Wall clock time and date at job start Sat Apr 11 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33321 * 126.81617 * 2 1 4 4 N 1.28509 * 109.43748 * 179.97438 * 3 2 1 5 5 N 1.28707 * 110.64132 * 0.02562 * 4 3 2 6 6 H 0.97008 * 126.03865 * 179.74315 * 5 4 3 7 7 C 1.37004 * 126.81227 * 179.97438 * 2 1 3 8 8 C 1.47241 * 127.18822 * 0.02562 * 7 2 1 9 9 O 1.21609 * 119.99979 * 351.48140 * 8 7 2 10 10 N 1.34781 * 119.99732 * 171.48352 * 8 7 2 11 11 C 1.48145 * 127.83908 * 359.70150 * 10 8 7 12 12 C 1.54386 * 104.61383 * 219.58426 * 11 10 8 13 13 H 1.09004 * 110.34575 * 95.10896 * 12 11 10 14 14 C 1.50704 * 110.34407 * 217.25942 * 12 11 10 15 15 C 1.38233 * 119.99706 * 58.27018 * 14 12 11 16 16 C 1.38237 * 119.99976 * 179.80991 * 15 14 12 17 17 C 1.38234 * 119.99554 * 0.40250 * 16 15 14 18 18 C 1.38227 * 120.00329 * 359.85487 * 17 16 15 19 19 C 1.38234 * 120.00242 * 359.95575 * 18 17 16 20 20 C 1.54283 * 104.96337 * 336.13039 * 12 11 10 21 21 H 1.08989 * 110.34628 * 241.12804 * 20 12 11 22 22 N 1.46507 * 110.34155 * 118.97303 * 20 12 11 23 23 C 1.36942 * 119.99515 * 155.00187 * 22 20 12 24 24 H 1.07995 * 119.99858 * 0.02562 * 23 22 20 25 25 C 1.38806 * 119.99472 * 180.02562 * 23 22 20 26 26 N 1.31613 * 120.00553 * 0.02562 * 25 23 22 27 27 Si 1.86810 * 119.99703 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.46860 * 89.99877 * 27 25 23 29 29 H 1.48505 * 109.46868 * 209.99945 * 27 25 23 30 30 H 1.48491 * 109.47085 * 330.00089 * 27 25 23 31 31 C 1.48147 * 127.83648 * 179.37555 * 10 8 7 32 32 H 1.09000 * 109.47205 * 89.97510 * 1 2 3 33 33 H 1.09004 * 109.47365 * 209.97528 * 1 2 3 34 34 H 1.09007 * 109.47235 * 329.97288 * 1 2 3 35 35 H 1.09005 * 110.40499 * 338.36407 * 11 10 8 36 36 H 1.08998 * 110.40617 * 100.68292 * 11 10 8 37 37 H 1.08005 * 119.99883 * 0.02562 * 15 14 12 38 38 H 1.07997 * 119.99991 * 180.22976 * 16 15 14 39 39 H 1.08002 * 119.99349 * 179.82808 * 17 16 15 40 40 H 1.08004 * 119.99944 * 179.97438 * 18 17 16 41 41 H 1.08000 * 120.00570 * 180.02562 * 19 18 17 42 42 H 0.96993 * 120.00169 * 335.00561 * 22 20 12 43 43 H 0.96999 * 120.00598 * 180.02562 * 26 25 23 44 44 H 1.08988 * 110.40795 * 259.20235 * 31 10 8 45 45 H 1.09007 * 110.40027 * 21.63481 * 31 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0673 0.0000 4 7 3.5324 0.6835 0.0005 5 7 3.6056 -0.6015 0.0004 6 1 4.4212 -1.1267 -0.0028 7 6 2.3279 -1.0969 0.0005 8 6 1.9221 -2.5122 0.0006 9 8 0.7532 -2.8096 0.1562 10 7 2.8461 -3.4782 -0.1718 11 6 4.3036 -3.3148 -0.3805 12 6 4.6677 -4.3801 -1.4369 13 1 4.6624 -3.9415 -2.4348 14 6 6.0183 -4.9769 -1.1353 15 6 6.2443 -5.5968 0.0793 16 6 7.4819 -6.1477 0.3545 17 6 8.4960 -6.0713 -0.5818 18 6 8.2716 -5.4466 -1.7943 19 6 7.0329 -4.8992 -2.0710 20 6 3.5673 -5.4545 -1.3149 21 1 4.0035 -6.4138 -1.0368 22 7 2.8326 -5.5767 -2.5765 23 6 2.1955 -6.7484 -2.8871 24 1 2.2344 -7.5822 -2.2018 25 6 1.4999 -6.8643 -4.0827 26 7 1.4530 -5.8483 -4.9180 27 14 0.6314 -8.4630 -4.5067 28 1 -0.7596 -8.4231 -3.9885 29 1 0.6056 -8.6361 -5.9814 30 1 1.3579 -9.6003 -3.8874 31 6 2.6355 -4.9445 -0.1889 32 1 -0.3633 0.0004 -1.0277 33 1 -0.3634 -0.8902 0.5135 34 1 -0.3634 0.8898 0.5143 35 1 4.5240 -2.3157 -0.7566 36 1 4.8435 -3.4981 0.5485 37 1 5.4528 -5.6539 0.8120 38 1 7.6573 -6.6354 1.3020 39 1 9.4638 -6.4992 -0.3657 40 1 9.0641 -5.3865 -2.5256 41 1 6.8574 -4.4115 -3.0185 42 1 2.7975 -4.8277 -3.1918 43 1 0.9666 -5.9292 -5.7533 44 1 2.9191 -5.3804 0.7690 45 1 1.5959 -5.1764 -0.4203 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081156278.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:36 Heat of formation + Delta-G solvation = 97.608331 kcal Electronic energy + Delta-G solvation = -29762.442346 eV Core-core repulsion = 25782.055367 eV Total energy + Delta-G solvation = -3980.386979 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.58745 -41.42874 -40.07414 -38.59816 -36.09908 -35.13810 -33.96733 -33.44360 -32.65736 -31.71525 -30.00225 -29.21553 -28.70452 -26.49226 -25.44353 -24.40829 -23.65074 -23.25202 -22.42533 -21.41907 -20.95126 -19.51445 -18.83021 -18.09947 -17.90386 -17.57659 -17.14131 -16.85986 -16.45713 -16.00461 -15.78661 -15.33782 -15.20344 -15.00196 -14.79113 -14.57660 -14.13026 -14.10013 -13.95676 -13.69027 -13.63306 -13.41543 -13.28041 -13.03564 -12.89757 -12.64468 -12.57080 -12.37525 -12.26626 -12.05170 -11.87453 -11.79031 -11.73008 -11.64839 -11.30346 -11.06348 -10.51504 -10.00242 -9.71977 -9.59077 -8.97962 -7.96878 -5.25660 -0.30628 0.49275 0.58964 1.05076 1.22602 1.46441 1.48113 1.55377 1.64407 1.88439 2.53912 2.90057 2.94693 3.21989 3.37621 3.47180 3.55133 3.61666 3.77514 3.89620 4.02779 4.09873 4.19817 4.24316 4.26327 4.37555 4.38843 4.54124 4.61443 4.67387 4.70823 4.73908 4.77698 4.87776 4.91989 5.04489 5.17898 5.23973 5.26528 5.29355 5.50501 5.51292 5.66718 5.71332 5.78316 6.19688 6.22848 6.24707 6.76439 7.06098 7.31214 8.03692 8.24971 9.26232 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.006866 B = 0.004838 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4077.336117 B = 5786.562658 C = 8951.361504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.052 3.948 3 N -0.288 5.288 4 N -0.052 5.052 5 N -0.358 5.358 6 H 0.462 0.538 7 C -0.068 4.068 8 C 0.611 3.389 9 O -0.546 6.546 10 N -0.608 5.608 11 C 0.102 3.898 12 C -0.060 4.060 13 H 0.077 0.923 14 C -0.074 4.074 15 C -0.120 4.120 16 C -0.120 4.120 17 C -0.128 4.128 18 C -0.126 4.126 19 C -0.127 4.127 20 C 0.175 3.825 21 H 0.079 0.921 22 N -0.724 5.724 23 C -0.238 4.238 24 H 0.081 0.919 25 C -0.071 4.071 26 N -0.969 5.969 27 Si 0.966 3.034 28 H -0.292 1.292 29 H -0.299 1.299 30 H -0.265 1.265 31 C 0.086 3.914 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.122 0.878 37 H 0.136 0.864 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.134 0.866 41 H 0.115 0.885 42 H 0.370 0.630 43 H 0.249 0.751 44 H 0.101 0.899 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.870 5.082 13.920 20.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.088 4.088 3 N -0.154 5.154 4 N -0.034 5.034 5 N -0.094 5.094 6 H 0.319 0.681 7 C -0.202 4.202 8 C 0.397 3.603 9 O -0.423 6.423 10 N -0.341 5.341 11 C -0.021 4.021 12 C -0.080 4.080 13 H 0.095 0.905 14 C -0.075 4.075 15 C -0.138 4.138 16 C -0.138 4.138 17 C -0.146 4.146 18 C -0.144 4.144 19 C -0.145 4.145 20 C 0.064 3.936 21 H 0.096 0.904 22 N -0.363 5.363 23 C -0.370 4.370 24 H 0.099 0.901 25 C -0.263 4.263 26 N -0.619 5.619 27 Si 0.795 3.205 28 H -0.219 1.219 29 H -0.225 1.225 30 H -0.190 1.190 31 C -0.038 4.038 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.118 0.882 35 H 0.097 0.903 36 H 0.140 0.860 37 H 0.154 0.846 38 H 0.162 0.838 39 H 0.159 0.841 40 H 0.152 0.848 41 H 0.133 0.867 42 H 0.202 0.798 43 H 0.058 0.942 44 H 0.119 0.881 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.821 6.156 14.023 20.629 hybrid contribution -0.834 -1.740 -1.247 2.297 sum 12.987 4.416 12.776 18.745 Atomic orbital electron populations 1.20385 0.83837 1.04984 1.04256 1.22674 0.99539 0.86852 0.99773 1.74920 0.95536 1.26396 1.18590 1.78069 1.15818 0.93174 1.16290 1.46243 1.09042 1.06540 1.47566 0.68102 1.21903 0.85732 0.95633 1.16947 1.16401 0.84545 0.82048 0.77272 1.90822 1.17913 1.81866 1.51662 1.48809 1.08317 1.07329 1.69630 1.22982 0.79749 0.98728 1.00607 1.21233 0.92414 0.95241 0.99099 0.90476 1.19524 0.93186 0.99633 0.95157 1.21199 0.98105 0.98070 0.96386 1.21429 0.92844 0.99162 1.00384 1.21468 1.00241 0.99140 0.93737 1.21362 0.96936 0.98158 0.97932 1.21217 0.93676 1.00650 0.99004 1.21494 0.89593 0.96789 0.85676 0.90352 1.42605 1.60790 1.13930 1.18927 1.19606 1.23698 0.92301 1.01394 0.90108 1.25484 1.02663 1.00506 0.97644 1.69802 1.48224 1.32234 1.11632 0.85251 0.78512 0.80180 0.76513 1.21923 1.22549 1.18961 1.23522 1.01918 0.77769 1.00636 0.89706 0.89530 0.88209 0.90318 0.86025 0.84585 0.83804 0.84077 0.84770 0.86652 0.79772 0.94195 0.88099 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.89 10.02 71.24 0.71 -1.18 16 2 C 0.05 1.48 7.29 42.04 0.31 1.79 16 3 N -0.29 -8.39 12.35 -47.88 -0.59 -8.98 16 4 N -0.05 -1.36 13.35 37.02 0.49 -0.87 16 5 N -0.36 -7.92 6.43 -48.52 -0.31 -8.24 16 6 H 0.46 6.98 5.43 -219.89 -1.19 5.78 16 7 C -0.07 -1.90 6.96 40.41 0.28 -1.62 16 8 C 0.61 19.57 7.90 86.61 0.68 20.26 16 9 O -0.55 -21.39 15.23 -4.06 -0.06 -21.45 16 10 N -0.61 -16.95 3.31 -811.25 -2.69 -19.64 16 11 C 0.10 2.01 5.67 86.53 0.49 2.50 16 12 C -0.06 -1.53 3.05 -10.63 -0.03 -1.56 16 13 H 0.08 2.32 7.46 -2.38 -0.02 2.30 16 14 C -0.07 -1.65 4.75 -19.86 -0.09 -1.74 16 15 C -0.12 -2.18 8.07 22.27 0.18 -2.00 16 16 C -0.12 -1.92 10.05 22.27 0.22 -1.69 16 17 C -0.13 -2.07 10.05 22.27 0.22 -1.85 16 18 C -0.13 -2.37 10.05 22.27 0.22 -2.14 16 19 C -0.13 -2.86 9.68 22.27 0.22 -2.64 16 20 C 0.17 5.83 3.11 46.04 0.14 5.97 16 21 H 0.08 2.59 7.23 -2.39 -0.02 2.57 16 22 N -0.72 -33.73 5.14 -318.00 -1.63 -35.36 16 23 C -0.24 -12.52 9.96 84.03 0.84 -11.69 16 24 H 0.08 4.03 7.83 -2.91 -0.02 4.00 16 25 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 26 N -0.97 -58.60 13.06 21.65 0.28 -58.32 16 27 Si 0.97 45.46 29.55 68.60 2.03 47.49 16 28 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 29 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 30 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 31 C 0.09 2.68 6.80 86.67 0.59 3.27 16 32 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.09 2.35 6.49 -2.38 -0.02 2.33 16 34 H 0.10 1.98 8.14 -2.38 -0.02 1.97 16 35 H 0.08 1.29 4.75 -2.38 -0.01 1.28 16 36 H 0.12 1.59 6.98 -2.39 -0.02 1.57 16 37 H 0.14 2.03 7.79 -2.91 -0.02 2.01 16 38 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 39 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 40 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 41 H 0.12 2.65 7.97 -2.91 -0.02 2.62 16 42 H 0.37 19.19 7.56 -92.71 -0.70 18.49 16 43 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 44 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 45 H 0.06 2.28 7.80 -2.38 -0.02 2.26 16 Total: -1.00 -72.14 372.83 2.13 -70.01 By element: Atomic # 1 Polarization: 34.01 SS G_CDS: -0.84 Total: 33.18 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 5.45 Total: 2.19 kcal Atomic # 7 Polarization: -126.96 SS G_CDS: -4.45 Total: -131.41 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.06 Total: -21.45 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -72.14 2.13 -70.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081156278.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.615 kcal (2) G-P(sol) polarization free energy of solvation -72.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds