Wall clock time and date at job start Sat Apr 11 2020 06:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.54028 * 112.12700 * 2 1 4 4 N 1.48334 * 104.52971 * 97.20230 * 3 2 1 5 5 C 1.36939 * 128.19691 * 221.77007 * 4 3 2 6 6 H 1.07995 * 120.00055 * 20.18560 * 5 4 3 7 7 C 1.38813 * 119.99742 * 200.18271 * 5 4 3 8 8 N 1.31617 * 120.00402 * 20.95835 * 7 5 4 9 9 Si 1.86800 * 119.99712 * 200.95828 * 7 5 4 10 10 H 1.48506 * 109.47237 * 180.02562 * 9 7 5 11 11 H 1.48500 * 109.47472 * 60.00196 * 9 7 5 12 12 H 1.48503 * 109.46996 * 299.99742 * 9 7 5 13 13 C 1.48335 * 103.60413 * 41.51455 * 4 3 2 14 14 C 1.54453 * 104.31947 * 318.45125 * 13 4 3 15 15 H 1.09008 * 112.30155 * 263.01193 * 14 13 4 16 16 C 1.53748 * 109.01293 * 137.92702 * 14 13 4 17 17 N 1.48247 * 105.90290 * 229.74436 * 16 14 13 18 18 C 1.34778 * 126.41227 * 211.09282 * 17 16 14 19 19 O 1.21758 * 119.99627 * 173.97830 * 18 17 16 20 20 C 1.46194 * 120.00357 * 353.97331 * 18 17 16 21 21 C 1.38716 * 126.75943 * 352.99589 * 20 18 17 22 22 N 1.32279 * 108.17387 * 179.82444 * 21 20 18 23 23 C 1.33136 * 109.71514 * 0.44444 * 22 21 20 24 24 C 1.40624 * 132.28969 * 179.72275 * 23 22 21 25 25 C 1.36306 * 119.22750 * 179.97438 * 24 23 22 26 26 C 1.39875 * 120.11511 * 0.02562 * 25 24 23 27 27 N 1.30806 * 120.78032 * 359.95672 * 26 25 24 28 28 N 1.36643 * 108.62779 * 359.71608 * 23 22 21 29 29 C 1.47191 * 106.87826 * 30.83137 * 17 16 14 30 30 H 1.09000 * 109.47190 * 302.41897 * 1 2 3 31 31 H 1.09001 * 109.47143 * 62.41134 * 1 2 3 32 32 H 1.08997 * 109.47629 * 182.41643 * 1 2 3 33 33 H 1.08993 * 110.39396 * 338.40998 * 3 2 1 34 34 H 1.09000 * 110.33318 * 215.96446 * 3 2 1 35 35 H 0.97003 * 119.99350 * 5.89426 * 8 7 5 36 36 H 1.08993 * 110.46421 * 77.16018 * 13 4 3 37 37 H 1.09004 * 110.46103 * 199.74503 * 13 4 3 38 38 H 1.09003 * 110.06331 * 348.69559 * 16 14 13 39 39 H 1.09004 * 110.06310 * 110.20908 * 16 14 13 40 40 H 1.07998 * 125.91333 * 359.97438 * 21 20 18 41 41 H 1.08000 * 120.38824 * 0.02562 * 24 23 22 42 42 H 1.07999 * 119.94396 * 180.02562 * 25 24 23 43 43 H 1.08004 * 119.60986 * 180.02562 * 26 25 24 44 44 H 1.08999 * 110.06378 * 209.64778 * 29 17 16 45 45 H 1.08996 * 110.06685 * 88.13030 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1101 1.4268 0.0000 4 7 2.4171 1.7038 1.4246 5 6 2.2027 2.8590 2.1279 6 1 1.4856 3.5833 1.7710 7 6 2.9071 3.0990 3.2997 8 7 4.0388 2.4671 3.5285 9 14 2.2489 4.3189 4.5519 10 1 3.1800 4.3942 5.7064 11 1 0.9124 3.8736 5.0217 12 1 2.1315 5.6590 3.9231 13 6 3.0053 0.4310 1.9085 14 6 2.1221 -0.6645 1.2719 15 1 1.3492 -1.0205 1.9531 16 6 3.0230 -1.8032 0.7663 17 7 2.6006 -2.0657 -0.6303 18 6 2.6415 -3.2518 -1.2690 19 8 2.1629 -3.3600 -2.3833 20 6 3.2607 -4.4085 -0.6240 21 6 3.9629 -4.4147 0.5724 22 7 4.3576 -5.6541 0.8126 23 6 3.9551 -6.4528 -0.1736 24 6 4.1157 -7.8314 -0.4001 25 6 3.5815 -8.3879 -1.5238 26 6 2.8831 -7.5916 -2.4374 27 7 2.7319 -6.3092 -2.2289 28 7 3.2668 -5.7054 -1.0872 29 6 2.1238 -0.7863 -1.1802 30 1 -0.3633 0.5509 0.8675 31 1 -0.3633 0.4759 -0.9108 32 1 -0.3634 -1.0267 0.0433 33 1 1.3732 2.1365 -0.3759 34 1 3.0191 1.4661 -0.6002 35 1 4.4243 1.8993 2.8430 36 1 4.0364 0.3343 1.5689 37 1 2.9547 0.3770 2.9961 38 1 4.0674 -1.4920 0.7891 39 1 2.8835 -2.6918 1.3820 40 1 4.1521 -3.5566 1.2003 41 1 4.6555 -8.4422 0.3084 42 1 3.6976 -9.4455 -1.7091 43 1 2.4627 -8.0412 -3.3250 44 1 1.3568 -0.9658 -1.9336 45 1 2.9556 -0.2338 -1.6170 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092077640.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:52 Heat of formation + Delta-G solvation = 113.453271 kcal Electronic energy + Delta-G solvation = -29780.365948 eV Core-core repulsion = 25800.666058 eV Total energy + Delta-G solvation = -3979.699890 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.74959 -41.65521 -39.76681 -39.02239 -36.83576 -34.72441 -34.68907 -32.74150 -32.31531 -31.63465 -30.83898 -28.08582 -27.47697 -26.94422 -25.62233 -25.04473 -24.00427 -23.06604 -22.21618 -21.25548 -20.19774 -19.37096 -18.76534 -18.52200 -18.22760 -17.54293 -16.93517 -16.64556 -16.51978 -16.24027 -15.89990 -15.81737 -15.37134 -15.11933 -14.88049 -14.67209 -14.41650 -14.17515 -13.86930 -13.81191 -13.72514 -13.39238 -13.12598 -12.88329 -12.57899 -12.52220 -12.36507 -12.27465 -12.21819 -11.89698 -11.70374 -11.65021 -11.57003 -11.41455 -11.23631 -11.04729 -10.68329 -10.57981 -9.95805 -9.42480 -9.00836 -8.28336 -5.33267 -0.62905 -0.33302 0.54545 1.10869 1.60523 1.67717 1.72354 1.86443 2.01891 2.20233 2.65867 2.84131 2.97791 3.24274 3.28066 3.34036 3.54126 3.61804 3.75582 3.79102 3.84062 4.02421 4.06645 4.10933 4.19685 4.21045 4.38124 4.41909 4.55026 4.61173 4.68561 4.78029 4.78934 4.82118 4.83924 4.92056 4.96841 5.06700 5.07601 5.15613 5.21962 5.28358 5.31059 5.37206 5.68224 6.23918 6.32988 6.33599 6.38961 6.87905 6.88856 7.69664 8.37779 9.07954 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022851 B = 0.002654 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.019505 B =10547.414649 C =11440.710516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.074 4.074 3 C 0.136 3.864 4 N -0.623 5.623 5 C -0.329 4.329 6 H 0.060 0.940 7 C -0.080 4.080 8 N -0.953 5.953 9 Si 1.118 2.882 10 H -0.292 1.292 11 H -0.280 1.280 12 H -0.277 1.277 13 C 0.149 3.851 14 C -0.100 4.100 15 H 0.093 0.907 16 C 0.098 3.902 17 N -0.601 5.601 18 C 0.608 3.392 19 O -0.570 6.570 20 C -0.094 4.094 21 C 0.077 3.923 22 N -0.489 5.489 23 C 0.178 3.822 24 C -0.031 4.031 25 C -0.134 4.134 26 C 0.135 3.865 27 N -0.296 5.296 28 N -0.254 5.254 29 C 0.128 3.872 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.027 0.973 35 H 0.257 0.743 36 H 0.024 0.976 37 H 0.039 0.961 38 H 0.088 0.912 39 H 0.107 0.893 40 H 0.222 0.778 41 H 0.197 0.803 42 H 0.217 0.783 43 H 0.248 0.752 44 H 0.081 0.919 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.938 -24.811 -9.939 26.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.076 4.076 3 C 0.010 3.990 4 N -0.348 5.348 5 C -0.457 4.457 6 H 0.078 0.922 7 C -0.275 4.275 8 N -0.596 5.596 9 Si 0.943 3.057 10 H -0.218 1.218 11 H -0.206 1.206 12 H -0.203 1.203 13 C 0.023 3.977 14 C -0.121 4.121 15 H 0.111 0.889 16 C -0.023 4.023 17 N -0.333 5.333 18 C 0.398 3.602 19 O -0.451 6.451 20 C -0.214 4.214 21 C -0.084 4.084 22 N -0.209 5.209 23 C -0.068 4.068 24 C -0.058 4.058 25 C -0.159 4.159 26 C -0.056 4.056 27 N -0.107 5.107 28 N -0.022 5.022 29 C 0.006 3.994 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.045 0.955 35 H 0.068 0.932 36 H 0.042 0.958 37 H 0.057 0.943 38 H 0.106 0.894 39 H 0.124 0.876 40 H 0.238 0.762 41 H 0.214 0.786 42 H 0.234 0.766 43 H 0.264 0.736 44 H 0.099 0.901 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.004 -23.573 -8.882 25.271 hybrid contribution -0.078 -0.370 -1.753 1.794 sum -2.082 -23.944 -10.635 26.282 Atomic orbital electron populations 1.21530 0.91925 1.01503 1.02144 1.22145 0.96797 0.95222 0.93470 1.21909 0.96974 0.93834 0.86246 1.45355 1.73651 1.09491 1.06255 1.20002 1.19563 0.97828 1.08355 0.92196 1.27136 0.94518 1.03976 1.01883 1.70884 1.17193 1.33473 1.38056 0.82795 0.74971 0.73869 0.74082 1.21848 1.20619 1.20310 1.21766 0.93795 0.84909 0.97264 1.22980 0.97866 0.94411 0.96803 0.88880 1.22944 0.99232 0.99092 0.81080 1.48376 1.62960 1.07212 1.14741 1.16222 0.78798 0.80890 0.84242 1.90829 1.49139 1.84312 1.20783 1.20632 1.15963 0.83932 1.00846 1.24146 0.94892 0.96491 0.92920 1.70482 1.24500 1.02026 1.23882 1.22199 0.99287 0.96489 0.88841 1.21231 0.97599 0.87524 0.99489 1.22256 0.96642 1.04821 0.92204 1.25346 0.91896 0.87420 1.00901 1.76189 1.18196 1.15279 1.01040 1.46689 1.33471 1.07500 1.14539 1.22101 0.99188 0.82178 0.95931 0.93103 0.91341 0.92348 0.92936 0.95495 0.93218 0.95814 0.94263 0.89351 0.87562 0.76210 0.78598 0.76633 0.73642 0.90062 0.90731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.39 8.59 71.98 0.62 -2.77 16 2 C -0.07 -2.42 1.07 -50.81 -0.05 -2.47 16 3 C 0.14 5.40 6.36 86.37 0.55 5.95 16 4 N -0.62 -30.50 3.25 -687.76 -2.23 -32.73 16 5 C -0.33 -18.20 10.26 84.03 0.86 -17.33 16 6 H 0.06 3.29 7.91 -2.91 -0.02 3.27 16 7 C -0.08 -4.49 5.20 84.86 0.44 -4.05 16 8 N -0.95 -57.30 12.71 21.65 0.28 -57.03 16 9 Si 1.12 50.56 29.97 68.60 2.06 52.61 16 10 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 11 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 13 C 0.15 6.47 4.62 86.52 0.40 6.87 16 14 C -0.10 -3.34 3.71 -9.28 -0.03 -3.37 16 15 H 0.09 3.05 7.93 -2.38 -0.02 3.03 16 16 C 0.10 2.74 4.92 86.30 0.42 3.16 16 17 N -0.60 -18.51 3.34 -817.86 -2.73 -21.24 16 18 C 0.61 20.93 7.82 86.31 0.68 21.61 16 19 O -0.57 -23.15 17.04 -4.53 -0.08 -23.23 16 20 C -0.09 -2.93 7.05 40.40 0.28 -2.65 16 21 C 0.08 2.08 10.20 84.74 0.86 2.94 16 22 N -0.49 -13.19 11.25 -192.64 -2.17 -15.36 16 23 C 0.18 4.22 7.85 134.00 1.05 5.27 16 24 C -0.03 -0.37 10.11 22.40 0.23 -0.14 16 25 C -0.13 -0.69 10.03 22.22 0.22 -0.47 16 26 C 0.14 1.42 11.30 85.24 0.96 2.38 16 27 N -0.30 -7.29 11.66 -57.03 -0.67 -7.95 16 28 N -0.25 -7.25 4.05 -181.39 -0.74 -7.98 16 29 C 0.13 3.95 6.27 86.50 0.54 4.49 16 30 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.05 2.06 7.90 -2.39 -0.02 2.04 16 34 H 0.03 1.08 7.16 -2.39 -0.02 1.06 16 35 H 0.26 15.50 6.15 -92.71 -0.57 14.93 16 36 H 0.02 1.06 6.80 -2.39 -0.02 1.04 16 37 H 0.04 1.93 7.20 -2.39 -0.02 1.91 16 38 H 0.09 2.38 6.99 -2.39 -0.02 2.36 16 39 H 0.11 2.52 5.41 -2.38 -0.01 2.51 16 40 H 0.22 4.94 4.93 -2.91 -0.01 4.93 16 41 H 0.20 0.98 8.06 -2.91 -0.02 0.96 16 42 H 0.22 -1.28 8.06 -2.91 -0.02 -1.31 16 43 H 0.25 0.01 8.06 -2.91 -0.02 -0.01 16 44 H 0.08 2.49 7.58 -2.39 -0.02 2.48 16 45 H 0.07 2.28 7.10 -2.39 -0.02 2.26 16 Total: -1.00 -84.96 361.61 2.99 -81.97 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 1.23 Total: 11.52 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: 8.04 Total: 19.41 kcal Atomic # 7 Polarization: -134.03 SS G_CDS: -8.26 Total: -142.29 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.08 Total: -23.23 kcal Atomic # 14 Polarization: 50.56 SS G_CDS: 2.06 Total: 52.61 kcal Total: -84.96 2.99 -81.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092077640.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.427 kcal (2) G-P(sol) polarization free energy of solvation -84.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds