Wall clock time and date at job start Sat Apr 11 2020 06:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53782 * 111.85945 * 2 1 4 4 N 1.47216 * 106.37288 * 140.62214 * 3 2 1 5 5 C 1.36932 * 126.69939 * 148.72232 * 4 3 2 6 6 H 1.08001 * 119.99919 * 359.97438 * 5 4 3 7 7 C 1.38818 * 120.00242 * 180.02562 * 5 4 3 8 8 N 1.31625 * 119.99311 * 359.97438 * 7 5 4 9 9 Si 1.86788 * 120.00372 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47134 * 59.99822 * 9 7 5 11 11 H 1.48504 * 109.47333 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47286 * 299.99969 * 9 7 5 13 13 C 1.46514 * 106.97183 * 329.54960 * 4 3 2 14 14 C 1.53782 * 106.73230 * 29.90176 * 13 4 3 15 15 H 1.08998 * 112.60013 * 220.37460 * 14 13 4 16 16 C 1.53779 * 109.35149 * 95.36930 * 14 13 4 17 17 N 1.47213 * 106.37855 * 228.53128 * 16 14 13 18 18 C 1.34771 * 126.69886 * 211.26498 * 17 16 14 19 19 O 1.21575 * 120.00021 * 183.62532 * 18 17 16 20 20 C 1.47722 * 120.00214 * 3.62061 * 18 17 16 21 21 C 1.40252 * 119.88101 * 326.37470 * 20 18 17 22 22 C 1.36164 * 120.55447 * 180.29878 * 21 20 18 23 23 C 1.39911 * 119.97626 * 359.70265 * 22 21 20 24 24 N 1.34747 * 134.58757 * 180.02562 * 23 22 21 25 25 N 1.28647 * 109.29483 * 179.97438 * 24 23 22 26 26 N 1.28818 * 111.78539 * 0.02562 * 25 24 23 27 27 H 0.97007 * 125.94024 * 180.02562 * 26 25 24 28 28 C 1.37362 * 108.11912 * 359.97438 * 26 25 24 29 29 C 1.38616 * 134.89456 * 180.02562 * 28 26 25 30 30 C 1.47210 * 106.59863 * 31.52422 * 17 16 14 31 31 H 1.09002 * 109.47126 * 302.05660 * 1 2 3 32 32 H 1.08995 * 109.47147 * 62.06047 * 1 2 3 33 33 H 1.09006 * 109.47131 * 182.05981 * 1 2 3 34 34 H 1.08997 * 110.07372 * 259.85210 * 3 2 1 35 35 H 1.09002 * 110.07267 * 21.33958 * 3 2 1 36 36 H 0.97001 * 119.99254 * 180.02562 * 8 7 5 37 37 H 1.08994 * 108.72839 * 271.19109 * 13 4 3 38 38 H 1.09006 * 111.06598 * 149.89115 * 13 4 3 39 39 H 1.09001 * 110.07728 * 109.29593 * 16 14 13 40 40 H 1.09006 * 110.11822 * 347.78291 * 16 14 13 41 41 H 1.07994 * 119.72545 * 359.97438 * 21 20 18 42 42 H 1.07999 * 120.00925 * 179.68515 * 22 21 20 43 43 H 1.08004 * 120.24533 * 359.97438 * 29 28 26 44 44 H 1.09000 * 110.07413 * 87.69033 * 30 17 16 45 45 H 1.09000 * 110.07570 * 209.23422 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1026 1.4273 0.0000 4 7 3.2704 1.4059 0.8961 5 6 4.4006 2.1710 0.7858 6 1 4.4966 2.8790 -0.0242 7 6 5.4236 2.0361 1.7144 8 7 5.3068 1.1729 2.7013 9 14 6.9657 3.0793 1.5636 10 1 6.6002 4.5167 1.6388 11 1 7.8981 2.7475 2.6708 12 1 7.6245 2.8035 0.2617 13 6 3.0043 0.3937 1.9214 14 6 2.1092 -0.6730 1.2688 15 1 1.3241 -1.0269 1.9369 16 6 2.9851 -1.8267 0.7526 17 7 2.5534 -2.0890 -0.6302 18 6 2.5682 -3.2767 -1.2670 19 8 2.2438 -3.3434 -2.4367 20 6 2.9787 -4.4976 -0.5437 21 6 3.9617 -4.4215 0.4538 22 6 4.3548 -5.5392 1.1249 23 6 3.7723 -6.7755 0.8255 24 7 3.9284 -8.0315 1.2878 25 7 3.1288 -8.8186 0.6584 26 7 2.4248 -8.1861 -0.2155 27 1 1.7593 -8.5781 -0.8024 28 6 2.7798 -6.8599 -0.1711 29 6 2.3846 -5.7181 -0.8506 30 6 2.1085 -0.7995 -1.1836 31 1 -0.3633 0.5454 0.8710 32 1 -0.3633 0.4815 -0.9078 33 1 -0.3634 -1.0271 0.0369 34 1 2.4093 1.7073 -1.0077 35 1 1.3568 2.1295 0.3726 36 1 6.0215 1.0789 3.3504 37 1 2.4789 0.8661 2.7514 38 1 3.9306 -0.0600 2.2739 39 1 2.8341 -2.7147 1.3665 40 1 4.0355 -1.5359 0.7679 41 1 4.4144 -3.4695 0.6881 42 1 5.1161 -5.4714 1.8879 43 1 1.6245 -5.7759 -1.6157 44 1 2.9541 -0.2679 -1.6201 45 1 1.3383 -0.9618 -1.9377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092266288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:01 Heat of formation + Delta-G solvation = 100.246840 kcal Electronic energy + Delta-G solvation = -29943.392359 eV Core-core repulsion = 25963.119795 eV Total energy + Delta-G solvation = -3980.272564 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.33848 -41.79924 -40.10183 -38.44519 -36.63322 -34.99415 -34.58707 -32.64365 -31.78281 -31.71681 -31.50677 -27.99531 -27.63767 -26.81758 -25.47553 -24.72169 -23.92960 -23.51460 -21.84758 -21.15098 -20.18443 -19.48028 -19.30754 -18.63790 -17.55222 -17.31596 -17.17252 -16.84148 -16.59558 -15.93559 -15.80407 -15.52394 -15.27950 -15.05877 -14.76257 -14.46527 -14.16142 -13.82502 -13.56262 -13.39705 -13.34727 -13.25250 -13.13805 -13.04130 -12.80625 -12.68513 -12.45264 -12.36444 -12.32511 -11.95849 -11.91469 -11.81039 -11.45966 -11.35355 -11.26286 -11.14310 -10.67734 -10.14950 -9.82083 -9.51745 -8.83445 -7.69426 -5.15097 -0.80316 0.03476 0.96025 1.37925 1.52414 1.52741 1.59117 1.67387 1.91567 2.49122 2.53960 2.87264 3.24080 3.37191 3.44147 3.58141 3.66960 3.76094 3.78617 3.91264 3.98055 4.00768 4.20262 4.27925 4.33747 4.41048 4.60440 4.69324 4.75782 4.78369 4.82522 4.87568 4.88766 5.00731 5.04287 5.05514 5.12422 5.19868 5.28298 5.31430 5.42652 5.46307 5.56691 5.63798 5.82780 5.90712 6.44008 6.44444 6.94209 7.08315 7.19758 7.84735 8.50335 9.28855 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013551 B = 0.003231 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.702671 B = 8663.156663 C = 9913.820952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.077 4.077 3 C 0.141 3.859 4 N -0.615 5.615 5 C -0.233 4.233 6 H 0.076 0.924 7 C -0.058 4.058 8 N -0.940 5.940 9 Si 0.971 3.029 10 H -0.284 1.284 11 H -0.293 1.293 12 H -0.282 1.282 13 C 0.150 3.850 14 C -0.108 4.108 15 H 0.104 0.896 16 C 0.112 3.888 17 N -0.600 5.600 18 C 0.577 3.423 19 O -0.573 6.573 20 C -0.099 4.099 21 C -0.092 4.092 22 C -0.051 4.051 23 C 0.013 3.987 24 N -0.280 5.280 25 N -0.015 5.015 26 N -0.388 5.388 27 H 0.472 0.528 28 C 0.018 3.982 29 C -0.029 4.029 30 C 0.128 3.872 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.043 0.957 35 H 0.027 0.973 36 H 0.248 0.752 37 H -0.018 1.018 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.063 0.937 41 H 0.152 0.848 42 H 0.162 0.838 43 H 0.160 0.840 44 H 0.053 0.947 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.686 -14.617 -5.011 18.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.079 4.079 3 C 0.015 3.985 4 N -0.339 5.339 5 C -0.362 4.362 6 H 0.094 0.906 7 C -0.251 4.251 8 N -0.589 5.589 9 Si 0.801 3.199 10 H -0.211 1.211 11 H -0.219 1.219 12 H -0.208 1.208 13 C 0.024 3.976 14 C -0.129 4.129 15 H 0.122 0.878 16 C -0.010 4.010 17 N -0.330 5.330 18 C 0.367 3.633 19 O -0.454 6.454 20 C -0.106 4.106 21 C -0.113 4.113 22 C -0.073 4.073 23 C -0.112 4.112 24 N -0.156 5.156 25 N 0.003 4.997 26 N -0.120 5.120 27 H 0.324 0.676 28 C -0.102 4.102 29 C -0.052 4.052 30 C 0.005 3.995 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.045 0.955 36 H 0.058 0.942 37 H 0.000 1.000 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.081 0.919 41 H 0.169 0.831 42 H 0.180 0.820 43 H 0.177 0.823 44 H 0.071 0.929 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.284 -16.016 -4.877 19.144 hybrid contribution 0.422 1.624 -0.717 1.824 sum -8.861 -14.392 -5.593 17.803 Atomic orbital electron populations 1.21629 0.90928 1.02273 1.02708 1.22158 0.96904 0.95000 0.93880 1.21539 0.88942 0.94127 0.93919 1.44561 1.15760 1.43329 1.30266 1.19323 0.93379 1.14467 1.08985 0.90572 1.25414 1.01131 1.01108 0.97401 1.69816 1.33395 1.38983 1.16749 0.85262 0.79622 0.78310 0.76754 1.21054 1.21916 1.20805 1.21630 0.98599 0.88252 0.89145 1.22986 0.97707 0.95388 0.96775 0.87835 1.22510 0.98409 0.98858 0.81191 1.48469 1.62224 1.07225 1.15109 1.17962 0.77376 0.82327 0.85606 1.90767 1.51372 1.86396 1.16852 1.19552 0.99884 0.92492 0.98677 1.21299 0.96184 0.99966 0.93851 1.20129 0.99506 0.87362 1.00282 1.20361 0.98982 0.94324 0.97567 1.75376 1.18047 1.00093 1.22082 1.77914 1.01214 1.21594 0.99008 1.44867 1.32457 1.04394 1.30321 0.67638 1.19550 1.01259 0.87133 1.02273 1.20023 0.99775 0.87223 0.98174 1.22094 0.98755 0.82503 0.96126 0.91861 0.91272 0.91766 0.93837 0.95519 0.94181 0.99973 0.88004 0.88036 0.91854 0.83076 0.82007 0.82270 0.92910 0.89786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.73 8.45 71.98 0.61 -2.12 16 2 C -0.08 -2.32 1.09 -50.91 -0.06 -2.38 16 3 C 0.14 5.26 6.24 86.51 0.54 5.80 16 4 N -0.62 -28.91 3.37 -697.10 -2.35 -31.26 16 5 C -0.23 -12.19 10.33 84.04 0.87 -11.33 16 6 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 7 C -0.06 -3.05 5.49 84.86 0.47 -2.58 16 8 N -0.94 -51.33 10.06 21.65 0.22 -51.11 16 9 Si 0.97 43.61 29.55 68.60 2.03 45.64 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 12 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 13 C 0.15 6.51 5.46 86.64 0.47 6.99 16 14 C -0.11 -3.45 3.69 -9.63 -0.04 -3.48 16 15 H 0.10 2.84 7.88 -2.39 -0.02 2.82 16 16 C 0.11 3.29 4.65 86.51 0.40 3.70 16 17 N -0.60 -17.68 3.32 -818.06 -2.71 -20.40 16 18 C 0.58 16.84 7.58 86.75 0.66 17.50 16 19 O -0.57 -19.78 17.04 -3.95 -0.07 -19.84 16 20 C -0.10 -2.34 5.59 -20.06 -0.11 -2.45 16 21 C -0.09 -2.02 7.73 22.28 0.17 -1.84 16 22 C -0.05 -1.06 10.03 22.19 0.22 -0.84 16 23 C 0.01 0.31 7.36 39.75 0.29 0.60 16 24 N -0.28 -7.02 12.42 -52.39 -0.65 -7.67 16 25 N -0.02 -0.32 13.28 37.02 0.49 0.17 16 26 N -0.39 -5.76 7.08 -51.70 -0.37 -6.13 16 27 H 0.47 2.70 8.96 -219.80 -1.97 0.73 16 28 C 0.02 0.35 7.40 39.02 0.29 0.64 16 29 C -0.03 -0.57 9.62 22.58 0.22 -0.35 16 30 C 0.13 3.92 6.14 86.62 0.53 4.45 16 31 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.04 1.61 7.56 -2.39 -0.02 1.59 16 35 H 0.03 0.99 7.87 -2.39 -0.02 0.97 16 36 H 0.25 13.31 8.31 -92.71 -0.77 12.54 16 37 H -0.02 -0.84 8.14 -2.39 -0.02 -0.86 16 38 H 0.10 5.00 4.87 -2.38 -0.01 4.99 16 39 H 0.10 2.44 6.00 -2.39 -0.01 2.42 16 40 H 0.06 2.21 6.89 -2.38 -0.02 2.19 16 41 H 0.15 3.40 5.40 -2.91 -0.02 3.38 16 42 H 0.16 2.81 8.06 -2.91 -0.02 2.78 16 43 H 0.16 2.54 7.97 -2.91 -0.02 2.52 16 44 H 0.05 1.86 7.47 -2.39 -0.02 1.84 16 45 H 0.08 2.40 7.65 -2.39 -0.02 2.38 16 Total: -1.00 -67.24 359.58 1.21 -66.04 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -0.92 Total: 12.26 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 5.54 Total: 12.30 kcal Atomic # 7 Polarization: -111.03 SS G_CDS: -5.37 Total: -116.40 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.07 Total: -19.84 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -67.24 1.21 -66.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092266288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.282 kcal (2) G-P(sol) polarization free energy of solvation -67.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds