Wall clock time and date at job start Sat Apr 11 2020 06:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39963 * 120.32466 * 2 1 4 4 N 1.31504 * 120.10992 * 179.97438 * 3 2 1 5 5 C 1.33378 * 120.84971 * 359.76634 * 4 3 2 6 6 C 1.40809 * 132.47572 * 179.61502 * 5 4 3 7 7 C 1.46583 * 126.53875 * 0.68670 * 6 5 4 8 8 O 1.21706 * 120.00009 * 359.70728 * 7 6 5 9 9 N 1.34775 * 119.99724 * 179.71607 * 7 6 5 10 10 C 1.47808 * 135.01498 * 359.93887 * 9 7 6 11 11 C 1.54653 * 85.79253 * 153.84898 * 10 9 7 12 12 H 1.08999 * 115.01742 * 139.91591 * 11 10 9 13 13 C 1.53006 * 110.83747 * 270.23481 * 11 10 9 14 14 C 1.53108 * 109.44771 * 143.89270 * 13 11 10 15 15 N 1.46623 * 108.00361 * 301.02151 * 14 13 11 16 16 C 1.36936 * 119.88688 * 237.30173 * 15 14 13 17 17 H 1.07997 * 120.00148 * 25.30613 * 16 15 14 18 18 C 1.38814 * 119.99866 * 205.29772 * 16 15 14 19 19 N 1.31621 * 119.99821 * 13.63775 * 18 16 15 20 20 Si 1.86796 * 120.00084 * 193.62708 * 18 16 15 21 21 H 1.48496 * 109.46957 * 90.00494 * 20 18 16 22 22 H 1.48508 * 109.47109 * 210.00568 * 20 18 16 23 23 H 1.48503 * 109.47096 * 330.00300 * 20 18 16 24 24 C 1.45060 * 120.50423 * 56.71973 * 15 14 13 25 25 C 1.46817 * 135.01148 * 180.02562 * 9 7 6 26 26 H 1.09000 * 111.56059 * 94.43845 * 25 9 7 27 27 C 1.40650 * 106.91976 * 180.42299 * 6 5 4 28 28 N 1.30702 * 108.72803 * 0.24136 * 27 6 5 29 29 N 1.36597 * 120.80014 * 0.51924 * 5 4 3 30 30 C 1.35750 * 120.31856 * 180.02562 * 2 1 3 31 31 H 1.08992 * 109.47171 * 269.97611 * 1 2 3 32 32 H 1.09007 * 109.46938 * 29.97493 * 1 2 3 33 33 H 1.08996 * 109.47313 * 149.96885 * 1 2 3 34 34 H 1.08000 * 119.94760 * 0.02987 * 3 2 1 35 35 H 1.09006 * 113.81943 * 39.63426 * 10 9 7 36 36 H 1.08999 * 113.82215 * 268.06639 * 10 9 7 37 37 H 1.09000 * 109.47897 * 23.90322 * 13 11 10 38 38 H 1.09003 * 109.47869 * 263.88128 * 13 11 10 39 39 H 1.09000 * 109.75461 * 60.64813 * 14 13 11 40 40 H 1.08997 * 109.75306 * 181.39439 * 14 13 11 41 41 H 0.97003 * 119.99572 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.47858 * 200.15010 * 24 15 14 43 43 H 1.08996 * 107.57266 * 82.35326 * 24 15 14 44 44 H 1.07999 * 125.63622 * 180.28291 * 27 6 5 45 45 H 1.07997 * 120.42950 * 359.95244 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2137 1.2081 0.0000 4 7 3.5287 1.2032 0.0005 5 6 4.2083 0.0556 0.0057 6 6 5.5865 -0.2334 0.0005 7 6 6.6823 0.7402 0.0011 8 8 6.4372 1.9323 0.0012 9 7 7.9613 0.3151 0.0014 10 6 8.6238 -1.0062 0.0024 11 6 9.8105 -0.2847 -0.6779 12 1 10.7971 -0.5950 -0.3338 13 6 9.6618 -0.3091 -2.2005 14 6 10.1841 1.0062 -2.7849 15 7 9.4082 2.1028 -2.1974 16 6 8.7259 2.9680 -3.0105 17 1 8.4094 2.6499 -3.9928 18 6 8.4411 4.2539 -2.5721 19 7 9.0448 4.7345 -1.5058 20 14 7.2014 5.3025 -3.4956 21 1 5.8459 5.0775 -2.9325 22 1 7.5639 6.7359 -3.3560 23 1 7.2090 4.9277 -4.9326 24 6 9.3464 2.2725 -0.7581 25 6 9.2740 0.9726 0.0026 26 1 9.6668 1.0811 1.0135 27 6 5.7109 -1.6344 0.0007 28 7 4.5151 -2.1619 0.0004 29 7 3.5552 -1.1441 0.0000 30 6 2.1923 -1.1718 -0.0005 31 1 -0.3633 -0.0004 1.0276 32 1 -0.3633 0.8903 -0.5135 33 1 -0.3634 -0.8897 -0.5143 34 1 1.6781 2.1460 0.0005 35 1 8.1346 -1.7444 -0.6332 36 1 8.8512 -1.3839 0.9992 37 1 8.6104 -0.4303 -2.4611 38 1 10.2358 -1.1412 -2.6085 39 1 11.2386 1.1266 -2.5366 40 1 10.0578 1.0042 -3.8675 41 1 8.8455 5.6329 -1.1992 42 1 8.4769 2.8773 -0.5004 43 1 10.2449 2.8077 -0.4509 44 1 6.6409 -2.1834 0.0017 45 1 1.6645 -2.1141 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084693544.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:40 Heat of formation + Delta-G solvation = 163.262198 kcal Electronic energy + Delta-G solvation = -30466.983491 eV Core-core repulsion = 26489.443478 eV Total energy + Delta-G solvation = -3977.540013 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.52602 -40.23305 -38.48205 -37.11094 -35.09462 -34.43558 -32.85919 -31.99453 -30.09434 -29.98810 -28.69332 -27.02958 -26.81860 -24.98033 -23.83854 -23.58179 -22.32830 -22.10572 -20.82305 -19.82328 -18.59051 -17.60946 -17.23842 -16.90621 -16.33193 -16.11238 -15.57916 -15.21028 -15.04956 -14.25076 -14.10608 -13.94715 -13.89708 -13.61736 -13.29488 -13.18159 -13.07063 -12.86454 -12.75278 -12.53047 -12.48737 -12.22462 -11.84085 -11.49891 -11.39825 -11.10981 -10.94014 -10.57816 -10.51804 -10.34328 -10.08331 -9.86157 -9.77810 -9.70535 -9.58290 -9.49961 -8.75841 -8.16785 -8.06205 -7.81879 -6.46399 -5.53940 -2.96795 0.29064 0.62030 1.80346 2.18640 3.12626 3.39218 3.55425 3.61245 3.65398 3.73262 3.89914 4.08688 4.10742 4.38919 4.54622 4.70512 4.80777 4.94944 5.00815 5.11546 5.13134 5.18046 5.34563 5.41521 5.48573 5.51635 5.57256 5.68571 5.71666 5.79703 5.82885 5.97775 6.08401 6.20974 6.24085 6.35967 6.48081 6.53498 6.66394 6.72571 6.88247 7.10149 7.19823 7.55381 7.66985 7.90793 8.08317 8.49707 8.70157 9.07982 9.48416 10.12443 10.59105 11.53779 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010938 B = 0.004455 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.263107 B = 6284.093836 C = 8154.343090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.189 4.189 3 C 0.181 3.819 4 N -0.427 5.427 5 C 0.307 3.693 6 C -0.263 4.263 7 C 0.611 3.389 8 O -0.503 6.503 9 N -0.630 5.630 10 C 0.088 3.912 11 C -0.108 4.108 12 H 0.086 0.914 13 C -0.118 4.118 14 C 0.149 3.851 15 N -0.584 5.584 16 C -0.254 4.254 17 H 0.060 0.940 18 C 0.014 3.986 19 N -0.902 5.902 20 Si 0.899 3.101 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.283 1.283 24 C 0.166 3.834 25 C 0.128 3.872 26 H 0.072 0.928 27 C 0.116 3.884 28 N -0.317 5.317 29 N -0.306 5.306 30 C 0.154 3.846 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.182 0.818 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.020 0.980 40 H 0.055 0.945 41 H 0.251 0.749 42 H 0.107 0.893 43 H 0.028 0.972 44 H 0.205 0.795 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.455 -16.539 5.808 21.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.195 4.195 3 C -0.003 4.003 4 N -0.136 5.136 5 C 0.076 3.924 6 C -0.279 4.279 7 C 0.400 3.600 8 O -0.377 6.377 9 N -0.367 5.367 10 C -0.036 4.036 11 C -0.127 4.127 12 H 0.104 0.896 13 C -0.157 4.157 14 C 0.022 3.978 15 N -0.306 5.306 16 C -0.383 4.383 17 H 0.078 0.922 18 C -0.185 4.185 19 N -0.547 5.547 20 Si 0.730 3.270 21 H -0.213 1.213 22 H -0.219 1.219 23 H -0.208 1.208 24 C 0.040 3.960 25 C 0.024 3.976 26 H 0.090 0.910 27 C -0.063 4.063 28 N -0.140 5.140 29 N -0.074 5.074 30 C 0.019 3.981 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.199 0.801 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.038 0.962 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.124 0.876 43 H 0.046 0.954 44 H 0.221 0.779 45 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -12.684 -16.079 5.875 21.305 hybrid contribution -0.800 0.317 -0.295 0.909 sum -13.483 -15.762 5.580 21.480 Atomic orbital electron populations 1.20602 0.87543 1.03999 1.03237 1.20597 0.99066 0.92411 1.07456 1.23612 0.89043 0.98527 0.89106 1.68385 1.08374 1.23965 1.12879 1.20395 0.93202 0.81034 0.97745 1.19680 0.90349 0.93640 1.24223 1.16214 0.79731 0.86904 0.77155 1.90918 1.82457 1.15754 1.48610 1.49563 1.03987 1.08754 1.74402 1.23666 0.92305 0.87878 0.99711 1.22853 0.96866 0.96101 0.96916 0.89560 1.21870 1.01494 0.99545 0.92837 1.20727 0.93524 0.87140 0.96399 1.43310 1.55161 1.30958 1.01204 1.19071 1.29094 0.91428 0.98713 0.92193 1.24905 0.99262 0.96313 0.98022 1.70007 1.42484 1.16181 1.25985 0.86340 0.82256 0.79449 0.78989 1.21252 1.21882 1.20821 1.20031 1.03124 0.90129 0.82708 1.22708 0.79014 0.97173 0.98657 0.91011 1.24443 0.96441 0.92784 0.92669 1.77525 0.96363 1.08452 1.31625 1.46997 1.05991 1.07987 1.46448 1.21876 0.79423 1.01064 0.95769 0.90341 0.90107 0.90845 0.80094 0.90850 0.90360 0.92096 0.92785 0.96208 0.92676 0.93869 0.87553 0.95394 0.77877 0.80339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.39 10.03 36.01 0.36 -0.03 16 2 C -0.19 -1.61 5.86 -104.87 -0.61 -2.23 16 3 C 0.18 2.12 10.97 -17.05 -0.19 1.93 16 4 N -0.43 -7.61 10.26 -12.00 -0.12 -7.73 16 5 C 0.31 5.56 7.74 -155.83 -1.21 4.35 16 6 C -0.26 -4.97 6.17 -104.65 -0.65 -5.62 16 7 C 0.61 13.70 7.94 -12.90 -0.10 13.59 16 8 O -0.50 -13.90 15.80 5.18 0.08 -13.82 16 9 N -0.63 -12.20 3.33 -175.55 -0.59 -12.78 16 10 C 0.09 1.19 6.57 -3.00 -0.02 1.17 16 11 C -0.11 -1.69 4.39 -89.96 -0.40 -2.09 16 12 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 13 C -0.12 -2.02 5.66 -26.67 -0.15 -2.17 16 14 C 0.15 3.17 6.48 -3.92 -0.03 3.15 16 15 N -0.58 -15.50 3.01 -175.55 -0.53 -16.03 16 16 C -0.25 -7.54 9.53 -15.06 -0.14 -7.69 16 17 H 0.06 1.77 7.84 -52.49 -0.41 1.36 16 18 C 0.01 0.42 4.96 -17.43 -0.09 0.33 16 19 N -0.90 -28.28 10.90 55.49 0.60 -27.68 16 20 Si 0.90 24.18 29.57 -169.99 -5.03 19.16 16 21 H -0.29 -7.94 7.11 56.52 0.40 -7.53 16 22 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 23 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 24 C 0.17 4.31 4.52 -5.92 -0.03 4.28 16 25 C 0.13 2.56 4.27 -69.57 -0.30 2.27 16 26 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 27 C 0.12 1.73 11.05 -17.12 -0.19 1.54 16 28 N -0.32 -4.66 12.58 30.77 0.39 -4.27 16 29 N -0.31 -4.45 3.86 -11.97 -0.05 -4.49 16 30 C 0.15 1.53 10.94 -16.45 -0.18 1.35 16 31 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.08 0.27 8.10 -51.93 -0.42 -0.15 16 33 H 0.07 0.21 8.08 -51.93 -0.42 -0.21 16 34 H 0.18 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.07 0.86 6.00 -51.93 -0.31 0.55 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 1.16 7.69 -51.93 -0.40 0.76 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.05 1.17 7.88 -51.93 -0.41 0.76 16 41 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 42 H 0.11 3.26 4.83 -51.93 -0.25 3.01 16 43 H 0.03 0.78 7.92 -51.93 -0.41 0.37 16 44 H 0.20 2.30 5.09 -52.49 -0.27 2.03 16 45 H 0.18 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 364.45 15.07 5.49 5.49 Total: -1.00 -40.70 364.45 -9.47 -50.17 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -5.82 Total: -2.15 kcal Atomic # 6 Polarization: 18.04 SS G_CDS: -3.91 Total: 14.14 kcal Atomic # 7 Polarization: -72.70 SS G_CDS: -0.29 Total: -72.99 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.08 Total: -13.82 kcal Atomic # 14 Polarization: 24.18 SS G_CDS: -5.03 Total: 19.16 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -40.70 -9.47 -50.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084693544.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.433 kcal (2) G-P(sol) polarization free energy of solvation -40.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 172.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds