Wall clock time and date at job start Sat Apr 11 2020 06:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34478 * 126.83704 * 2 1 4 4 N 1.36449 * 108.85929 * 179.97438 * 3 2 1 5 5 H 0.96999 * 124.85632 * 180.02562 * 4 3 2 6 6 C 1.34663 * 110.29490 * 359.73081 * 4 3 2 7 7 C 1.36767 * 108.39657 * 0.44175 * 6 4 3 8 8 C 1.47263 * 126.94308 * 179.83584 * 7 6 4 9 9 O 1.21623 * 120.00126 * 179.68585 * 8 7 6 10 10 N 1.34777 * 119.99630 * 359.68272 * 8 7 6 11 11 C 1.46499 * 119.99665 * 179.72408 * 10 8 7 12 12 H 1.09003 * 110.41825 * 325.97771 * 11 10 8 13 13 C 1.54738 * 110.46591 * 203.49206 * 11 10 8 14 14 C 1.53846 * 101.34053 * 265.56955 * 13 11 10 15 15 C 1.53040 * 115.28476 * 105.28567 * 14 13 11 16 16 N 1.47753 * 85.82443 * 93.64833 * 15 14 13 17 17 C 1.36938 * 134.41428 * 203.94211 * 16 15 14 18 18 H 1.07997 * 120.00123 * 180.02562 * 17 16 15 19 19 C 1.38812 * 120.00018 * 0.04070 * 17 16 15 20 20 N 1.31618 * 119.99825 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00014 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46934 * 60.00334 * 21 19 17 23 23 H 1.48508 * 109.46734 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47187 * 299.99899 * 21 19 17 25 25 C 1.47758 * 91.17488 * 23.97253 * 16 15 14 26 26 N 1.46161 * 106.66594 * 335.05801 * 14 13 11 27 27 C 1.37272 * 142.22427 * 196.46860 * 26 14 13 28 28 C 1.34517 * 106.91860 * 179.97438 * 27 26 14 29 29 N 1.33984 * 108.04633 * 0.02562 * 28 27 26 30 30 C 1.30859 * 109.34814 * 0.03713 * 29 28 27 31 31 H 1.08994 * 109.47691 * 270.04283 * 1 2 3 32 32 H 1.09006 * 109.47156 * 30.04364 * 1 2 3 33 33 H 1.09000 * 109.47725 * 150.03941 * 1 2 3 34 34 H 1.08003 * 125.57490 * 359.94496 * 3 2 1 35 35 H 1.08001 * 125.80273 * 180.29739 * 6 4 3 36 36 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 37 37 H 1.08997 * 111.02055 * 23.65874 * 13 11 10 38 38 H 1.08995 * 111.02118 * 147.55715 * 13 11 10 39 39 H 1.08999 * 113.81798 * 207.87328 * 15 14 13 40 40 H 1.09000 * 113.81312 * 339.41950 * 15 14 13 41 41 H 0.96999 * 120.00230 * 179.97438 * 20 19 17 42 42 H 1.09004 * 113.81634 * 221.80221 * 25 16 15 43 43 H 1.08996 * 113.81646 * 90.25266 * 25 16 15 44 44 H 1.08000 * 126.54109 * 359.93275 * 27 26 14 45 45 H 1.07995 * 125.98374 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0763 0.0000 4 7 3.6111 0.6551 0.0006 5 1 4.3841 1.2411 0.0011 6 6 3.6655 -0.6904 0.0069 7 6 2.3863 -1.1742 0.0006 8 6 1.9748 -2.5881 0.0007 9 8 0.7935 -2.8777 0.0004 10 7 2.9072 -3.5613 0.0012 11 6 2.4978 -4.9679 0.0075 12 1 1.5804 -5.0944 0.5824 13 6 3.6250 -5.8569 0.5849 14 6 4.3502 -6.2975 -0.6984 15 6 5.6928 -5.6108 -0.9592 16 7 6.2965 -6.7683 -0.2671 17 6 7.4707 -6.9767 0.4060 18 1 7.6832 -7.9452 0.8339 19 6 8.3876 -5.9429 0.5387 20 7 8.1282 -4.7623 0.0179 21 14 9.9895 -6.2274 1.4564 22 1 10.7593 -7.3058 0.7859 23 1 10.7884 -4.9755 1.4575 24 1 9.6941 -6.6268 2.8559 25 6 5.1275 -7.6113 -0.5924 26 7 3.3715 -6.2184 -1.7811 27 6 3.1393 -6.6398 -3.0668 28 6 1.9470 -6.1370 -3.4342 29 7 1.4610 -5.4280 -2.4064 30 6 2.3093 -5.4703 -1.4109 31 1 -0.3634 0.0008 1.0276 32 1 -0.3634 0.8896 -0.5145 33 1 -0.3634 -0.8903 -0.5132 34 1 1.9869 2.1058 -0.0008 35 1 4.5663 -1.2862 0.0133 36 1 3.8493 -3.3304 0.0018 37 1 4.2861 -5.2795 1.2311 38 1 3.2130 -6.7148 1.1161 39 1 5.9550 -5.5435 -2.0150 40 1 5.8151 -4.6672 -0.4275 41 1 8.7686 -4.0398 0.1110 42 1 4.8028 -8.2496 0.2294 43 1 5.2196 -8.1457 -1.5379 44 1 3.7902 -7.2565 -3.6687 45 1 1.4655 -6.2799 -4.3902 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092413372.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:00 Heat of formation + Delta-G solvation = 126.684976 kcal Electronic energy + Delta-G solvation = -29996.872865 eV Core-core repulsion = 26017.746745 eV Total energy + Delta-G solvation = -3979.126121 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 2.56 seconds Orbital eigenvalues (eV) -43.59891 -42.04025 -40.26430 -39.83421 -36.70707 -34.78928 -33.52066 -33.29692 -32.23707 -30.44738 -29.63973 -28.85234 -27.39534 -26.97724 -26.02961 -24.20072 -23.30574 -22.65531 -21.24904 -20.93870 -20.20367 -20.03587 -19.18640 -18.84634 -17.81087 -17.38181 -16.88254 -16.60381 -16.16292 -15.84862 -15.72443 -15.35856 -15.23109 -14.98567 -14.84635 -14.62799 -14.41433 -14.33287 -14.05017 -13.90931 -13.58174 -13.53189 -13.25301 -13.23061 -12.92699 -12.79743 -12.76439 -12.38206 -12.25993 -12.20036 -11.97795 -11.63267 -10.92953 -10.88352 -10.83933 -10.43199 -10.29470 -9.54814 -9.33887 -9.15091 -9.04443 -7.94913 -5.29635 0.78888 1.02964 1.50370 1.50976 1.53431 1.56798 1.76686 1.98711 2.40075 2.47035 2.55939 2.57022 2.90159 3.12209 3.29778 3.42703 3.52470 3.59831 4.01887 4.04845 4.08395 4.23510 4.31446 4.37386 4.50509 4.57765 4.59368 4.67638 4.70925 4.74436 4.80350 4.84196 4.92494 4.97983 5.07966 5.15012 5.19372 5.34885 5.37090 5.44239 5.49295 5.81535 5.86583 5.93208 5.98899 6.15654 6.58139 6.71669 6.86244 7.21559 7.36048 7.54338 8.41838 9.21486 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009667 B = 0.004047 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2895.889040 B = 6917.356232 C = 9135.262372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.148 4.148 3 C -0.008 4.008 4 N -0.533 5.533 5 H 0.436 0.564 6 C 0.061 3.939 7 C -0.266 4.266 8 C 0.589 3.411 9 O -0.571 6.571 10 N -0.710 5.710 11 C 0.233 3.767 12 H 0.111 0.889 13 C -0.087 4.087 14 C 0.119 3.881 15 C 0.177 3.823 16 N -0.620 5.620 17 C -0.238 4.238 18 H 0.088 0.912 19 C -0.049 4.049 20 N -0.945 5.945 21 Si 0.974 3.026 22 H -0.284 1.284 23 H -0.294 1.294 24 H -0.274 1.274 25 C 0.125 3.875 26 N -0.455 5.455 27 C -0.031 4.031 28 C -0.042 4.042 29 N -0.506 5.506 30 C 0.158 3.842 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.045 0.955 34 H 0.206 0.794 35 H 0.188 0.812 36 H 0.407 0.593 37 H 0.114 0.886 38 H 0.124 0.876 39 H 0.009 0.991 40 H 0.070 0.930 41 H 0.252 0.748 42 H 0.080 0.920 43 H 0.045 0.955 44 H 0.190 0.810 45 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.816 8.425 0.455 11.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.154 4.154 3 C -0.136 4.136 4 N -0.128 5.128 5 H 0.277 0.723 6 C -0.077 4.077 7 C -0.277 4.277 8 C 0.379 3.621 9 O -0.451 6.451 10 N -0.363 5.363 11 C 0.126 3.874 12 H 0.129 0.871 13 C -0.125 4.125 14 C 0.034 3.966 15 C 0.050 3.950 16 N -0.347 5.347 17 C -0.366 4.366 18 H 0.106 0.894 19 C -0.244 4.244 20 N -0.592 5.592 21 Si 0.803 3.197 22 H -0.211 1.211 23 H -0.221 1.221 24 H -0.200 1.200 25 C -0.001 4.001 26 N -0.138 5.138 27 C -0.165 4.165 28 C -0.190 4.190 29 N -0.225 5.225 30 C -0.106 4.106 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.064 0.936 34 H 0.222 0.778 35 H 0.205 0.795 36 H 0.244 0.756 37 H 0.132 0.868 38 H 0.143 0.857 39 H 0.026 0.974 40 H 0.088 0.912 41 H 0.061 0.939 42 H 0.098 0.902 43 H 0.063 0.937 44 H 0.207 0.793 45 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -8.769 8.711 0.592 12.374 hybrid contribution 2.621 -0.488 -0.312 2.684 sum -6.148 8.223 0.280 10.271 Atomic orbital electron populations 1.20096 0.89538 1.02059 1.01691 1.20811 0.96129 0.91002 1.07457 1.22031 0.82066 0.99938 1.09576 1.41541 1.09002 1.06151 1.56114 0.72329 1.22193 0.98178 0.85010 1.02338 1.20410 0.94480 0.91916 1.20865 1.17819 0.84911 0.85048 0.74291 1.90719 1.18507 1.84267 1.51613 1.45811 1.10064 1.04420 1.75964 1.19730 0.99566 0.81193 0.86958 0.87072 1.22665 0.94924 1.00673 0.94227 1.23466 0.87228 1.00378 0.85524 1.22280 0.84739 0.93582 0.94374 1.45968 1.18260 1.09162 1.61321 1.19291 0.93504 0.97389 1.26440 0.89433 1.25468 1.01421 0.95724 1.01751 1.69910 1.37027 1.02318 1.49970 0.85228 0.79387 0.76369 0.78748 1.21051 1.22061 1.19988 1.22850 0.85119 0.92609 0.99492 1.46631 1.17805 1.37715 1.11611 1.22817 1.01040 1.07287 0.85311 1.22742 0.94889 1.01723 0.99637 1.69817 1.30336 1.22034 1.00353 1.24891 0.87237 0.99647 0.98870 0.91917 0.90107 0.93570 0.77764 0.79541 0.75636 0.86794 0.85747 0.97359 0.91204 0.93868 0.90221 0.93704 0.79257 0.78729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.90 9.98 71.23 0.71 -1.19 16 2 C -0.15 -3.81 6.35 -18.52 -0.12 -3.92 16 3 C -0.01 -0.14 11.82 83.11 0.98 0.84 16 4 N -0.53 -8.37 5.90 -194.56 -1.15 -9.52 16 5 H 0.44 3.57 8.96 -92.71 -0.83 2.74 16 6 C 0.06 1.34 11.40 83.91 0.96 2.30 16 7 C -0.27 -7.75 6.29 -19.04 -0.12 -7.87 16 8 C 0.59 20.37 7.81 86.62 0.68 21.05 16 9 O -0.57 -23.65 14.99 -4.10 -0.06 -23.71 16 10 N -0.71 -22.12 5.10 -445.24 -2.27 -24.39 16 11 C 0.23 7.44 3.25 45.14 0.15 7.58 16 12 H 0.11 3.61 7.60 -2.39 -0.02 3.59 16 13 C -0.09 -2.51 6.11 31.47 0.19 -2.32 16 14 C 0.12 4.04 1.56 5.72 0.01 4.05 16 15 C 0.18 7.43 6.94 86.15 0.60 8.03 16 16 N -0.62 -27.82 3.69 -731.71 -2.70 -30.52 16 17 C -0.24 -11.87 10.70 84.03 0.90 -10.97 16 18 H 0.09 4.18 7.83 -2.91 -0.02 4.16 16 19 C -0.05 -2.50 5.50 84.86 0.47 -2.03 16 20 N -0.94 -50.00 11.39 21.65 0.25 -49.75 16 21 Si 0.97 41.33 29.55 68.60 2.03 43.36 16 22 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 23 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 24 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 25 C 0.12 4.47 8.46 86.14 0.73 5.20 16 26 N -0.45 -15.52 3.37 -480.82 -1.62 -17.15 16 27 C -0.03 -0.98 12.03 82.99 1.00 0.01 16 28 C -0.04 -1.36 11.86 83.51 0.99 -0.37 16 29 N -0.51 -19.87 11.25 -187.12 -2.11 -21.97 16 30 C 0.16 5.75 8.22 138.31 1.14 6.88 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.05 1.45 6.85 -2.39 -0.02 1.44 16 34 H 0.21 1.89 8.06 -2.91 -0.02 1.87 16 35 H 0.19 3.50 7.45 -2.91 -0.02 3.47 16 36 H 0.41 11.66 7.54 -92.71 -0.70 10.96 16 37 H 0.11 3.37 7.83 -2.39 -0.02 3.35 16 38 H 0.12 3.01 8.11 -2.39 -0.02 2.99 16 39 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.07 3.11 7.09 -2.39 -0.02 3.09 16 41 H 0.25 13.06 8.31 -92.71 -0.77 12.29 16 42 H 0.08 2.54 8.09 -2.38 -0.02 2.52 16 43 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.19 4.83 8.06 -2.91 -0.02 4.81 16 45 H 0.20 4.93 8.06 -2.91 -0.02 4.91 16 Total: -1.00 -74.09 377.29 1.14 -72.95 By element: Atomic # 1 Polarization: 33.91 SS G_CDS: -0.48 Total: 33.43 kcal Atomic # 6 Polarization: 18.02 SS G_CDS: 9.26 Total: 27.27 kcal Atomic # 7 Polarization: -143.69 SS G_CDS: -9.60 Total: -153.30 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.06 Total: -23.71 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -74.09 1.14 -72.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092413372.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.635 kcal (2) G-P(sol) polarization free energy of solvation -74.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.56 seconds