Wall clock time and date at job start Sat Apr 11 2020 06:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.54453 * 112.30177 * 2 1 4 4 N 1.48327 * 104.43572 * 97.05392 * 3 2 1 5 5 C 1.36934 * 128.19806 * 221.75938 * 4 3 2 6 6 H 1.08002 * 120.00069 * 171.05369 * 5 4 3 7 7 C 1.38812 * 119.99926 * 351.05759 * 5 4 3 8 8 N 1.31612 * 119.99921 * 348.31589 * 7 5 4 9 9 Si 1.86800 * 119.99886 * 168.32293 * 7 5 4 10 10 H 1.48510 * 109.47094 * 89.99696 * 9 7 5 11 11 H 1.48500 * 109.47293 * 209.99428 * 9 7 5 12 12 H 1.48496 * 109.47462 * 329.99588 * 9 7 5 13 13 C 1.48336 * 103.60312 * 41.74106 * 4 3 2 14 14 C 1.54443 * 104.32491 * 318.19392 * 13 4 3 15 15 H 1.09004 * 112.29749 * 262.44411 * 14 13 4 16 16 C 1.53748 * 109.01369 * 137.36108 * 14 13 4 17 17 N 1.47195 * 106.42616 * 229.45281 * 16 14 13 18 18 C 1.34777 * 126.70147 * 211.34414 * 17 16 14 19 19 O 1.21589 * 120.00069 * 184.10416 * 18 17 16 20 20 C 1.47578 * 120.00029 * 4.10752 * 18 17 16 21 21 C 1.41516 * 120.56692 * 336.27951 * 20 18 17 22 22 N 1.30908 * 120.16472 * 179.71760 * 21 20 18 23 23 C 1.34260 * 121.27393 * 0.55446 * 22 21 20 24 24 N 1.32429 * 131.63530 * 179.75196 * 23 22 21 25 25 C 1.33691 * 109.32383 * 179.97438 * 24 23 22 26 26 C 1.34913 * 108.65766 * 0.02562 * 25 24 23 27 27 N 1.37009 * 107.05617 * 359.97438 * 26 25 24 28 28 C 1.35963 * 132.54857 * 180.02562 * 27 26 25 29 29 C 1.47197 * 106.59338 * 31.37367 * 17 16 14 30 30 H 1.09004 * 109.47001 * 61.01198 * 1 2 3 31 31 H 1.09000 * 109.47735 * 181.01393 * 1 2 3 32 32 H 1.09005 * 109.46881 * 301.01616 * 1 2 3 33 33 H 1.08990 * 110.46154 * 338.27549 * 3 2 1 34 34 H 1.09001 * 110.45950 * 215.82883 * 3 2 1 35 35 H 0.97005 * 119.99791 * 180.02562 * 8 7 5 36 36 H 1.09001 * 110.46136 * 76.90871 * 13 4 3 37 37 H 1.09004 * 110.46155 * 199.35378 * 13 4 3 38 38 H 1.08997 * 110.06373 * 348.69491 * 16 14 13 39 39 H 1.08997 * 110.06609 * 110.16076 * 16 14 13 40 40 H 1.07996 * 119.91981 * 359.97438 * 21 20 18 41 41 H 1.07996 * 125.67384 * 180.02562 * 25 24 23 42 42 H 1.07998 * 126.47056 * 180.02562 * 26 25 24 43 43 H 1.07997 * 120.58338 * 359.93634 * 28 27 26 44 44 H 1.08994 * 110.06401 * 87.86983 * 29 17 16 45 45 H 1.08999 * 110.06081 * 209.33092 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1161 1.4290 0.0000 4 7 2.4196 1.7042 1.4256 5 6 2.2071 2.8597 2.1288 6 1 2.3442 2.8730 3.2000 7 6 1.8153 4.0141 1.4649 8 7 1.8692 4.0681 0.1510 9 14 1.2119 5.4911 2.4364 10 1 2.3626 6.3696 2.7675 11 1 0.2278 6.2499 1.6234 12 1 0.5656 5.0282 3.6907 13 6 3.0075 0.4310 1.9092 14 6 2.1224 -0.6640 1.2745 15 1 1.3565 -1.0259 1.9605 16 6 3.0225 -1.7971 0.7552 17 7 2.5966 -2.0664 -0.6278 18 6 2.6360 -3.2527 -1.2662 19 8 2.3215 -3.3229 -2.4386 20 6 3.0608 -4.4665 -0.5423 21 6 3.8806 -4.3691 0.6071 22 7 4.2482 -5.4506 1.2465 23 6 3.8714 -6.6695 0.8283 24 7 4.1219 -7.8795 1.3047 25 6 3.5193 -8.7915 0.5350 26 6 2.8669 -8.1541 -0.4591 27 7 3.0815 -6.8122 -0.2848 28 6 2.6703 -5.7176 -0.9788 29 6 2.1201 -0.7868 -1.1776 30 1 -0.3633 0.4981 -0.8990 31 1 -0.3634 -1.0275 0.0182 32 1 -0.3633 0.5296 0.8808 33 1 1.3830 2.1415 -0.3780 34 1 3.0267 1.4673 -0.5978 35 1 1.5957 4.8749 -0.3129 36 1 4.0381 0.3333 1.5679 37 1 2.9606 0.3786 2.9969 38 1 4.0660 -1.4826 0.7707 39 1 2.8919 -2.6891 1.3679 40 1 4.2004 -3.3998 0.9601 41 1 3.5496 -9.8607 0.6842 42 1 2.2848 -8.6146 -1.2436 43 1 2.0493 -5.8244 -1.8559 44 1 2.9517 -0.2353 -1.6159 45 1 1.3524 -0.9661 -1.9304 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091853327.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:45 Heat of formation + Delta-G solvation = 132.872447 kcal Electronic energy + Delta-G solvation = -29673.452244 eV Core-core repulsion = 25694.594432 eV Total energy + Delta-G solvation = -3978.857812 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.41406 -40.71088 -38.94335 -37.93516 -35.37158 -34.89081 -32.84087 -31.80462 -31.16002 -29.78647 -29.59031 -26.95973 -26.04520 -25.64633 -24.68880 -24.19224 -22.52072 -22.25448 -20.69809 -20.05626 -19.02669 -18.71076 -17.97234 -17.00590 -16.79834 -16.44607 -16.28400 -15.76841 -15.32528 -14.79640 -14.62410 -14.50787 -14.38301 -14.12124 -13.76275 -13.70886 -13.29123 -12.87461 -12.73999 -12.55250 -12.30827 -12.21964 -11.80161 -11.65523 -11.44998 -11.09216 -10.97647 -10.83955 -10.79183 -10.46733 -10.22478 -10.09462 -10.08340 -9.98193 -9.87112 -9.64340 -9.55353 -8.81417 -8.72699 -8.56852 -6.99788 -5.84338 -3.17936 -0.07318 0.41913 1.80074 2.13034 2.68682 2.79971 3.16776 3.24643 3.33987 3.40595 3.41764 3.83075 3.93511 4.13073 4.33506 4.39742 4.64858 4.67420 4.81541 4.92007 5.00197 5.03891 5.16711 5.30775 5.39721 5.47447 5.50897 5.60385 5.63068 5.81988 5.92382 5.96692 5.99653 6.06131 6.07539 6.09569 6.20861 6.38554 6.53777 6.62898 6.67079 6.82382 7.07365 7.18304 7.38549 7.45520 7.51397 7.66270 7.86993 8.14215 9.03323 9.67177 10.41312 11.27484 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027019 B = 0.002493 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.052665 B =11228.395930 C =11855.083916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.094 4.094 3 C 0.158 3.842 4 N -0.593 5.593 5 C -0.223 4.223 6 H 0.079 0.921 7 C -0.007 4.007 8 N -0.916 5.916 9 Si 0.910 3.090 10 H -0.288 1.288 11 H -0.290 1.290 12 H -0.281 1.281 13 C 0.131 3.869 14 C -0.108 4.108 15 H 0.088 0.912 16 C 0.085 3.915 17 N -0.601 5.601 18 C 0.590 3.410 19 O -0.538 6.538 20 C -0.214 4.214 21 C 0.182 3.818 22 N -0.434 5.434 23 C 0.384 3.616 24 N -0.471 5.471 25 C 0.051 3.949 26 C -0.095 4.095 27 N -0.401 5.401 28 C 0.182 3.818 29 C 0.120 3.880 30 H 0.054 0.946 31 H 0.040 0.960 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.022 0.978 35 H 0.254 0.746 36 H 0.029 0.971 37 H 0.051 0.949 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.202 0.798 41 H 0.191 0.809 42 H 0.191 0.809 43 H 0.189 0.811 44 H 0.077 0.923 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.185 -20.510 -2.935 20.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.097 4.097 3 C 0.032 3.968 4 N -0.316 5.316 5 C -0.351 4.351 6 H 0.096 0.904 7 C -0.203 4.203 8 N -0.562 5.562 9 Si 0.740 3.260 10 H -0.215 1.215 11 H -0.216 1.216 12 H -0.206 1.206 13 C 0.004 3.996 14 C -0.129 4.129 15 H 0.106 0.894 16 C -0.038 4.038 17 N -0.332 5.332 18 C 0.376 3.624 19 O -0.416 6.416 20 C -0.223 4.223 21 C -0.006 4.006 22 N -0.145 5.145 23 C 0.036 3.964 24 N -0.193 5.193 25 C -0.100 4.100 26 C -0.225 4.225 27 N -0.079 5.079 28 C 0.046 3.954 29 C -0.002 4.002 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.123 0.877 34 H 0.040 0.960 35 H 0.065 0.935 36 H 0.046 0.954 37 H 0.070 0.930 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.218 0.782 41 H 0.208 0.792 42 H 0.208 0.792 43 H 0.206 0.794 44 H 0.095 0.905 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.596 -20.768 -2.129 20.886 hybrid contribution -1.229 0.811 -0.971 1.764 sum -0.633 -19.957 -3.100 20.206 Atomic orbital electron populations 1.21545 0.93400 0.99982 1.02486 1.22543 0.95976 0.99097 0.92038 1.21970 0.98414 0.90070 0.86361 1.45077 1.70062 1.08894 1.07521 1.18993 1.39795 0.85754 0.90576 0.90367 1.24778 1.02312 0.97491 0.95751 1.69823 1.52494 1.27867 1.06054 0.86153 0.78459 0.82473 0.78872 1.21541 1.21563 1.20643 1.21866 0.93906 0.86580 0.97288 1.23166 0.97820 0.94527 0.97417 0.89406 1.22874 0.99686 0.99288 0.81954 1.48464 1.61951 1.08085 1.14674 1.16965 0.78444 0.81256 0.85687 1.90823 1.50266 1.85429 1.15130 1.20644 1.06756 0.93779 1.01124 1.24349 0.89938 0.97852 0.88440 1.67928 1.22276 0.94739 1.29560 1.22267 0.94715 0.93834 0.85581 1.70749 1.25069 0.95392 1.28065 1.22703 0.95761 0.99969 0.91566 1.22780 1.12415 0.79847 1.07411 1.44038 1.34534 1.07171 1.22135 1.22513 0.94156 0.83654 0.95066 1.22267 0.99378 0.81714 0.96843 0.92677 0.94116 0.91707 0.87682 0.96023 0.93536 0.95364 0.93022 0.89816 0.90141 0.78184 0.79172 0.79224 0.79394 0.90462 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.83 8.61 37.16 0.32 -1.51 16 2 C -0.09 -1.52 1.08 -152.23 -0.16 -1.69 16 3 C 0.16 3.35 5.27 -2.27 -0.01 3.34 16 4 N -0.59 -13.58 3.38 -168.48 -0.57 -14.15 16 5 C -0.22 -5.76 10.39 -15.06 -0.16 -5.91 16 6 H 0.08 1.96 7.86 -52.49 -0.41 1.55 16 7 C -0.01 -0.18 5.41 -17.43 -0.09 -0.27 16 8 N -0.92 -25.22 10.63 55.49 0.59 -24.63 16 9 Si 0.91 20.97 29.57 -169.99 -5.03 15.94 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 C 0.13 2.31 6.76 -2.27 -0.02 2.29 16 14 C -0.11 -1.57 3.73 -88.18 -0.33 -1.90 16 15 H 0.09 1.24 7.95 -51.93 -0.41 0.82 16 16 C 0.08 0.97 4.72 -3.27 -0.02 0.95 16 17 N -0.60 -7.74 3.32 -173.06 -0.57 -8.32 16 18 C 0.59 7.62 7.71 -12.45 -0.10 7.53 16 19 O -0.54 -8.41 16.87 5.29 0.09 -8.32 16 20 C -0.21 -2.32 5.77 -104.88 -0.61 -2.92 16 21 C 0.18 1.95 9.22 -16.70 -0.15 1.79 16 22 N -0.43 -5.67 10.45 -13.37 -0.14 -5.81 16 23 C 0.38 5.07 8.91 -322.24 -2.87 2.20 16 24 N -0.47 -6.23 11.31 -14.42 -0.16 -6.39 16 25 C 0.05 0.45 11.82 -17.92 -0.21 0.24 16 26 C -0.09 -0.73 11.76 -16.42 -0.19 -0.93 16 27 N -0.40 -4.17 2.94 -63.77 -0.19 -4.35 16 28 C 0.18 1.73 10.65 -15.76 -0.17 1.57 16 29 C 0.12 1.75 6.19 -3.44 -0.02 1.73 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.11 2.57 5.81 -51.93 -0.30 2.27 16 34 H 0.02 0.48 7.17 -51.93 -0.37 0.11 16 35 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 36 H 0.03 0.49 7.17 -51.93 -0.37 0.11 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 0.88 6.76 -51.93 -0.35 0.53 16 39 H 0.08 0.76 5.32 -51.93 -0.28 0.49 16 40 H 0.20 1.75 4.49 -52.49 -0.24 1.51 16 41 H 0.19 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.19 0.70 8.06 -52.49 -0.42 0.28 16 43 H 0.19 1.35 7.85 -52.49 -0.41 0.94 16 44 H 0.08 1.18 7.11 -51.93 -0.37 0.81 16 45 H 0.08 1.16 7.67 -51.93 -0.40 0.76 16 LS Contribution 359.97 15.07 5.42 5.42 Total: -1.00 -32.81 359.97 -10.93 -43.75 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -5.59 Total: 0.34 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: -4.79 Total: 6.50 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: -1.04 Total: -63.64 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.09 Total: -8.32 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.81 -10.93 -43.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091853327.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.618 kcal (2) G-P(sol) polarization free energy of solvation -32.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds