Wall clock time and date at job start Sat Apr 11 2020 06:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.54028 * 112.12700 * 2 1 4 4 N 1.48334 * 104.52971 * 97.20230 * 3 2 1 5 5 C 1.36939 * 128.19691 * 221.77007 * 4 3 2 6 6 H 1.07995 * 120.00055 * 20.18560 * 5 4 3 7 7 C 1.38813 * 119.99742 * 200.18271 * 5 4 3 8 8 N 1.31617 * 120.00402 * 20.95835 * 7 5 4 9 9 Si 1.86800 * 119.99712 * 200.95828 * 7 5 4 10 10 H 1.48506 * 109.47237 * 180.02562 * 9 7 5 11 11 H 1.48500 * 109.47472 * 60.00196 * 9 7 5 12 12 H 1.48503 * 109.46996 * 299.99742 * 9 7 5 13 13 C 1.48335 * 103.60413 * 41.51455 * 4 3 2 14 14 C 1.54453 * 104.31947 * 318.45125 * 13 4 3 15 15 H 1.09008 * 112.30155 * 263.01193 * 14 13 4 16 16 C 1.53748 * 109.01293 * 137.92702 * 14 13 4 17 17 N 1.48247 * 105.90290 * 229.74436 * 16 14 13 18 18 C 1.34778 * 126.41227 * 211.09282 * 17 16 14 19 19 O 1.21758 * 119.99627 * 173.97830 * 18 17 16 20 20 C 1.46194 * 120.00357 * 353.97331 * 18 17 16 21 21 C 1.38716 * 126.75943 * 352.99589 * 20 18 17 22 22 N 1.32279 * 108.17387 * 179.82444 * 21 20 18 23 23 C 1.33136 * 109.71514 * 0.44444 * 22 21 20 24 24 C 1.40624 * 132.28969 * 179.72275 * 23 22 21 25 25 C 1.36306 * 119.22750 * 179.97438 * 24 23 22 26 26 C 1.39875 * 120.11511 * 0.02562 * 25 24 23 27 27 N 1.30806 * 120.78032 * 359.95672 * 26 25 24 28 28 N 1.36643 * 108.62779 * 359.71608 * 23 22 21 29 29 C 1.47191 * 106.87826 * 30.83137 * 17 16 14 30 30 H 1.09000 * 109.47190 * 302.41897 * 1 2 3 31 31 H 1.09001 * 109.47143 * 62.41134 * 1 2 3 32 32 H 1.08997 * 109.47629 * 182.41643 * 1 2 3 33 33 H 1.08993 * 110.39396 * 338.40998 * 3 2 1 34 34 H 1.09000 * 110.33318 * 215.96446 * 3 2 1 35 35 H 0.97003 * 119.99350 * 5.89426 * 8 7 5 36 36 H 1.08993 * 110.46421 * 77.16018 * 13 4 3 37 37 H 1.09004 * 110.46103 * 199.74503 * 13 4 3 38 38 H 1.09003 * 110.06331 * 348.69559 * 16 14 13 39 39 H 1.09004 * 110.06310 * 110.20908 * 16 14 13 40 40 H 1.07998 * 125.91333 * 359.97438 * 21 20 18 41 41 H 1.08000 * 120.38824 * 0.02562 * 24 23 22 42 42 H 1.07999 * 119.94396 * 180.02562 * 25 24 23 43 43 H 1.08004 * 119.60986 * 180.02562 * 26 25 24 44 44 H 1.08999 * 110.06378 * 209.64778 * 29 17 16 45 45 H 1.08996 * 110.06685 * 88.13030 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1101 1.4268 0.0000 4 7 2.4171 1.7038 1.4246 5 6 2.2027 2.8590 2.1279 6 1 1.4856 3.5833 1.7710 7 6 2.9071 3.0990 3.2997 8 7 4.0388 2.4671 3.5285 9 14 2.2489 4.3189 4.5519 10 1 3.1800 4.3942 5.7064 11 1 0.9124 3.8736 5.0217 12 1 2.1315 5.6590 3.9231 13 6 3.0053 0.4310 1.9085 14 6 2.1221 -0.6645 1.2719 15 1 1.3492 -1.0205 1.9531 16 6 3.0230 -1.8032 0.7663 17 7 2.6006 -2.0657 -0.6303 18 6 2.6415 -3.2518 -1.2690 19 8 2.1629 -3.3600 -2.3833 20 6 3.2607 -4.4085 -0.6240 21 6 3.9629 -4.4147 0.5724 22 7 4.3576 -5.6541 0.8126 23 6 3.9551 -6.4528 -0.1736 24 6 4.1157 -7.8314 -0.4001 25 6 3.5815 -8.3879 -1.5238 26 6 2.8831 -7.5916 -2.4374 27 7 2.7319 -6.3092 -2.2289 28 7 3.2668 -5.7054 -1.0872 29 6 2.1238 -0.7863 -1.1802 30 1 -0.3633 0.5509 0.8675 31 1 -0.3633 0.4759 -0.9108 32 1 -0.3634 -1.0267 0.0433 33 1 1.3732 2.1365 -0.3759 34 1 3.0191 1.4661 -0.6002 35 1 4.4243 1.8993 2.8430 36 1 4.0364 0.3343 1.5689 37 1 2.9547 0.3770 2.9961 38 1 4.0674 -1.4920 0.7891 39 1 2.8835 -2.6918 1.3820 40 1 4.1521 -3.5566 1.2003 41 1 4.6555 -8.4422 0.3084 42 1 3.6976 -9.4455 -1.7091 43 1 2.4627 -8.0412 -3.3250 44 1 1.3568 -0.9658 -1.9336 45 1 2.9556 -0.2338 -1.6170 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092077640.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:54 Heat of formation + Delta-G solvation = 138.267951 kcal Electronic energy + Delta-G solvation = -29779.289903 eV Core-core repulsion = 25800.666058 eV Total energy + Delta-G solvation = -3978.623845 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.87510 -40.31965 -38.56702 -38.08895 -35.24516 -33.96936 -33.07574 -31.59274 -31.07805 -30.18985 -29.67423 -26.87225 -25.81133 -25.53533 -24.70020 -23.86774 -22.91459 -21.87839 -20.64526 -20.10782 -18.80926 -17.91133 -17.73518 -17.37622 -17.17831 -16.57640 -15.97187 -15.57753 -15.40000 -14.85931 -14.34522 -14.21342 -14.05613 -13.81834 -13.65010 -13.44130 -13.33525 -13.01047 -12.86155 -12.83277 -12.32458 -11.99001 -11.76670 -11.63093 -11.50054 -11.27921 -10.91591 -10.72735 -10.55790 -10.40922 -10.29990 -10.16454 -10.13948 -9.99739 -9.85026 -9.81196 -9.40842 -8.74896 -8.57246 -8.47139 -7.02891 -6.13450 -3.22406 -0.01642 0.51280 1.37011 1.99034 2.86838 2.90184 3.18973 3.47876 3.50719 3.62134 3.68799 3.76648 4.07633 4.38596 4.40575 4.53101 4.71238 4.74738 4.78701 4.87327 5.09602 5.17338 5.28158 5.30070 5.33973 5.38517 5.45443 5.49781 5.58180 5.79560 5.83059 5.88173 5.90523 6.02506 6.02880 6.14894 6.18880 6.30989 6.44106 6.53542 6.60261 6.74670 6.87344 6.94791 7.10544 7.26107 7.48829 7.67889 8.11670 8.40082 8.93778 9.74629 10.36904 11.22223 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022851 B = 0.002654 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.019505 B =10547.414649 C =11440.710516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.085 4.085 3 C 0.137 3.863 4 N -0.597 5.597 5 C -0.324 4.324 6 H 0.065 0.935 7 C -0.027 4.027 8 N -0.924 5.924 9 Si 1.070 2.930 10 H -0.285 1.285 11 H -0.293 1.293 12 H -0.293 1.293 13 C 0.141 3.859 14 C -0.110 4.110 15 H 0.088 0.912 16 C 0.090 3.910 17 N -0.603 5.603 18 C 0.606 3.394 19 O -0.532 6.532 20 C -0.050 4.050 21 C 0.069 3.931 22 N -0.461 5.461 23 C 0.177 3.823 24 C -0.008 4.008 25 C -0.172 4.172 26 C 0.123 3.877 27 N -0.234 5.234 28 N -0.238 5.238 29 C 0.124 3.876 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.052 0.948 34 H 0.027 0.973 35 H 0.268 0.732 36 H 0.029 0.971 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.210 0.790 41 H 0.166 0.834 42 H 0.160 0.840 43 H 0.202 0.798 44 H 0.079 0.921 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.411 -21.519 -9.099 23.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.087 4.087 3 C 0.010 3.990 4 N -0.321 5.321 5 C -0.452 4.452 6 H 0.083 0.917 7 C -0.228 4.228 8 N -0.565 5.565 9 Si 0.900 3.100 10 H -0.210 1.210 11 H -0.221 1.221 12 H -0.220 1.220 13 C 0.015 3.985 14 C -0.131 4.131 15 H 0.106 0.894 16 C -0.032 4.032 17 N -0.336 5.336 18 C 0.394 3.606 19 O -0.409 6.409 20 C -0.171 4.171 21 C -0.092 4.092 22 N -0.181 5.181 23 C -0.068 4.068 24 C -0.036 4.036 25 C -0.198 4.198 26 C -0.070 4.070 27 N -0.044 5.044 28 N -0.008 5.008 29 C 0.001 3.999 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.044 0.956 35 H 0.080 0.920 36 H 0.047 0.953 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.227 0.773 41 H 0.183 0.817 42 H 0.177 0.823 43 H 0.219 0.781 44 H 0.097 0.903 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.460 -20.277 -8.017 21.854 hybrid contribution -0.258 -1.139 -1.851 2.188 sum -1.718 -21.416 -9.868 23.643 Atomic orbital electron populations 1.21586 0.93166 1.00911 1.02077 1.22282 0.95969 0.97271 0.93203 1.21790 0.96863 0.91915 0.88419 1.45114 1.73367 1.09317 1.04292 1.19759 1.20438 0.96921 1.08067 0.91695 1.25839 0.94675 1.02505 0.99827 1.70785 1.15774 1.31853 1.38071 0.83439 0.75280 0.74960 0.76353 1.21001 1.22055 1.22014 1.21866 0.93304 0.84393 0.98961 1.23139 0.98187 0.94922 0.96895 0.89371 1.22982 0.99637 0.99211 0.81398 1.48439 1.63189 1.07509 1.14504 1.16006 0.79459 0.80424 0.84710 1.90874 1.47153 1.83671 1.19179 1.20838 1.13247 0.83480 0.99497 1.23999 0.95742 0.95951 0.93460 1.70482 1.23054 1.01796 1.22753 1.21344 1.00826 0.94826 0.89788 1.20645 0.96086 0.89455 0.97428 1.21592 1.00696 1.02682 0.94831 1.24322 0.93954 0.88975 0.99738 1.76166 1.15466 1.12295 1.00487 1.46567 1.32935 1.07621 1.13684 1.22202 0.99085 0.82086 0.96487 0.91570 0.92860 0.93406 0.92907 0.95557 0.92034 0.95292 0.91146 0.90025 0.89825 0.77346 0.81675 0.82267 0.78132 0.90287 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.84 8.59 37.16 0.32 -1.52 16 2 C -0.08 -1.39 1.07 -152.40 -0.16 -1.56 16 3 C 0.14 2.68 6.36 -2.49 -0.02 2.67 16 4 N -0.60 -14.26 3.25 -168.74 -0.55 -14.81 16 5 C -0.32 -8.78 10.26 -15.06 -0.15 -8.94 16 6 H 0.07 1.76 7.91 -52.49 -0.42 1.34 16 7 C -0.03 -0.76 5.20 -17.43 -0.09 -0.85 16 8 N -0.92 -26.97 12.71 55.49 0.71 -26.26 16 9 Si 1.07 24.74 29.97 -169.99 -5.09 19.64 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 13 C 0.14 2.98 4.62 -2.27 -0.01 2.97 16 14 C -0.11 -1.84 3.71 -88.28 -0.33 -2.17 16 15 H 0.09 1.46 7.93 -51.92 -0.41 1.04 16 16 C 0.09 1.26 4.92 -2.69 -0.01 1.25 16 17 N -0.60 -9.28 3.34 -172.50 -0.58 -9.85 16 18 C 0.61 10.24 7.82 -13.07 -0.10 10.13 16 19 O -0.53 -10.53 17.04 5.14 0.09 -10.44 16 20 C -0.05 -0.77 7.05 -81.85 -0.58 -1.34 16 21 C 0.07 0.93 10.20 -17.18 -0.18 0.76 16 22 N -0.46 -6.32 11.25 -12.24 -0.14 -6.45 16 23 C 0.18 2.21 7.85 -156.07 -1.23 0.98 16 24 C -0.01 -0.06 10.11 -39.38 -0.40 -0.46 16 25 C -0.17 -0.89 10.03 -39.66 -0.40 -1.29 16 26 C 0.12 0.88 11.30 -17.38 -0.20 0.68 16 27 N -0.23 -3.03 11.66 30.62 0.36 -2.67 16 28 N -0.24 -3.45 4.05 -8.68 -0.04 -3.49 16 29 C 0.12 1.91 6.27 -3.27 -0.02 1.89 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 1.03 7.90 -51.93 -0.41 0.62 16 34 H 0.03 0.52 7.16 -51.93 -0.37 0.15 16 35 H 0.27 7.76 6.15 -40.82 -0.25 7.51 16 36 H 0.03 0.62 6.80 -51.93 -0.35 0.27 16 37 H 0.07 1.66 7.20 -51.93 -0.37 1.29 16 38 H 0.08 1.10 6.99 -51.93 -0.36 0.73 16 39 H 0.08 1.01 5.41 -51.93 -0.28 0.73 16 40 H 0.21 2.34 4.93 -52.49 -0.26 2.08 16 41 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.16 0.15 8.06 -52.49 -0.42 -0.27 16 43 H 0.20 0.53 8.06 -52.48 -0.42 0.11 16 44 H 0.08 1.23 7.58 -51.93 -0.39 0.84 16 45 H 0.07 1.12 7.10 -51.93 -0.37 0.75 16 LS Contribution 361.61 15.07 5.45 5.45 Total: -1.00 -36.50 361.61 -8.92 -45.42 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -5.58 Total: 0.25 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -3.55 Total: 3.21 kcal Atomic # 7 Polarization: -63.30 SS G_CDS: -0.23 Total: -63.54 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.09 Total: 19.64 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.50 -8.92 -45.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092077640.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.691 kcal (2) G-P(sol) polarization free energy of solvation -36.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds