Wall clock time and date at job start Sat Apr 11 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35341 * 125.69154 * 2 1 4 4 N 1.36172 * 107.14355 * 179.97438 * 3 2 1 5 5 C 1.36218 * 133.92745 * 180.02562 * 4 3 2 6 6 C 1.35480 * 120.52260 * 180.02562 * 5 4 3 7 7 N 1.32691 * 122.11429 * 359.77888 * 6 5 4 8 8 C 1.32299 * 121.18512 * 0.47558 * 7 6 5 9 9 C 1.47803 * 120.58967 * 179.78286 * 8 7 6 10 10 O 1.21557 * 120.00123 * 179.72662 * 9 8 7 11 11 N 1.34777 * 119.99707 * 359.97438 * 9 8 7 12 12 C 1.47290 * 136.54610 * 359.35762 * 11 9 8 13 13 C 1.54356 * 87.50751 * 151.47444 * 12 11 9 14 14 H 1.08994 * 115.79560 * 141.80352 * 13 12 11 15 15 C 1.53069 * 111.57165 * 274.17281 * 13 12 11 16 16 C 1.53142 * 109.21408 * 142.37457 * 15 13 12 17 17 N 1.46532 * 108.25486 * 301.59226 * 16 15 13 18 18 C 1.36938 * 119.73707 * 236.39767 * 17 16 15 19 19 H 1.08008 * 120.00285 * 25.20194 * 18 17 16 20 20 C 1.38813 * 120.00332 * 205.19818 * 18 17 16 21 21 N 1.31621 * 119.99823 * 14.48218 * 20 18 17 22 22 Si 1.86801 * 120.00544 * 194.48584 * 20 18 17 23 23 H 1.48500 * 109.47026 * 59.99410 * 22 20 18 24 24 H 1.48490 * 109.47467 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46824 * 300.00007 * 22 20 18 26 26 C 1.45701 * 120.52510 * 56.41593 * 17 16 15 27 27 C 1.46470 * 136.54333 * 179.72850 * 11 9 8 28 28 H 1.08993 * 111.44335 * 97.06033 * 27 11 9 29 29 C 1.37568 * 106.99221 * 359.97438 * 4 3 2 30 30 N 1.31857 * 108.10717 * 0.02562 * 29 4 3 31 31 H 1.09002 * 109.47227 * 270.00083 * 1 2 3 32 32 H 1.08999 * 109.47263 * 29.99570 * 1 2 3 33 33 H 1.08998 * 109.47280 * 149.99667 * 1 2 3 34 34 H 1.08004 * 126.43271 * 359.97438 * 3 2 1 35 35 H 1.07998 * 119.73698 * 359.96807 * 5 4 3 36 36 H 1.07995 * 118.94127 * 180.02562 * 6 5 4 37 37 H 1.09001 * 113.52859 * 266.09796 * 12 11 9 38 38 H 1.08995 * 113.52787 * 36.72775 * 12 11 9 39 39 H 1.09005 * 109.51318 * 22.45296 * 15 13 12 40 40 H 1.09003 * 109.55667 * 262.32764 * 15 13 12 41 41 H 1.09005 * 109.70581 * 181.90142 * 16 15 13 42 42 H 1.09002 * 109.74164 * 61.30670 * 16 15 13 43 43 H 0.96997 * 120.00364 * 180.02562 * 21 20 18 44 44 H 1.09002 * 108.78662 * 199.10892 * 26 17 16 45 45 H 1.09006 * 108.78144 * 80.89962 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2966 1.0992 0.0000 4 7 3.5876 0.6660 0.0006 5 6 4.7956 1.2955 0.0013 6 6 5.9451 0.5786 0.0012 7 7 5.9488 -0.7483 0.0048 8 6 4.8190 -1.4366 -0.0007 9 6 4.8385 -2.9145 -0.0014 10 8 3.7940 -3.5362 -0.0015 11 7 6.0146 -3.5728 0.0031 12 6 7.4424 -3.2112 -0.0022 13 6 7.7110 -4.5342 0.7462 14 1 8.6181 -5.0658 0.4590 15 6 7.5428 -4.3695 2.2586 16 6 6.8980 -5.6334 2.8347 17 7 5.6080 -5.8346 2.1694 18 6 4.4647 -5.9253 2.9176 19 1 4.4199 -5.4647 3.8935 20 6 3.3631 -6.6091 2.4218 21 7 3.4955 -7.4037 1.3809 22 14 1.6926 -6.4015 3.2317 23 1 1.2866 -4.9744 3.1702 24 1 0.6898 -7.2322 2.5180 25 1 1.7735 -6.8324 4.6505 26 6 5.5322 -5.9394 0.7181 27 6 6.4502 -4.9712 0.0089 28 1 6.6896 -5.3182 -0.9962 29 6 3.5502 -0.7091 0.0015 30 7 2.2863 -1.0848 0.0009 31 1 -0.3634 0.0000 1.0277 32 1 -0.3634 0.8900 -0.5138 33 1 -0.3634 -0.8899 -0.5139 34 1 1.9651 2.1271 -0.0004 35 1 4.8372 2.3747 0.0010 36 1 6.8887 1.1039 0.0022 37 1 7.8796 -3.1795 -1.0002 38 1 7.6683 -2.3224 0.5869 39 1 6.9045 -3.5097 2.4625 40 1 8.5185 -4.2159 2.7197 41 1 6.7435 -5.5113 3.9068 42 1 7.5438 -6.4923 2.6519 43 1 2.7257 -7.8812 1.0341 44 1 4.5065 -5.7441 0.4051 45 1 5.7989 -6.9549 0.4251 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084762112.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:45 Heat of formation + Delta-G solvation = 156.877708 kcal Electronic energy + Delta-G solvation = -30747.036676 eV Core-core repulsion = 26769.219810 eV Total energy + Delta-G solvation = -3977.816865 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.08424 -40.42376 -38.68320 -37.43823 -35.10554 -34.45998 -32.04226 -31.87158 -30.27311 -29.94265 -28.73148 -27.97200 -26.79905 -24.78416 -23.69413 -23.41429 -22.67681 -21.08819 -20.86746 -20.16348 -18.43736 -18.31548 -17.41373 -16.42513 -16.35073 -15.86341 -15.59889 -15.58033 -15.27657 -14.54103 -14.13865 -13.93395 -13.80715 -13.53566 -13.30487 -13.23350 -13.12995 -12.95413 -12.59746 -12.38724 -12.34086 -12.23386 -11.79945 -11.40164 -11.28387 -10.99791 -10.56873 -10.52071 -10.39674 -10.32557 -10.08609 -10.07488 -9.76271 -9.66550 -9.44121 -8.96064 -8.85755 -8.33059 -8.19490 -7.98918 -6.48396 -5.54543 -2.96143 0.01840 1.08208 2.17435 2.65821 2.97901 3.10976 3.56557 3.63268 3.69743 3.83527 3.86939 3.93894 4.09042 4.39606 4.71710 4.80840 4.83471 4.92830 4.99209 5.04841 5.33811 5.49568 5.54681 5.55795 5.60486 5.62237 5.69344 5.84210 5.86032 5.90409 5.93149 6.06341 6.23931 6.29668 6.42936 6.44976 6.51718 6.60148 6.62957 6.69395 6.88936 7.11036 7.35668 7.59206 7.80361 7.87702 8.04668 8.34058 8.68647 8.75458 9.46932 10.11220 10.58293 11.53645 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010008 B = 0.005169 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.091492 B = 5415.954153 C = 7528.617352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.058 3.942 3 C -0.087 4.087 4 N -0.356 5.356 5 C 0.021 3.979 6 C 0.029 3.971 7 N -0.430 5.430 8 C 0.202 3.798 9 C 0.591 3.409 10 O -0.470 6.470 11 N -0.612 5.612 12 C 0.107 3.893 13 C -0.118 4.118 14 H 0.093 0.907 15 C -0.115 4.115 16 C 0.149 3.851 17 N -0.584 5.584 18 C -0.253 4.253 19 H 0.060 0.940 20 C 0.014 3.986 21 N -0.904 5.904 22 Si 0.900 3.100 23 H -0.282 1.282 24 H -0.291 1.291 25 H -0.287 1.287 26 C 0.166 3.834 27 C 0.122 3.878 28 H 0.075 0.925 29 C 0.195 3.805 30 N -0.424 5.424 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.188 0.812 35 H 0.172 0.828 36 H 0.181 0.819 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.019 0.981 43 H 0.252 0.748 44 H 0.104 0.896 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.719 20.224 -5.410 21.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.076 4.076 3 C -0.221 4.221 4 N -0.030 5.030 5 C -0.104 4.104 6 C -0.111 4.111 7 N -0.146 5.146 8 C 0.036 3.964 9 C 0.375 3.625 10 O -0.339 6.339 11 N -0.348 5.348 12 C -0.016 4.016 13 C -0.137 4.137 14 H 0.111 0.889 15 C -0.154 4.154 16 C 0.022 3.978 17 N -0.307 5.307 18 C -0.382 4.382 19 H 0.078 0.922 20 C -0.185 4.185 21 N -0.548 5.548 22 Si 0.730 3.270 23 H -0.208 1.208 24 H -0.217 1.217 25 H -0.214 1.214 26 C 0.040 3.960 27 C 0.018 3.982 28 H 0.093 0.907 29 C -0.053 4.053 30 N -0.145 5.145 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.205 0.795 35 H 0.189 0.811 36 H 0.198 0.802 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.037 0.963 43 H 0.062 0.938 44 H 0.122 0.878 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 6.332 18.852 -5.494 20.631 hybrid contribution -1.244 1.871 0.244 2.261 sum 5.088 20.723 -5.250 21.975 Atomic orbital electron populations 1.20182 0.86364 1.03401 1.03151 1.21327 0.97429 0.87627 1.01171 1.22443 0.80368 1.01261 1.17979 1.42837 1.06241 1.09018 1.44886 1.22661 0.83289 1.00527 1.03908 1.22103 0.97456 0.89640 1.01951 1.68279 1.27361 1.08258 1.10653 1.22544 0.83615 0.95270 0.94957 1.16514 0.83037 0.83316 0.79629 1.90995 1.30271 1.66009 1.46651 1.49130 1.04260 1.10029 1.71398 1.23346 0.79939 0.98636 0.99675 1.22835 0.97776 0.96516 0.96571 0.88933 1.21825 0.99548 1.01199 0.92822 1.20721 0.88063 0.93214 0.95817 1.43441 1.01638 1.84607 1.00985 1.19017 0.90702 1.27706 1.00782 0.92206 1.24881 0.98769 0.96519 0.98315 1.69985 1.29200 1.29275 1.26386 0.86411 0.84580 0.77896 0.78130 1.20845 1.21676 1.21351 1.20218 0.99845 0.92967 0.83019 1.22760 0.93318 0.83330 0.98767 0.90688 1.22528 0.94740 0.80095 1.07902 1.70659 0.97799 1.28370 1.17627 0.90411 0.90763 0.90130 0.79465 0.81084 0.80161 0.90729 0.89829 0.92214 0.92745 0.92750 0.96291 0.93786 0.87789 0.95081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 10.42 36.00 0.38 -0.43 16 2 C 0.06 0.87 7.07 -82.87 -0.59 0.28 16 3 C -0.09 -1.03 11.70 -16.66 -0.19 -1.23 16 4 N -0.36 -4.83 2.95 -61.12 -0.18 -5.01 16 5 C 0.02 0.21 11.00 -16.59 -0.18 0.02 16 6 C 0.03 0.29 11.01 -18.17 -0.20 0.09 16 7 N -0.43 -6.24 8.21 -8.68 -0.07 -6.31 16 8 C 0.20 3.74 6.97 -80.54 -0.56 3.18 16 9 C 0.59 13.09 8.00 -12.35 -0.10 12.99 16 10 O -0.47 -12.70 15.47 5.32 0.08 -12.62 16 11 N -0.61 -11.98 3.33 -188.65 -0.63 -12.60 16 12 C 0.11 1.57 6.94 -11.40 -0.08 1.49 16 13 C -0.12 -1.87 4.57 -90.16 -0.41 -2.28 16 14 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 15 C -0.11 -1.99 5.71 -26.62 -0.15 -2.14 16 16 C 0.15 3.17 6.46 -3.95 -0.03 3.14 16 17 N -0.58 -15.41 3.03 -174.89 -0.53 -15.94 16 18 C -0.25 -7.49 9.53 -15.06 -0.14 -7.63 16 19 H 0.06 1.76 7.83 -52.48 -0.41 1.35 16 20 C 0.01 0.42 4.94 -17.43 -0.09 0.33 16 21 N -0.90 -28.18 10.94 55.49 0.61 -27.57 16 22 Si 0.90 24.35 29.58 -169.99 -5.03 19.33 16 23 H -0.28 -7.87 7.11 56.52 0.40 -7.46 16 24 H -0.29 -7.84 7.11 56.52 0.40 -7.44 16 25 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 26 C 0.17 4.23 4.59 -5.43 -0.02 4.21 16 27 C 0.12 2.41 4.03 -77.68 -0.31 2.10 16 28 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 29 C 0.19 3.59 7.66 -153.98 -1.18 2.41 16 30 N -0.42 -8.52 10.74 -7.53 -0.08 -8.60 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.19 1.32 8.06 -52.48 -0.42 0.89 16 35 H 0.17 0.81 8.06 -52.49 -0.42 0.38 16 36 H 0.18 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.08 1.16 7.08 -51.93 -0.37 0.79 16 39 H 0.06 1.17 7.69 -51.93 -0.40 0.77 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.05 1.15 7.87 -51.93 -0.41 0.74 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 44 H 0.10 3.13 4.95 -51.93 -0.26 2.88 16 45 H 0.03 0.85 7.99 -51.93 -0.42 0.43 16 LS Contribution 367.19 15.07 5.53 5.53 Total: -1.00 -39.25 367.19 -10.20 -49.46 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -6.04 Total: -2.20 kcal Atomic # 6 Polarization: 20.40 SS G_CDS: -3.86 Total: 16.54 kcal Atomic # 7 Polarization: -75.15 SS G_CDS: -0.88 Total: -76.03 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.08 Total: -12.62 kcal Atomic # 14 Polarization: 24.35 SS G_CDS: -5.03 Total: 19.33 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -39.25 -10.20 -49.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084762112.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.334 kcal (2) G-P(sol) polarization free energy of solvation -39.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds