Wall clock time and date at job start Sat Apr 11 2020 06:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34478 * 126.83704 * 2 1 4 4 N 1.36449 * 108.85929 * 179.97438 * 3 2 1 5 5 H 0.96999 * 124.85632 * 180.02562 * 4 3 2 6 6 C 1.34663 * 110.29490 * 359.73081 * 4 3 2 7 7 C 1.36767 * 108.39657 * 0.44175 * 6 4 3 8 8 C 1.47263 * 126.94308 * 179.83584 * 7 6 4 9 9 O 1.21623 * 120.00126 * 179.68585 * 8 7 6 10 10 N 1.34777 * 119.99630 * 359.68272 * 8 7 6 11 11 C 1.46499 * 119.99665 * 179.72408 * 10 8 7 12 12 H 1.09003 * 110.41825 * 325.97771 * 11 10 8 13 13 C 1.54738 * 110.46591 * 203.49206 * 11 10 8 14 14 C 1.53846 * 101.34053 * 265.56955 * 13 11 10 15 15 C 1.53040 * 115.28476 * 105.28567 * 14 13 11 16 16 N 1.47753 * 85.82443 * 93.64833 * 15 14 13 17 17 C 1.36938 * 134.41428 * 203.94211 * 16 15 14 18 18 H 1.07997 * 120.00123 * 180.02562 * 17 16 15 19 19 C 1.38812 * 120.00018 * 0.04070 * 17 16 15 20 20 N 1.31618 * 119.99825 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00014 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46934 * 60.00334 * 21 19 17 23 23 H 1.48508 * 109.46734 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47187 * 299.99899 * 21 19 17 25 25 C 1.47758 * 91.17488 * 23.97253 * 16 15 14 26 26 N 1.46161 * 106.66594 * 335.05801 * 14 13 11 27 27 C 1.37272 * 142.22427 * 196.46860 * 26 14 13 28 28 C 1.34517 * 106.91860 * 179.97438 * 27 26 14 29 29 N 1.33984 * 108.04633 * 0.02562 * 28 27 26 30 30 C 1.30859 * 109.34814 * 0.03713 * 29 28 27 31 31 H 1.08994 * 109.47691 * 270.04283 * 1 2 3 32 32 H 1.09006 * 109.47156 * 30.04364 * 1 2 3 33 33 H 1.09000 * 109.47725 * 150.03941 * 1 2 3 34 34 H 1.08003 * 125.57490 * 359.94496 * 3 2 1 35 35 H 1.08001 * 125.80273 * 180.29739 * 6 4 3 36 36 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 37 37 H 1.08997 * 111.02055 * 23.65874 * 13 11 10 38 38 H 1.08995 * 111.02118 * 147.55715 * 13 11 10 39 39 H 1.08999 * 113.81798 * 207.87328 * 15 14 13 40 40 H 1.09000 * 113.81312 * 339.41950 * 15 14 13 41 41 H 0.96999 * 120.00230 * 179.97438 * 20 19 17 42 42 H 1.09004 * 113.81634 * 221.80221 * 25 16 15 43 43 H 1.08996 * 113.81646 * 90.25266 * 25 16 15 44 44 H 1.08000 * 126.54109 * 359.93275 * 27 26 14 45 45 H 1.07995 * 125.98374 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0763 0.0000 4 7 3.6111 0.6551 0.0006 5 1 4.3841 1.2411 0.0011 6 6 3.6655 -0.6904 0.0069 7 6 2.3863 -1.1742 0.0006 8 6 1.9748 -2.5881 0.0007 9 8 0.7935 -2.8777 0.0004 10 7 2.9072 -3.5613 0.0012 11 6 2.4978 -4.9679 0.0075 12 1 1.5804 -5.0944 0.5824 13 6 3.6250 -5.8569 0.5849 14 6 4.3502 -6.2975 -0.6984 15 6 5.6928 -5.6108 -0.9592 16 7 6.2965 -6.7683 -0.2671 17 6 7.4707 -6.9767 0.4060 18 1 7.6832 -7.9452 0.8339 19 6 8.3876 -5.9429 0.5387 20 7 8.1282 -4.7623 0.0179 21 14 9.9895 -6.2274 1.4564 22 1 10.7593 -7.3058 0.7859 23 1 10.7884 -4.9755 1.4575 24 1 9.6941 -6.6268 2.8559 25 6 5.1275 -7.6113 -0.5924 26 7 3.3715 -6.2184 -1.7811 27 6 3.1393 -6.6398 -3.0668 28 6 1.9470 -6.1370 -3.4342 29 7 1.4610 -5.4280 -2.4064 30 6 2.3093 -5.4703 -1.4109 31 1 -0.3634 0.0008 1.0276 32 1 -0.3634 0.8896 -0.5145 33 1 -0.3634 -0.8903 -0.5132 34 1 1.9869 2.1058 -0.0008 35 1 4.5663 -1.2862 0.0133 36 1 3.8493 -3.3304 0.0018 37 1 4.2861 -5.2795 1.2311 38 1 3.2130 -6.7148 1.1161 39 1 5.9550 -5.5435 -2.0150 40 1 5.8151 -4.6672 -0.4275 41 1 8.7686 -4.0398 0.1110 42 1 4.8028 -8.2496 0.2294 43 1 5.2196 -8.1457 -1.5379 44 1 3.7902 -7.2565 -3.6687 45 1 1.4655 -6.2799 -4.3902 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092413372.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:04 Heat of formation + Delta-G solvation = 148.417001 kcal Electronic energy + Delta-G solvation = -29995.930494 eV Core-core repulsion = 26017.746745 eV Total energy + Delta-G solvation = -3978.183749 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.22611 -41.13524 -38.91176 -38.40941 -35.31421 -33.22569 -32.38151 -31.85363 -30.96184 -29.37397 -28.12432 -27.33349 -26.50366 -25.38183 -24.56578 -22.90922 -21.93586 -21.21064 -20.11598 -19.66105 -19.17352 -18.61045 -18.31433 -17.12097 -16.41965 -16.19434 -15.26475 -15.12989 -14.94595 -14.41815 -14.30619 -14.11016 -13.93739 -13.83464 -13.63691 -13.39112 -13.19322 -13.00824 -12.74904 -12.61359 -12.58058 -12.28666 -12.07766 -11.82136 -11.39061 -11.27619 -11.21640 -11.05405 -10.81982 -10.66878 -10.27043 -9.84410 -9.60724 -9.43437 -9.06119 -9.03153 -8.93056 -8.57980 -8.28502 -8.00795 -7.21839 -6.03616 -3.37692 1.83987 2.37176 2.41872 3.10524 3.17040 3.25337 3.29801 3.30334 3.32417 3.75519 3.80464 4.21127 4.25193 4.58641 4.83815 4.87210 4.90156 4.93487 5.04558 5.10903 5.28944 5.38614 5.40452 5.56212 5.64108 5.74017 5.83658 5.86964 5.91545 5.92090 6.05456 6.08637 6.13890 6.17205 6.21210 6.33131 6.65237 6.75328 6.79956 6.81391 6.85522 6.89816 7.16739 7.25261 7.39589 7.52005 7.68601 7.80460 8.56936 8.59934 8.77127 9.43455 10.24517 11.13513 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009667 B = 0.004047 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2895.889040 B = 6917.356232 C = 9135.262372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.109 4.109 3 C -0.032 4.032 4 N -0.550 5.550 5 H 0.417 0.583 6 C 0.052 3.948 7 C -0.226 4.226 8 C 0.593 3.407 9 O -0.531 6.531 10 N -0.717 5.717 11 C 0.231 3.769 12 H 0.114 0.886 13 C -0.098 4.098 14 C 0.098 3.902 15 C 0.174 3.826 16 N -0.599 5.599 17 C -0.228 4.228 18 H 0.084 0.916 19 C -0.001 4.001 20 N -0.921 5.921 21 Si 0.916 3.084 22 H -0.284 1.284 23 H -0.289 1.289 24 H -0.282 1.282 25 C 0.123 3.877 26 N -0.451 5.451 27 C -0.028 4.028 28 C -0.037 4.037 29 N -0.469 5.469 30 C 0.170 3.830 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.080 0.920 34 H 0.167 0.833 35 H 0.175 0.825 36 H 0.402 0.598 37 H 0.114 0.886 38 H 0.099 0.901 39 H 0.034 0.966 40 H 0.083 0.917 41 H 0.257 0.743 42 H 0.059 0.941 43 H 0.041 0.959 44 H 0.166 0.834 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.500 7.862 0.076 11.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.115 4.115 3 C -0.159 4.159 4 N -0.144 5.144 5 H 0.254 0.746 6 C -0.084 4.084 7 C -0.236 4.236 8 C 0.382 3.618 9 O -0.408 6.408 10 N -0.370 5.370 11 C 0.123 3.877 12 H 0.132 0.868 13 C -0.137 4.137 14 C 0.013 3.987 15 C 0.048 3.952 16 N -0.326 5.326 17 C -0.355 4.355 18 H 0.102 0.898 19 C -0.198 4.198 20 N -0.567 5.567 21 Si 0.746 3.254 22 H -0.210 1.210 23 H -0.214 1.214 24 H -0.208 1.208 25 C -0.004 4.004 26 N -0.134 5.134 27 C -0.162 4.162 28 C -0.186 4.186 29 N -0.187 5.187 30 C -0.094 4.094 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.184 0.816 35 H 0.192 0.808 36 H 0.238 0.762 37 H 0.133 0.867 38 H 0.117 0.883 39 H 0.051 0.949 40 H 0.101 0.899 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.059 0.941 44 H 0.183 0.817 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -9.469 8.154 0.224 12.498 hybrid contribution 2.844 -0.325 -0.105 2.864 sum -6.625 7.829 0.118 10.257 Atomic orbital electron populations 1.20185 0.89400 1.02591 1.01804 1.20538 0.95586 0.90327 1.05052 1.21536 0.82516 0.99095 1.12748 1.41489 1.08267 1.06742 1.57880 0.74649 1.22075 0.98823 0.83876 1.03672 1.20352 0.92653 0.92717 1.17925 1.17375 0.85347 0.83887 0.75182 1.90754 1.16981 1.83545 1.49500 1.45857 1.09974 1.04695 1.76457 1.19708 0.99337 0.80780 0.87838 0.86812 1.22645 0.95684 1.00027 0.95330 1.23849 0.88256 1.01974 0.84594 1.22455 0.82515 0.94043 0.96231 1.45763 1.17962 1.07553 1.61328 1.18961 0.92603 0.97284 1.26677 0.89795 1.24780 0.98730 0.95730 1.00549 1.69767 1.36429 1.01844 1.48685 0.86146 0.82734 0.77026 0.79540 1.21037 1.21435 1.20809 1.22722 0.86739 0.92182 0.98711 1.46604 1.18129 1.37495 1.11157 1.22328 1.00797 1.07467 0.85636 1.22225 0.94658 1.02523 0.99176 1.69828 1.29065 1.20725 0.99111 1.24563 0.87182 0.99433 0.98245 0.91955 0.92618 0.90132 0.81604 0.80806 0.76224 0.86732 0.88263 0.94866 0.89892 0.93324 0.92307 0.94127 0.81701 0.81453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 9.98 36.00 0.36 -0.66 16 2 C -0.11 -1.43 6.35 -102.54 -0.65 -2.08 16 3 C -0.03 -0.32 11.82 -16.83 -0.20 -0.52 16 4 N -0.55 -5.01 5.90 -12.85 -0.08 -5.09 16 5 H 0.42 2.39 8.96 -40.82 -0.37 2.02 16 6 C 0.05 0.60 11.40 -16.84 -0.19 0.41 16 7 C -0.23 -3.26 6.29 -103.35 -0.65 -3.91 16 8 C 0.59 9.90 7.81 -12.59 -0.10 9.80 16 9 O -0.53 -10.43 14.99 5.26 0.08 -10.35 16 10 N -0.72 -10.92 5.10 -54.71 -0.28 -11.20 16 11 C 0.23 3.66 3.25 -67.70 -0.22 3.44 16 12 H 0.11 1.81 7.60 -51.93 -0.39 1.42 16 13 C -0.10 -1.47 6.11 -25.38 -0.15 -1.63 16 14 C 0.10 1.70 1.56 -136.55 -0.21 1.49 16 15 C 0.17 3.64 6.94 -3.34 -0.02 3.62 16 16 N -0.60 -13.62 3.69 -182.63 -0.67 -14.30 16 17 C -0.23 -5.76 10.70 -15.06 -0.16 -5.92 16 18 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 19 C 0.00 -0.02 5.50 -17.43 -0.10 -0.12 16 20 N -0.92 -24.27 11.39 55.49 0.63 -23.64 16 21 Si 0.92 20.30 29.55 -169.99 -5.02 15.28 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 25 C 0.12 2.30 8.46 -3.35 -0.03 2.27 16 26 N -0.45 -7.87 3.37 -103.33 -0.35 -8.22 16 27 C -0.03 -0.46 12.03 -16.43 -0.20 -0.66 16 28 C -0.04 -0.61 11.86 -17.93 -0.21 -0.82 16 29 N -0.47 -9.18 11.25 -10.50 -0.12 -9.30 16 30 C 0.17 3.10 8.22 -154.60 -1.27 1.83 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.08 1.19 6.85 -51.93 -0.36 0.84 16 34 H 0.17 1.13 8.06 -52.48 -0.42 0.71 16 35 H 0.17 1.71 7.45 -52.49 -0.39 1.32 16 36 H 0.40 5.65 7.54 -40.82 -0.31 5.34 16 37 H 0.11 1.74 7.83 -51.93 -0.41 1.33 16 38 H 0.10 1.31 8.11 -51.93 -0.42 0.88 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 1.82 7.09 -51.93 -0.37 1.45 16 41 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 42 H 0.06 1.01 8.09 -51.93 -0.42 0.59 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.17 2.27 8.06 -52.49 -0.42 1.84 16 45 H 0.17 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 377.29 15.07 5.69 5.69 Total: -1.00 -33.65 377.29 -10.07 -43.72 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -5.94 Total: 10.86 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: -4.01 Total: 6.55 kcal Atomic # 7 Polarization: -70.88 SS G_CDS: -0.86 Total: -71.74 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.08 Total: -10.35 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.65 -10.07 -43.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092413372.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.139 kcal (2) G-P(sol) polarization free energy of solvation -33.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds