Wall clock time and date at job start Sat Apr 11 2020 06:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33327 * 126.81595 * 2 1 4 4 N 1.28515 * 109.43718 * 180.27604 * 3 2 1 5 5 N 1.28711 * 110.64142 * 359.72845 * 4 3 2 6 6 H 0.96991 * 126.03902 * 180.02562 * 5 4 3 7 7 C 1.37007 * 126.81401 * 179.81837 * 2 1 3 8 8 C 1.47232 * 127.18682 * 359.97438 * 7 2 1 9 9 O 1.21618 * 120.00071 * 359.70647 * 8 7 2 10 10 N 1.34784 * 120.00038 * 179.70902 * 8 7 2 11 11 C 1.46493 * 120.00002 * 179.97438 * 10 8 7 12 12 H 1.08999 * 110.78123 * 31.76702 * 11 10 8 13 13 C 1.54318 * 110.72581 * 268.52359 * 11 10 8 14 14 N 1.47292 * 107.31103 * 219.45682 * 13 11 10 15 15 C 1.36935 * 125.79485 * 178.92456 * 14 13 11 16 16 H 1.08000 * 119.99782 * 174.82802 * 15 14 13 17 17 C 1.38813 * 119.99748 * 354.82496 * 15 14 13 18 18 N 1.31620 * 120.00341 * 7.02995 * 17 15 14 19 19 Si 1.86808 * 119.99539 * 187.02565 * 17 15 14 20 20 H 1.48502 * 109.46896 * 94.99260 * 19 17 15 21 21 H 1.48501 * 109.46951 * 214.98619 * 19 17 15 22 22 H 1.48492 * 109.47136 * 334.98799 * 19 17 15 23 23 C 1.47424 * 108.55382 * 358.92245 * 14 13 11 24 24 C 1.54912 * 104.93008 * 24.15734 * 23 14 13 25 25 H 1.09000 * 111.00375 * 81.00753 * 24 23 14 26 26 C 1.50703 * 111.00435 * 204.82223 * 24 23 14 27 27 C 1.38225 * 120.00125 * 58.27027 * 26 24 23 28 28 C 1.38237 * 120.00256 * 179.81002 * 27 26 24 29 29 C 1.38234 * 119.99687 * 0.39985 * 28 27 26 30 30 C 1.38240 * 120.00088 * 359.85382 * 29 28 27 31 31 C 1.38233 * 119.99713 * 238.54829 * 26 24 23 32 32 H 1.09002 * 109.47471 * 270.18349 * 1 2 3 33 33 H 1.09006 * 109.46757 * 30.18129 * 1 2 3 34 34 H 1.09003 * 109.46970 * 150.17670 * 1 2 3 35 35 H 0.96998 * 119.99292 * 0.02562 * 10 8 7 36 36 H 1.09004 * 109.88141 * 338.86326 * 13 11 10 37 37 H 1.09001 * 109.88609 * 99.86851 * 13 11 10 38 38 H 0.96997 * 119.99818 * 179.97438 * 18 17 15 39 39 H 1.08992 * 110.36982 * 265.26424 * 23 14 13 40 40 H 1.09001 * 110.36388 * 143.04866 * 23 14 13 41 41 H 1.08006 * 120.00080 * 0.02562 * 27 26 24 42 42 H 1.07998 * 120.00200 * 180.22674 * 28 27 26 43 43 H 1.07998 * 120.00116 * 179.83437 * 29 28 27 44 44 H 1.07997 * 119.99826 * 179.97438 * 30 29 28 45 45 H 1.07999 * 120.00496 * 359.97438 * 31 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0674 0.0000 4 7 3.5324 0.6835 -0.0058 5 7 3.6057 -0.6015 -0.0041 6 1 4.4212 -1.1266 -0.0072 7 6 2.3279 -1.0968 0.0035 8 6 1.9221 -2.5121 0.0085 9 8 0.7421 -2.8064 0.0153 10 7 2.8584 -3.4817 0.0056 11 6 2.4546 -4.8899 0.0111 12 1 1.5122 -5.0240 -0.5199 13 6 2.3479 -5.4217 1.4558 14 7 2.8846 -6.7933 1.4587 15 6 2.9889 -7.6103 2.5527 16 1 3.3201 -8.6314 2.4345 17 6 2.6689 -7.1259 3.8136 18 7 2.1350 -5.9298 3.9432 19 14 2.9960 -8.1717 5.3265 20 1 4.3121 -7.8035 5.9076 21 1 1.9281 -7.9364 6.3312 22 1 3.0079 -9.6063 4.9434 23 6 3.2915 -7.1407 0.0850 24 6 3.5643 -5.7815 -0.6063 25 1 4.5549 -5.4052 -0.3511 26 6 3.4001 -5.8927 -2.1002 27 6 2.1953 -6.3099 -2.6340 28 6 2.0435 -6.4081 -4.0045 29 6 3.0992 -6.0970 -4.8409 30 6 4.3059 -5.6848 -4.3068 31 6 4.4564 -5.5830 -2.9365 32 1 -0.3634 0.0033 1.0277 33 1 -0.3633 0.8884 -0.5167 34 1 -0.3633 -0.8916 -0.5111 35 1 3.7995 -3.2469 0.0005 36 1 2.9341 -4.7933 2.1264 37 1 1.3048 -5.4288 1.7722 38 1 1.9111 -5.5916 4.8243 39 1 2.4883 -7.6716 -0.4258 40 1 4.1970 -7.7473 0.0995 41 1 1.3713 -6.5558 -1.9805 42 1 1.1010 -6.7306 -4.4217 43 1 2.9816 -6.1763 -5.9115 44 1 5.1308 -5.4422 -4.9603 45 1 5.3990 -5.2609 -2.5193 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086602852.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:57 Heat of formation + Delta-G solvation = 111.267465 kcal Electronic energy + Delta-G solvation = -29686.849423 eV Core-core repulsion = 25707.054749 eV Total energy + Delta-G solvation = -3979.794674 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.45047 -40.02031 -39.02958 -37.24998 -34.58868 -33.74236 -32.88854 -32.31328 -31.07445 -30.82531 -28.73617 -27.71088 -27.10069 -24.87401 -24.12340 -22.85050 -22.48042 -21.80809 -20.84934 -20.10317 -20.00702 -18.86342 -17.20238 -16.83310 -16.53456 -16.52215 -15.97184 -15.28339 -14.85117 -14.77301 -14.46979 -14.16492 -13.84120 -13.81412 -13.32948 -13.14354 -13.07365 -12.87961 -12.73179 -12.55078 -12.26511 -12.21578 -11.95365 -11.43388 -11.26611 -11.23812 -11.17245 -11.02653 -10.86300 -10.65553 -10.53538 -10.26864 -10.07907 -9.97845 -9.86870 -9.37750 -8.95564 -8.87390 -8.70988 -8.46971 -6.97278 -5.82445 -3.16845 0.82559 1.40097 1.44665 2.18453 2.32155 3.01582 3.14509 3.34158 3.39868 3.42267 3.81661 4.17912 4.39624 4.53329 4.74062 4.80291 4.87853 4.94862 5.01361 5.11568 5.17290 5.34057 5.47526 5.51348 5.55829 5.60429 5.63093 5.66473 5.68071 5.83935 5.99126 6.00927 6.06727 6.15976 6.24033 6.40994 6.43776 6.46691 6.49311 6.55961 6.60348 6.81118 7.05207 7.27908 7.44366 7.52764 7.70386 8.08678 8.13005 8.17225 9.08384 9.69307 10.32863 11.28939 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.006951 B = 0.004665 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4027.173435 B = 6001.066199 C = 9038.932978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.058 3.942 3 N -0.271 5.271 4 N -0.051 5.051 5 N -0.375 5.375 6 H 0.450 0.550 7 C -0.062 4.062 8 C 0.595 3.405 9 O -0.507 6.507 10 N -0.705 5.705 11 C 0.127 3.873 12 H 0.098 0.902 13 C 0.170 3.830 14 N -0.603 5.603 15 C -0.234 4.234 16 H 0.081 0.919 17 C -0.003 4.003 18 N -0.917 5.917 19 Si 0.911 3.089 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.147 3.853 24 C -0.075 4.075 25 H 0.086 0.914 26 C -0.060 4.060 27 C -0.110 4.110 28 C -0.117 4.117 29 C -0.131 4.131 30 C -0.122 4.122 31 C -0.120 4.120 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.391 0.609 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.254 0.746 39 H 0.027 0.973 40 H 0.047 0.953 41 H 0.125 0.875 42 H 0.119 0.881 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.345 5.944 -14.812 16.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.082 4.082 3 N -0.139 5.139 4 N -0.032 5.032 5 N -0.102 5.102 6 H 0.296 0.704 7 C -0.196 4.196 8 C 0.378 3.622 9 O -0.380 6.380 10 N -0.355 5.355 11 C 0.023 3.977 12 H 0.116 0.884 13 C 0.044 3.956 14 N -0.330 5.330 15 C -0.362 4.362 16 H 0.099 0.901 17 C -0.200 4.200 18 N -0.564 5.564 19 Si 0.741 3.259 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.205 1.205 23 C 0.021 3.979 24 C -0.095 4.095 25 H 0.104 0.896 26 C -0.061 4.061 27 C -0.128 4.128 28 C -0.135 4.135 29 C -0.149 4.149 30 C -0.140 4.140 31 C -0.138 4.138 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.224 0.776 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.045 0.955 40 H 0.065 0.935 41 H 0.143 0.857 42 H 0.137 0.863 43 H 0.134 0.866 44 H 0.135 0.865 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.081 7.075 -14.553 16.472 hybrid contribution 0.861 -1.677 0.901 2.089 sum 3.942 5.398 -13.652 15.201 Atomic orbital electron populations 1.20324 0.84802 1.04272 1.03998 1.22320 0.98650 0.86916 1.00322 1.74921 0.95195 1.26061 1.17677 1.78150 1.16079 0.92302 1.16677 1.45438 1.08885 1.06978 1.48933 0.70352 1.22249 0.84829 0.96828 1.15707 1.16648 0.86240 0.81924 0.77407 1.90845 1.16363 1.81608 1.49174 1.45784 1.08446 1.06833 1.74437 1.22648 0.97391 0.77225 1.00429 0.88387 1.21580 0.99696 0.85856 0.88429 1.44447 1.72854 1.13013 1.02649 1.19047 1.39591 0.93445 0.84080 0.90133 1.24833 1.00720 0.96929 0.97537 1.69951 1.46587 1.17587 1.22253 0.86121 0.77547 0.79344 0.82894 1.21596 1.21677 1.20523 1.21597 0.97815 0.92127 0.86386 1.21689 0.99123 0.98856 0.89799 0.89557 1.19788 0.93702 0.97725 0.94839 1.21112 0.97516 0.99047 0.95104 1.21131 0.98774 1.00042 0.93580 1.21083 0.93645 1.00736 0.99451 1.21066 0.97477 1.00388 0.95074 1.21020 0.98378 1.01055 0.93340 0.89802 0.90475 0.88660 0.77632 0.92789 0.93011 0.93580 0.95537 0.93506 0.85703 0.86259 0.86561 0.86506 0.86391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 9.93 36.00 0.36 -0.54 16 2 C 0.06 0.80 7.30 -82.39 -0.60 0.20 16 3 N -0.27 -3.96 12.35 33.51 0.41 -3.55 16 4 N -0.05 -0.67 13.35 60.35 0.81 0.14 16 5 N -0.38 -4.11 6.97 33.31 0.23 -3.88 16 6 H 0.45 3.15 8.32 -190.34 -1.58 1.56 16 7 C -0.06 -0.83 7.17 -82.33 -0.59 -1.42 16 8 C 0.59 9.08 7.81 -12.60 -0.10 8.98 16 9 O -0.51 -9.29 14.64 5.26 0.08 -9.21 16 10 N -0.71 -9.86 5.10 -53.17 -0.27 -10.13 16 11 C 0.13 2.15 2.72 -66.10 -0.18 1.97 16 12 H 0.10 1.76 6.20 -51.93 -0.32 1.44 16 13 C 0.17 3.83 5.15 -2.92 -0.02 3.82 16 14 N -0.60 -14.24 3.40 -169.86 -0.58 -14.82 16 15 C -0.23 -6.18 10.27 -15.06 -0.15 -6.34 16 16 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 17 C 0.00 -0.09 5.48 -17.43 -0.10 -0.18 16 18 N -0.92 -26.12 10.38 55.49 0.58 -25.54 16 19 Si 0.91 21.42 29.56 -169.99 -5.02 16.40 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 C 0.15 2.75 6.65 -2.53 -0.02 2.73 16 24 C -0.07 -1.12 2.89 -89.62 -0.26 -1.38 16 25 H 0.09 1.20 7.83 -51.93 -0.41 0.79 16 26 C -0.06 -0.80 5.00 -104.63 -0.52 -1.32 16 27 C -0.11 -1.47 8.28 -39.59 -0.33 -1.80 16 28 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 29 C -0.13 -1.40 10.05 -39.58 -0.40 -1.80 16 30 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 31 C -0.12 -1.38 9.69 -39.58 -0.38 -1.77 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 1.20 6.62 -51.93 -0.34 0.85 16 35 H 0.39 4.18 7.83 -40.82 -0.32 3.86 16 36 H 0.05 1.35 7.19 -51.93 -0.37 0.97 16 37 H 0.05 1.37 7.62 -51.93 -0.40 0.98 16 38 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.03 0.50 7.05 -51.93 -0.37 0.13 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.13 1.74 7.01 -52.48 -0.37 1.38 16 42 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 43 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 44 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 45 H 0.12 1.15 7.99 -52.49 -0.42 0.73 16 LS Contribution 373.92 15.07 5.63 5.63 Total: -1.00 -32.74 373.92 -9.19 -41.94 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -6.98 Total: 5.31 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -4.08 Total: -2.29 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: 1.18 Total: -57.78 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.08 Total: -9.21 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.74 -9.19 -41.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086602852.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.203 kcal (2) G-P(sol) polarization free energy of solvation -32.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds