 14 C -0.06 -0.74 4.75 -104.62 -0.50 -1.24 16 15 C -0.12 -1.25 8.07 -39.58 -0.32 -1.57 16 16 C -0.12 -1.18 10.05 -39.58 -0.40 -1.57 16 17 C -0.13 -1.25 10.05 -39.59 -0.40 -1.65 16 18 C -0.12 -1.24 10.05 -39.59 -0.40 -1.64 16 19 C -0.11 -1.29 9.68 -39.58 -0.38 -1.67 16 20 C 0.18 3.04 3.11 -66.31 -0.21 2.83 16 21 H 0.08 1.30 7.23 -51.93 -0.38 0.93 16 22 N -0.71 -16.19 5.14 -51.86 -0.27 -16.45 16 23 C -0.25 -6.50 9.96 -15.06 -0.15 -6.65 16 24 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 25 C 0.00 -0.13 5.50 -17.44 -0.10 -0.22 16 26 N -0.93 -27.08 13.06 55.49 0.72 -26.36 16 27 Si 0.91 21.71 29.55 -169.99 -5.02 16.69 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 29 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 30 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 31 C 0.08 1.25 6.80 -2.19 -0.01 1.23 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.10 1.29 6.49 -51.93 -0.34 0.95 16 34 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 35 H 0.06 0.58 4.75 -51.93 -0.25 0.34 16 36 H 0.08 0.73 6.98 -51.93 -0.36 0.37 16 37 H 0.12 1.17 7.79 -52.48 -0.41 0.76 16 38 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 39 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 41 H 0.12 1.39 7.97 -52.49 -0.42 0.98 16 42 H 0.38 9.59 7.56 -40.82 -0.31 9.29 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.06 0.84 8.14 -51.94 -0.42 0.41 16 45 H 0.10 1.95 7.80 -51.93 -0.41 1.54 16 LS Contribution 372.83 15.07 5.62 5.62 Total: -1.00 -32.18 372.83 -8.42 -40.61 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -6.36 Total: 11.25 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -4.06 Total: -4.30 kcal Atomic # 7 Polarization: -61.54 SS G_CDS: 1.33 Total: -60.22 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.08 Total: -9.65 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.18 -8.42 -40.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081156278.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.427 kcal (2) G-P(sol) polarization free energy of solvation -32.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds