Wall clock time and date at job start Sat Apr 11 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35341 * 125.69154 * 2 1 4 4 N 1.36172 * 107.14355 * 179.97438 * 3 2 1 5 5 C 1.36218 * 133.92745 * 180.02562 * 4 3 2 6 6 C 1.35480 * 120.52260 * 180.02562 * 5 4 3 7 7 N 1.32691 * 122.11429 * 359.77888 * 6 5 4 8 8 C 1.32299 * 121.18512 * 0.47558 * 7 6 5 9 9 C 1.47803 * 120.58967 * 179.78286 * 8 7 6 10 10 O 1.21557 * 120.00123 * 179.72662 * 9 8 7 11 11 N 1.34777 * 119.99707 * 359.97438 * 9 8 7 12 12 C 1.47290 * 136.54610 * 359.35762 * 11 9 8 13 13 C 1.54356 * 87.50751 * 151.47444 * 12 11 9 14 14 H 1.08994 * 115.79560 * 141.80352 * 13 12 11 15 15 C 1.53069 * 111.57165 * 274.17281 * 13 12 11 16 16 C 1.53142 * 109.21408 * 142.37457 * 15 13 12 17 17 N 1.46532 * 108.25486 * 301.59226 * 16 15 13 18 18 C 1.36938 * 119.73707 * 236.39767 * 17 16 15 19 19 H 1.08008 * 120.00285 * 25.20194 * 18 17 16 20 20 C 1.38813 * 120.00332 * 205.19818 * 18 17 16 21 21 N 1.31621 * 119.99823 * 14.48218 * 20 18 17 22 22 Si 1.86801 * 120.00544 * 194.48584 * 20 18 17 23 23 H 1.48500 * 109.47026 * 59.99410 * 22 20 18 24 24 H 1.48490 * 109.47467 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46824 * 300.00007 * 22 20 18 26 26 C 1.45701 * 120.52510 * 56.41593 * 17 16 15 27 27 C 1.46470 * 136.54333 * 179.72850 * 11 9 8 28 28 H 1.08993 * 111.44335 * 97.06033 * 27 11 9 29 29 C 1.37568 * 106.99221 * 359.97438 * 4 3 2 30 30 N 1.31857 * 108.10717 * 0.02562 * 29 4 3 31 31 H 1.09002 * 109.47227 * 270.00083 * 1 2 3 32 32 H 1.08999 * 109.47263 * 29.99570 * 1 2 3 33 33 H 1.08998 * 109.47280 * 149.99667 * 1 2 3 34 34 H 1.08004 * 126.43271 * 359.97438 * 3 2 1 35 35 H 1.07998 * 119.73698 * 359.96807 * 5 4 3 36 36 H 1.07995 * 118.94127 * 180.02562 * 6 5 4 37 37 H 1.09001 * 113.52859 * 266.09796 * 12 11 9 38 38 H 1.08995 * 113.52787 * 36.72775 * 12 11 9 39 39 H 1.09005 * 109.51318 * 22.45296 * 15 13 12 40 40 H 1.09003 * 109.55667 * 262.32764 * 15 13 12 41 41 H 1.09005 * 109.70581 * 181.90142 * 16 15 13 42 42 H 1.09002 * 109.74164 * 61.30670 * 16 15 13 43 43 H 0.96997 * 120.00364 * 180.02562 * 21 20 18 44 44 H 1.09002 * 108.78662 * 199.10892 * 26 17 16 45 45 H 1.09006 * 108.78144 * 80.89962 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2966 1.0992 0.0000 4 7 3.5876 0.6660 0.0006 5 6 4.7956 1.2955 0.0013 6 6 5.9451 0.5786 0.0012 7 7 5.9488 -0.7483 0.0048 8 6 4.8190 -1.4366 -0.0007 9 6 4.8385 -2.9145 -0.0014 10 8 3.7940 -3.5362 -0.0015 11 7 6.0146 -3.5728 0.0031 12 6 7.4424 -3.2112 -0.0022 13 6 7.7110 -4.5342 0.7462 14 1 8.6181 -5.0658 0.4590 15 6 7.5428 -4.3695 2.2586 16 6 6.8980 -5.6334 2.8347 17 7 5.6080 -5.8346 2.1694 18 6 4.4647 -5.9253 2.9176 19 1 4.4199 -5.4647 3.8935 20 6 3.3631 -6.6091 2.4218 21 7 3.4955 -7.4037 1.3809 22 14 1.6926 -6.4015 3.2317 23 1 1.2866 -4.9744 3.1702 24 1 0.6898 -7.2322 2.5180 25 1 1.7735 -6.8324 4.6505 26 6 5.5322 -5.9394 0.7181 27 6 6.4502 -4.9712 0.0089 28 1 6.6896 -5.3182 -0.9962 29 6 3.5502 -0.7091 0.0015 30 7 2.2863 -1.0848 0.0009 31 1 -0.3634 0.0000 1.0277 32 1 -0.3634 0.8900 -0.5138 33 1 -0.3634 -0.8899 -0.5139 34 1 1.9651 2.1271 -0.0004 35 1 4.8372 2.3747 0.0010 36 1 6.8887 1.1039 0.0022 37 1 7.8796 -3.1795 -1.0002 38 1 7.6683 -2.3224 0.5869 39 1 6.9045 -3.5097 2.4625 40 1 8.5185 -4.2159 2.7197 41 1 6.7435 -5.5113 3.9068 42 1 7.5438 -6.4923 2.6519 43 1 2.7257 -7.8812 1.0341 44 1 4.5065 -5.7441 0.4051 45 1 5.7989 -6.9549 0.4251 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084762112.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:45 Heat of formation + Delta-G solvation = 127.772032 kcal Electronic energy + Delta-G solvation = -30748.298792 eV Core-core repulsion = 26769.219810 eV Total energy + Delta-G solvation = -3979.078982 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.11058 -41.89829 -39.77569 -38.96339 -37.04075 -35.55181 -33.97722 -32.85829 -31.93518 -31.39562 -30.13601 -29.00117 -28.54372 -25.98142 -25.58750 -24.52873 -24.13256 -22.60805 -22.10065 -21.49253 -19.74695 -19.42135 -19.16749 -17.90514 -17.53308 -17.28643 -17.17066 -16.94735 -16.36698 -16.17627 -15.67716 -15.37468 -15.14172 -15.07025 -14.72435 -14.48586 -14.43598 -14.26381 -14.07736 -13.91813 -13.51275 -13.43472 -13.19442 -13.14165 -12.78521 -12.68162 -12.46852 -12.36211 -12.22534 -11.98214 -11.74129 -11.57511 -11.45980 -11.21108 -10.88602 -10.70240 -10.39899 -9.90323 -9.53670 -9.22391 -8.66080 -7.85205 -5.27842 -1.03902 0.09537 1.19392 1.29877 1.40379 1.43982 1.67062 1.72338 1.83944 2.47485 2.58017 2.74255 2.93665 3.16587 3.30390 3.45570 3.61214 3.74100 3.85546 4.01634 4.05696 4.13575 4.21045 4.23758 4.48832 4.55774 4.63635 4.69150 4.72099 4.74290 4.78567 4.79362 4.93006 4.96595 4.98423 5.06883 5.09372 5.17692 5.34561 5.45367 5.45833 5.55885 5.72783 5.74843 5.84207 6.37413 6.40400 6.76985 6.88798 7.19850 7.23590 7.97765 8.35182 9.18770 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010008 B = 0.005169 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.091492 B = 5415.954153 C = 7528.617352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.024 3.976 3 C -0.061 4.061 4 N -0.355 5.355 5 C 0.057 3.943 6 C 0.013 3.987 7 N -0.410 5.410 8 C 0.141 3.859 9 C 0.580 3.420 10 O -0.550 6.550 11 N -0.619 5.619 12 C 0.123 3.877 13 C -0.101 4.101 14 H 0.138 0.862 15 C -0.103 4.103 16 C 0.140 3.860 17 N -0.602 5.602 18 C -0.256 4.256 19 H 0.055 0.945 20 C -0.041 4.041 21 N -0.929 5.929 22 Si 0.950 3.050 23 H -0.302 1.302 24 H -0.290 1.290 25 H -0.263 1.263 26 C 0.180 3.820 27 C 0.106 3.894 28 H 0.096 0.904 29 C 0.164 3.836 30 N -0.505 5.505 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.055 0.945 34 H 0.247 0.753 35 H 0.238 0.762 36 H 0.237 0.763 37 H 0.110 0.890 38 H 0.098 0.902 39 H 0.033 0.967 40 H 0.103 0.897 41 H 0.048 0.952 42 H 0.032 0.968 43 H 0.244 0.756 44 H 0.049 0.951 45 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.239 25.554 -5.362 28.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.108 4.108 3 C -0.193 4.193 4 N -0.029 5.029 5 C -0.068 4.068 6 C -0.129 4.129 7 N -0.125 5.125 8 C -0.022 4.022 9 C 0.367 3.633 10 O -0.426 6.426 11 N -0.354 5.354 12 C 0.002 3.998 13 C -0.120 4.120 14 H 0.156 0.844 15 C -0.142 4.142 16 C 0.015 3.985 17 N -0.325 5.325 18 C -0.387 4.387 19 H 0.073 0.927 20 C -0.237 4.237 21 N -0.576 5.576 22 Si 0.780 3.220 23 H -0.229 1.229 24 H -0.216 1.216 25 H -0.188 1.188 26 C 0.053 3.947 27 C 0.002 3.998 28 H 0.114 0.886 29 C -0.083 4.083 30 N -0.227 5.227 31 H 0.099 0.901 32 H 0.135 0.865 33 H 0.074 0.926 34 H 0.264 0.736 35 H 0.254 0.746 36 H 0.253 0.747 37 H 0.128 0.872 38 H 0.116 0.884 39 H 0.052 0.948 40 H 0.121 0.879 41 H 0.067 0.933 42 H 0.050 0.950 43 H 0.053 0.947 44 H 0.067 0.933 45 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges 9.922 24.180 -5.423 26.693 hybrid contribution -2.249 0.444 0.245 2.306 sum 7.672 24.624 -5.177 26.306 Atomic orbital electron populations 1.20287 0.84657 1.04254 1.03580 1.22053 0.99003 0.87797 1.01941 1.23245 0.79009 1.02511 1.14548 1.43205 1.08180 1.07493 1.44049 1.23852 0.81344 1.03339 0.98292 1.23105 1.00133 0.87979 1.01701 1.68137 1.25763 1.10648 1.07994 1.21679 0.85218 0.93395 1.01858 1.17206 0.82631 0.85251 0.78237 1.90929 1.32937 1.68216 1.50488 1.49343 1.05826 1.09915 1.70287 1.23527 0.76436 0.98281 1.01589 1.22894 0.96813 0.97172 0.95121 0.84414 1.21701 1.00861 0.97446 0.94165 1.20976 0.86178 0.95805 0.95535 1.43680 1.02728 1.84743 1.01384 1.19288 0.92337 1.26271 1.00761 0.92689 1.25536 1.01610 0.97174 0.99355 1.70142 1.29175 1.30515 1.27760 0.85593 0.81355 0.76403 0.78663 1.22949 1.21618 1.18797 1.19802 0.98424 0.93189 0.83243 1.22819 0.94223 0.82894 0.99894 0.88648 1.22442 0.94203 0.82452 1.09235 1.70547 0.99866 1.31802 1.20504 0.90121 0.86497 0.92616 0.73647 0.74570 0.74724 0.87180 0.88355 0.94801 0.87878 0.93293 0.94990 0.94685 0.93297 0.98203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.57 10.42 71.23 0.74 -0.83 16 2 C 0.02 0.73 7.07 41.62 0.29 1.03 16 3 C -0.06 -1.25 11.70 83.35 0.98 -0.27 16 4 N -0.36 -8.63 2.95 -347.29 -1.02 -9.65 16 5 C 0.06 0.75 11.00 83.37 0.92 1.67 16 6 C 0.01 0.19 11.01 83.93 0.92 1.11 16 7 N -0.41 -10.95 8.21 -181.38 -1.49 -12.44 16 8 C 0.14 5.41 6.97 43.69 0.30 5.71 16 9 C 0.58 27.67 8.00 86.77 0.69 28.36 16 10 O -0.55 -33.33 15.47 -3.90 -0.06 -33.39 16 11 N -0.62 -24.81 3.33 -869.05 -2.89 -27.70 16 12 C 0.12 3.21 6.94 81.18 0.56 3.77 16 13 C -0.10 -2.91 4.57 -10.49 -0.05 -2.96 16 14 H 0.14 2.85 8.14 -2.39 -0.02 2.83 16 15 C -0.10 -3.34 5.71 30.66 0.17 -3.16 16 16 C 0.14 5.97 6.46 86.42 0.56 6.53 16 17 N -0.60 -33.39 3.03 -707.24 -2.14 -35.53 16 18 C -0.26 -16.11 9.53 84.03 0.80 -15.30 16 19 H 0.06 3.42 7.83 -2.91 -0.02 3.40 16 20 C -0.04 -2.67 4.94 84.86 0.42 -2.25 16 21 N -0.93 -62.49 10.94 21.65 0.24 -62.25 16 22 Si 0.95 53.49 29.58 68.60 2.03 55.52 16 23 H -0.30 -17.78 7.11 99.48 0.71 -17.08 16 24 H -0.29 -16.13 7.11 99.48 0.71 -15.43 16 25 H -0.26 -13.60 7.11 99.48 0.71 -12.89 16 26 C 0.18 9.85 4.59 85.91 0.39 10.24 16 27 C 0.11 4.27 4.03 38.69 0.16 4.42 16 28 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 29 C 0.16 6.24 7.66 135.58 1.04 7.28 16 30 N -0.51 -21.91 10.74 -177.74 -1.91 -23.81 16 31 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.05 1.48 8.14 -2.39 -0.02 1.47 16 34 H 0.25 1.84 8.06 -2.91 -0.02 1.82 16 35 H 0.24 0.00 8.06 -2.91 -0.02 -0.02 16 36 H 0.24 0.85 8.06 -2.91 -0.02 0.83 16 37 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.10 2.33 7.08 -2.39 -0.02 2.31 16 39 H 0.03 1.28 7.69 -2.38 -0.02 1.26 16 40 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.05 2.09 7.87 -2.38 -0.02 2.07 16 42 H 0.03 1.29 8.14 -2.39 -0.02 1.28 16 43 H 0.24 16.11 8.31 -92.71 -0.77 15.34 16 44 H 0.05 3.24 4.95 -2.39 -0.01 3.23 16 45 H 0.00 0.01 7.99 -2.38 -0.02 -0.01 16 Total: -1.00 -105.09 367.19 2.67 -102.42 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: 1.02 Total: 1.50 kcal Atomic # 6 Polarization: 36.43 SS G_CDS: 8.91 Total: 45.33 kcal Atomic # 7 Polarization: -162.16 SS G_CDS: -9.22 Total: -171.38 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -0.06 Total: -33.39 kcal Atomic # 14 Polarization: 53.49 SS G_CDS: 2.03 Total: 55.52 kcal Total: -105.09 2.67 -102.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084762112.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 230.187 kcal (2) G-P(sol) polarization free energy of solvation -105.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds