Wall clock time and date at job start Sat Apr 11 2020 06:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.54453 * 112.29602 * 2 1 4 4 N 1.48335 * 104.43619 * 97.05053 * 3 2 1 5 5 C 1.36937 * 128.19754 * 221.75785 * 4 3 2 6 6 H 1.07998 * 120.00147 * 170.85343 * 5 4 3 7 7 C 1.38810 * 120.00146 * 350.85938 * 5 4 3 8 8 N 1.31620 * 119.99874 * 348.35745 * 7 5 4 9 9 Si 1.86802 * 120.00197 * 168.35740 * 7 5 4 10 10 H 1.48498 * 109.46956 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46981 * 119.99887 * 9 7 5 12 12 H 1.48499 * 109.47530 * 239.99983 * 9 7 5 13 13 C 1.48330 * 103.60262 * 41.74246 * 4 3 2 14 14 C 1.54452 * 104.32583 * 318.19228 * 13 4 3 15 15 H 1.09001 * 112.29810 * 262.45202 * 14 13 4 16 16 C 1.53732 * 109.01436 * 137.35924 * 14 13 4 17 17 N 1.47198 * 106.43191 * 229.45580 * 16 14 13 18 18 C 1.34777 * 126.70641 * 211.34889 * 17 16 14 19 19 O 1.21572 * 120.00089 * 184.13528 * 18 17 16 20 20 C 1.47692 * 119.99705 * 4.13901 * 18 17 16 21 21 C 1.39978 * 120.38425 * 335.96141 * 20 18 17 22 22 N 1.31386 * 121.15882 * 180.02562 * 21 20 18 23 23 C 1.32543 * 121.79405 * 359.97438 * 22 21 20 24 24 N 1.37584 * 133.56767 * 179.97438 * 23 22 21 25 25 H 0.96994 * 126.23696 * 359.97438 * 24 23 22 26 26 C 1.36170 * 107.52135 * 180.02562 * 24 23 22 27 27 N 1.30055 * 110.11778 * 359.97438 * 26 24 23 28 28 C 1.35773 * 109.43206 * 0.02562 * 27 26 24 29 29 C 1.39491 * 133.74703 * 180.26880 * 28 27 26 30 30 C 1.47192 * 106.58939 * 31.37361 * 17 16 14 31 31 H 1.09004 * 109.46975 * 61.01538 * 1 2 3 32 32 H 1.09000 * 109.46929 * 181.01489 * 1 2 3 33 33 H 1.08996 * 109.47163 * 301.01732 * 1 2 3 34 34 H 1.09000 * 110.46435 * 338.27435 * 3 2 1 35 35 H 1.09003 * 110.46183 * 215.82236 * 3 2 1 36 36 H 0.97006 * 120.00009 * 180.02562 * 8 7 5 37 37 H 1.09002 * 110.46504 * 76.90508 * 13 4 3 38 38 H 1.09005 * 110.45950 * 199.35612 * 13 4 3 39 39 H 1.08996 * 110.06839 * 348.70002 * 16 14 13 40 40 H 1.09000 * 110.06446 * 110.16267 * 16 14 13 41 41 H 1.07994 * 119.42464 * 0.02562 * 21 20 18 42 42 H 1.08004 * 124.94314 * 179.97438 * 26 24 23 43 43 H 1.08005 * 120.97018 * 359.97386 * 29 28 27 44 44 H 1.08997 * 110.06792 * 87.86997 * 30 17 16 45 45 H 1.09006 * 110.06420 * 209.33564 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1160 1.4291 0.0000 4 7 2.4194 1.7043 1.4257 5 6 2.2068 2.8599 2.1289 6 1 2.3407 2.8724 3.2004 7 6 1.8189 4.0153 1.4644 8 7 1.8760 4.0696 0.1506 9 14 1.2160 5.4932 2.4349 10 1 1.2476 5.1789 3.8859 11 1 2.0966 6.6575 2.1618 12 1 -0.1748 5.8185 2.0285 13 6 3.0074 0.4313 1.9093 14 6 2.1224 -0.6639 1.2746 15 1 1.3565 -1.0258 1.9605 16 6 3.0225 -1.7968 0.7554 17 7 2.5969 -2.0662 -0.6277 18 6 2.6363 -3.2526 -1.2661 19 8 2.3225 -3.3227 -2.4385 20 6 3.0608 -4.4674 -0.5413 21 6 3.8765 -4.3671 0.5918 22 7 4.2635 -5.4377 1.2478 23 6 3.9022 -6.6560 0.8712 24 7 4.1579 -7.9154 1.3627 25 1 4.6975 -8.1288 2.1400 26 6 3.5164 -8.8074 0.5584 27 7 2.8856 -8.1809 -0.3907 28 6 3.0818 -6.8440 -0.2575 29 6 2.6477 -5.7292 -0.9749 30 6 2.1202 -0.7868 -1.1775 31 1 -0.3633 0.4980 -0.8990 32 1 -0.3633 -1.0275 0.0182 33 1 -0.3633 0.5295 0.8807 34 1 1.3828 2.1416 -0.3780 35 1 3.0267 1.4675 -0.5977 36 1 1.6054 4.8771 -0.3138 37 1 4.0380 0.3336 1.5680 38 1 2.9605 0.3789 2.9970 39 1 4.0660 -1.4823 0.7709 40 1 2.8920 -2.6888 1.3681 41 1 4.1934 -3.3926 0.9328 42 1 3.5296 -9.8794 0.6896 43 1 2.0139 -5.8389 -1.8425 44 1 2.9518 -0.2350 -1.6158 45 1 1.3526 -0.9661 -1.9304 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091706947.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:06 Heat of formation + Delta-G solvation = 85.500500 kcal Electronic energy + Delta-G solvation = -29582.866541 eV Core-core repulsion = 25601.954527 eV Total energy + Delta-G solvation = -3980.912013 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.45043 -41.78544 -40.06371 -38.88355 -36.65378 -34.78905 -34.34043 -33.11759 -32.38439 -31.17460 -31.02483 -28.09413 -27.58265 -26.78004 -25.21057 -25.02804 -23.68897 -22.75682 -22.16407 -20.87763 -19.94950 -19.73859 -19.16404 -18.66634 -17.56016 -17.27731 -16.93292 -16.72551 -16.56870 -16.27227 -15.89385 -15.57322 -15.29660 -14.97855 -14.79166 -14.75345 -14.38764 -14.03645 -13.80275 -13.72081 -13.58149 -13.27021 -13.12722 -12.86952 -12.73211 -12.51261 -12.34264 -12.30807 -12.13331 -11.87613 -11.68815 -11.50177 -11.44828 -11.23498 -11.16330 -10.69550 -10.39422 -10.11204 -9.73926 -9.71854 -8.85980 -7.82247 -5.16004 -0.45483 -0.28928 1.48719 1.50103 1.50851 1.60180 1.60883 1.74139 1.83395 2.52948 2.63629 2.98897 3.29008 3.35578 3.36315 3.47447 3.60101 3.64894 3.67516 3.94587 3.98713 4.15459 4.18843 4.23987 4.29417 4.38358 4.53137 4.65197 4.67238 4.71830 4.77974 4.87965 4.89593 4.91530 4.97823 5.04292 5.22577 5.25447 5.30317 5.31338 5.47804 5.53253 5.58512 5.81539 6.12226 6.27838 6.42324 6.58462 6.69015 6.95546 7.08024 7.76972 8.53940 9.28834 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026515 B = 0.002479 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.765969 B =11292.039063 C =11935.800032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.085 4.085 3 C 0.165 3.835 4 N -0.619 5.619 5 C -0.224 4.224 6 H 0.084 0.916 7 C -0.065 4.065 8 N -0.946 5.946 9 Si 0.970 3.030 10 H -0.265 1.265 11 H -0.297 1.297 12 H -0.295 1.295 13 C 0.129 3.871 14 C -0.097 4.097 15 H 0.100 0.900 16 C 0.093 3.907 17 N -0.602 5.602 18 C 0.585 3.415 19 O -0.576 6.576 20 C -0.196 4.196 21 C 0.157 3.843 22 N -0.486 5.486 23 C 0.243 3.757 24 N -0.574 5.574 25 H 0.449 0.551 26 C 0.308 3.692 27 N -0.527 5.527 28 C -0.022 4.022 29 C 0.031 3.969 30 C 0.126 3.874 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.067 0.933 35 H 0.002 0.998 36 H 0.246 0.754 37 H 0.037 0.963 38 H 0.061 0.939 39 H 0.096 0.904 40 H 0.111 0.889 41 H 0.204 0.796 42 H 0.284 0.716 43 H 0.145 0.855 44 H 0.066 0.934 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.482 -26.620 5.150 27.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.088 4.088 3 C 0.039 3.961 4 N -0.342 5.342 5 C -0.353 4.353 6 H 0.102 0.898 7 C -0.259 4.259 8 N -0.595 5.595 9 Si 0.800 3.200 10 H -0.189 1.189 11 H -0.224 1.224 12 H -0.222 1.222 13 C 0.003 3.997 14 C -0.118 4.118 15 H 0.118 0.882 16 C -0.029 4.029 17 N -0.333 5.333 18 C 0.375 3.625 19 O -0.457 6.457 20 C -0.204 4.204 21 C -0.011 4.011 22 N -0.199 5.199 23 C 0.005 3.995 24 N -0.190 5.190 25 H 0.292 0.708 26 C 0.020 3.980 27 N -0.247 5.247 28 C -0.142 4.142 29 C 0.003 3.997 30 C 0.003 3.997 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.020 0.980 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.080 0.920 39 H 0.114 0.886 40 H 0.129 0.871 41 H 0.220 0.780 42 H 0.299 0.701 43 H 0.163 0.837 44 H 0.084 0.916 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.305 -26.830 4.586 27.557 hybrid contribution -0.137 1.613 0.149 1.626 sum 4.167 -25.217 4.735 25.994 Atomic orbital electron populations 1.21466 0.92937 1.00980 1.01350 1.22311 0.96221 0.96297 0.93968 1.21738 0.96682 0.92112 0.85610 1.45365 1.70886 1.09864 1.08099 1.19394 1.38159 0.86690 0.91065 0.89826 1.25526 1.03591 1.00157 0.96578 1.70048 1.54211 1.27893 1.07396 0.85125 0.77088 0.79327 0.78486 1.18931 1.22446 1.22244 1.22074 0.94552 0.85014 0.98061 1.23054 0.97922 0.94463 0.96367 0.88150 1.22901 0.99354 0.99269 0.81388 1.48439 1.62246 1.07448 1.15161 1.17709 0.77299 0.81968 0.85488 1.90773 1.51801 1.85999 1.17156 1.20377 1.06406 0.92958 1.00631 1.23804 0.91250 0.97375 0.88627 1.66588 1.24730 0.96141 1.32403 1.19481 0.97742 0.88030 0.94226 1.42978 1.44751 1.02474 1.28783 0.70773 1.26720 0.87854 0.99061 0.84334 1.70518 1.25766 1.02667 1.25745 1.19671 1.03172 0.93112 0.98208 1.20810 0.93994 0.88375 0.96528 1.21970 0.98813 0.82793 0.96132 0.93238 0.91889 0.93439 0.91473 0.98010 0.94435 0.94479 0.92008 0.88589 0.87133 0.78004 0.70110 0.83736 0.91587 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.68 8.61 71.98 0.62 -3.06 16 2 C -0.09 -2.96 1.08 -50.71 -0.05 -3.01 16 3 C 0.16 7.52 5.26 86.52 0.46 7.97 16 4 N -0.62 -29.35 3.38 -686.92 -2.32 -31.68 16 5 C -0.22 -11.86 10.39 84.03 0.87 -10.98 16 6 H 0.08 4.22 7.86 -2.91 -0.02 4.20 16 7 C -0.07 -3.59 5.41 84.86 0.46 -3.13 16 8 N -0.95 -55.27 10.64 21.65 0.23 -55.04 16 9 Si 0.97 44.54 29.57 68.60 2.03 46.57 16 10 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 12 H -0.30 -13.68 7.11 99.48 0.71 -12.98 16 13 C 0.13 4.53 6.76 86.52 0.58 5.11 16 14 C -0.10 -2.84 3.73 -9.21 -0.03 -2.87 16 15 H 0.10 2.71 7.95 -2.39 -0.02 2.69 16 16 C 0.09 2.12 4.71 86.49 0.41 2.53 16 17 N -0.60 -16.96 3.32 -819.61 -2.72 -19.68 16 18 C 0.59 17.63 7.70 86.74 0.67 18.30 16 19 O -0.58 -21.54 16.91 -3.94 -0.07 -21.60 16 20 C -0.20 -4.91 5.78 -20.01 -0.12 -5.02 16 21 C 0.16 3.30 9.14 85.18 0.78 4.08 16 22 N -0.49 -10.17 10.36 -191.77 -1.99 -12.16 16 23 C 0.24 4.72 8.45 133.91 1.13 5.86 16 24 N -0.57 -5.41 6.20 -195.73 -1.21 -6.62 16 25 H 0.45 0.95 8.96 -92.71 -0.83 0.12 16 26 C 0.31 2.46 12.97 180.03 2.33 4.79 16 27 N -0.53 -10.06 11.29 -191.93 -2.17 -12.23 16 28 C -0.02 -0.51 7.23 39.46 0.29 -0.23 16 29 C 0.03 0.78 9.75 22.92 0.22 1.00 16 30 C 0.13 4.08 6.19 86.39 0.54 4.62 16 31 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.07 3.58 5.83 -2.39 -0.01 3.57 16 35 H 0.00 0.10 7.17 -2.39 -0.02 0.08 16 36 H 0.25 14.09 8.31 -92.70 -0.77 13.32 16 37 H 0.04 1.26 7.17 -2.39 -0.02 1.24 16 38 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 39 H 0.10 1.96 6.75 -2.39 -0.02 1.94 16 40 H 0.11 1.97 5.35 -2.39 -0.01 1.96 16 41 H 0.20 3.41 4.43 -2.91 -0.01 3.39 16 42 H 0.28 -1.41 8.06 -2.91 -0.02 -1.44 16 43 H 0.14 3.77 7.90 -2.91 -0.02 3.75 16 44 H 0.07 2.26 7.11 -2.39 -0.02 2.25 16 45 H 0.07 2.42 7.67 -2.38 -0.02 2.40 16 Total: -1.00 -77.74 359.24 1.16 -76.58 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 0.23 Total: 9.91 kcal Atomic # 6 Polarization: 16.80 SS G_CDS: 9.15 Total: 25.95 kcal Atomic # 7 Polarization: -127.23 SS G_CDS: -10.18 Total: -137.41 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.07 Total: -21.60 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -77.74 1.16 -76.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091706947.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.080 kcal (2) G-P(sol) polarization free energy of solvation -77.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds