Wall clock time and date at job start Sat Apr 11 2020 06:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38361 * 119.85153 * 2 1 4 4 C 1.37958 * 120.14151 * 179.97438 * 3 2 1 5 5 C 1.39572 * 119.85477 * 359.97438 * 4 3 2 6 6 C 1.47849 * 120.14508 * 179.97438 * 5 4 3 7 7 O 1.21551 * 119.99875 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99736 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00017 * 180.02562 * 8 6 5 10 10 C 1.50695 * 109.47705 * 179.97438 * 9 8 6 11 11 C 1.35348 * 126.75026 * 94.99599 * 10 9 8 12 12 N 1.35317 * 106.17735 * 179.78015 * 11 10 9 13 13 C 1.46497 * 125.87017 * 180.21003 * 12 11 10 14 14 C 1.53942 * 113.74196 * 13.74138 * 13 12 11 15 15 N 1.47811 * 86.03642 * 222.08692 * 14 13 12 16 16 C 1.36938 * 134.45712 * 204.64673 * 15 14 13 17 17 H 1.08006 * 119.99731 * 179.86683 * 16 15 14 18 18 C 1.38810 * 119.99900 * 359.86196 * 16 15 14 19 19 N 1.31615 * 120.00084 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99728 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47037 * 60.00258 * 20 18 16 22 22 H 1.48505 * 109.46825 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.46970 * 299.99868 * 20 18 16 24 24 C 1.47587 * 91.05119 * 24.54774 * 15 14 13 25 25 N 1.28721 * 108.26102 * 0.22816 * 12 11 10 26 26 N 1.28636 * 110.17709 * 0.02562 * 25 12 11 27 27 C 1.39581 * 119.71219 * 0.25623 * 5 4 3 28 28 C 1.37962 * 119.84821 * 359.51097 * 27 5 4 29 29 H 1.08999 * 109.47340 * 89.99754 * 1 2 3 30 30 H 1.09001 * 109.47151 * 209.99833 * 1 2 3 31 31 H 1.09002 * 109.47403 * 330.00035 * 1 2 3 32 32 H 1.07994 * 119.92953 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.06924 * 179.97438 * 4 3 2 34 34 H 0.96996 * 120.00676 * 0.02562 * 8 6 5 35 35 H 1.09004 * 109.46926 * 59.99730 * 9 8 6 36 36 H 1.09001 * 109.47077 * 300.00602 * 9 8 6 37 37 H 1.08002 * 126.91502 * 0.05047 * 11 10 9 38 38 H 1.09004 * 112.94415 * 145.33322 * 13 12 11 39 39 H 1.09001 * 113.77001 * 336.34585 * 14 13 12 40 40 H 1.08996 * 113.77272 * 107.74936 * 14 13 12 41 41 H 0.97005 * 119.99940 * 180.02562 * 19 18 16 42 42 H 1.09000 * 113.76860 * 221.15477 * 24 15 14 43 43 H 1.09000 * 113.86642 * 89.77210 * 24 15 14 44 44 H 1.07997 * 120.07434 * 179.72181 * 27 5 4 45 45 H 1.07999 * 119.92283 * 180.23402 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2000 0.0000 4 6 3.5753 1.2070 0.0005 5 6 4.2762 0.0001 0.0016 6 6 5.7547 0.0000 0.0016 7 8 6.3624 1.0527 0.0012 8 7 6.4285 -1.1672 0.0021 9 6 7.8935 -1.1672 0.0027 10 6 8.3959 -2.5880 0.0039 11 6 8.7553 -3.3207 -1.0759 12 7 9.1431 -4.5269 -0.6008 13 6 9.6228 -5.6528 -1.4060 14 6 9.9795 -5.2716 -2.8542 15 7 9.3081 -6.5300 -3.2422 16 6 9.4047 -7.3778 -4.3133 17 1 8.7843 -8.2606 -4.3607 18 6 10.2997 -7.1024 -5.3379 19 7 11.0560 -6.0268 -5.2798 20 14 10.4309 -8.2586 -6.7993 21 1 9.1159 -8.3417 -7.4843 22 1 11.4518 -7.7444 -7.7472 23 1 10.8297 -9.6091 -6.3277 24 6 8.4942 -6.5071 -2.0113 25 7 9.0178 -4.5152 0.6803 26 7 8.5709 -3.3743 1.0719 27 6 3.5753 -1.2070 -0.0033 28 6 2.1957 -1.1999 0.0011 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6522 2.1332 -0.0004 33 1 4.1117 2.1444 0.0001 34 1 5.9436 -2.0072 0.0021 35 1 8.2565 -0.6532 0.8927 36 1 8.2572 -0.6535 -0.8872 37 1 8.7403 -3.0047 -2.1085 38 1 10.3938 -6.2368 -0.9033 39 1 9.4720 -4.3751 -3.2102 40 1 11.0507 -5.2638 -3.0553 41 1 11.6812 -5.8342 -5.9960 42 1 8.3818 -7.4838 -1.5407 43 1 7.5489 -5.9748 -2.1175 44 1 4.1117 -2.1443 -0.0070 45 1 1.6522 -2.1332 0.0011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094335498.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:26 Heat of formation + Delta-G solvation = 145.013197 kcal Electronic energy + Delta-G solvation = -27793.887226 eV Core-core repulsion = 23815.555876 eV Total energy + Delta-G solvation = -3978.331349 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -43.10630 -40.38520 -38.72374 -38.37609 -35.32909 -33.53991 -33.18953 -32.01444 -31.49111 -31.01438 -28.23104 -27.93606 -26.37093 -25.28661 -24.41501 -22.99471 -22.69805 -21.95977 -21.13197 -20.49886 -19.65939 -18.42063 -17.35696 -16.75513 -16.57412 -15.90034 -15.61658 -15.39498 -15.19185 -15.08977 -15.02664 -14.63404 -14.15774 -14.08153 -13.90367 -13.68189 -13.33518 -13.16377 -12.93777 -12.62724 -12.32665 -12.15989 -12.11849 -11.94358 -11.86724 -11.42174 -11.33494 -11.20453 -10.99528 -10.96283 -10.56979 -10.28946 -10.20362 -9.91255 -9.59276 -9.32457 -9.28956 -9.14562 -9.07772 -8.96780 -7.28986 -6.07157 -3.42777 0.55364 1.05526 1.77894 2.38873 2.60766 2.65716 3.25057 3.28460 3.29977 3.30872 3.59320 4.19554 4.30028 4.39369 4.43032 4.57913 4.68246 4.69675 4.71085 4.88290 4.93130 5.02797 5.11887 5.17716 5.18996 5.30457 5.36428 5.37999 5.48486 5.56824 5.64766 5.68634 5.72624 5.96782 6.01690 6.05815 6.07646 6.12358 6.18836 6.21178 6.26842 6.50491 6.56613 6.76628 6.99594 7.13290 7.33283 7.64863 8.03663 8.70175 8.72778 9.39190 10.16366 11.09972 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012432 B = 0.002132 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.733185 B =13131.000015 C =14219.948851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.063 4.063 3 C -0.131 4.131 4 C -0.055 4.055 5 C -0.139 4.139 6 C 0.560 3.440 7 O -0.539 6.539 8 N -0.718 5.718 9 C 0.215 3.785 10 C -0.064 4.064 11 C -0.014 4.014 12 N -0.265 5.265 13 C 0.077 3.923 14 C 0.163 3.837 15 N -0.598 5.598 16 C -0.234 4.234 17 H 0.087 0.913 18 C -0.001 4.001 19 N -0.919 5.919 20 Si 0.920 3.080 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.281 1.281 24 C 0.120 3.880 25 N -0.088 5.088 26 N -0.267 5.267 27 C -0.080 4.080 28 C -0.128 4.128 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.129 0.871 33 H 0.137 0.863 34 H 0.402 0.598 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.191 0.809 38 H 0.132 0.868 39 H 0.042 0.958 40 H 0.092 0.908 41 H 0.260 0.740 42 H 0.062 0.938 43 H 0.043 0.957 44 H 0.127 0.873 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.283 11.164 9.715 22.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.063 4.063 3 C -0.149 4.149 4 C -0.074 4.074 5 C -0.142 4.142 6 C 0.348 3.652 7 O -0.417 6.417 8 N -0.370 5.370 9 C 0.091 3.909 10 C -0.203 4.203 11 C -0.168 4.168 12 N -0.057 5.057 13 C -0.025 4.025 14 C 0.037 3.963 15 N -0.325 5.325 16 C -0.360 4.360 17 H 0.105 0.895 18 C -0.198 4.198 19 N -0.565 5.565 20 Si 0.749 3.251 21 H -0.209 1.209 22 H -0.213 1.213 23 H -0.207 1.207 24 C -0.007 4.007 25 N -0.067 5.067 26 N -0.133 5.133 27 C -0.099 4.099 28 C -0.146 4.146 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.146 0.854 33 H 0.155 0.845 34 H 0.237 0.763 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.208 0.792 38 H 0.150 0.850 39 H 0.059 0.941 40 H 0.110 0.890 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.060 0.940 44 H 0.145 0.855 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -15.474 10.923 10.686 21.747 hybrid contribution -0.163 -0.596 -1.972 2.067 sum -15.636 10.327 8.714 20.666 Atomic orbital electron populations 1.20873 0.90863 1.03123 1.02721 1.20172 0.96403 0.93189 0.96536 1.21042 0.93855 0.97849 1.02137 1.21271 0.93821 0.97762 0.94553 1.19928 0.92746 0.94527 1.06988 1.18236 0.87109 0.83618 0.76273 1.90774 1.69851 1.31074 1.50030 1.45965 1.07270 1.08708 1.75103 1.19306 0.78777 0.89069 1.03787 1.21713 1.10221 0.98483 0.89887 1.23519 1.04746 0.86492 1.02024 1.47925 1.39671 1.12070 1.06054 1.25298 1.00019 0.85582 0.91593 1.22749 1.00919 0.89987 0.82666 1.45663 1.42272 1.23813 1.20742 1.18950 1.19295 1.02077 0.95720 0.89542 1.24855 0.98361 0.97893 0.98713 1.69748 1.26258 1.26319 1.34144 0.86088 0.77581 0.79833 0.81601 1.20860 1.21299 1.20730 1.22928 0.93075 0.97414 0.87307 1.78279 1.18212 1.16528 0.93719 1.75026 1.14605 0.97663 1.26036 1.21342 0.94601 0.97101 0.96808 1.21003 0.93856 0.97935 1.01852 0.90706 0.91213 0.91243 0.85353 0.84546 0.76252 0.89553 0.89402 0.79175 0.85013 0.94089 0.89004 0.93014 0.91967 0.93994 0.85545 0.85358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.59 10.01 36.01 0.36 -0.23 16 2 C -0.06 -0.47 5.89 -104.53 -0.62 -1.09 16 3 C -0.13 -1.04 9.68 -39.64 -0.38 -1.43 16 4 C -0.06 -0.55 9.60 -39.19 -0.38 -0.92 16 5 C -0.14 -1.49 5.87 -104.97 -0.62 -2.11 16 6 C 0.56 7.08 7.77 -12.33 -0.10 6.98 16 7 O -0.54 -8.42 16.35 5.32 0.09 -8.33 16 8 N -0.72 -8.18 5.50 -62.43 -0.34 -8.52 16 9 C 0.22 2.61 6.23 -5.20 -0.03 2.57 16 10 C -0.06 -0.90 6.61 -82.78 -0.55 -1.44 16 11 C -0.01 -0.20 10.72 -17.05 -0.18 -0.38 16 12 N -0.26 -4.25 3.54 -56.31 -0.20 -4.45 16 13 C 0.08 1.31 5.14 -70.15 -0.36 0.95 16 14 C 0.16 3.31 6.90 -2.84 -0.02 3.29 16 15 N -0.60 -13.65 3.70 -177.89 -0.66 -14.31 16 16 C -0.23 -5.96 10.70 -15.06 -0.16 -6.12 16 17 H 0.09 2.12 7.83 -52.48 -0.41 1.71 16 18 C 0.00 -0.01 5.50 -17.43 -0.10 -0.11 16 19 N -0.92 -24.94 11.39 55.49 0.63 -24.31 16 20 Si 0.92 20.56 29.55 -169.99 -5.02 15.54 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 C 0.12 2.18 8.74 -2.96 -0.03 2.16 16 25 N -0.09 -1.52 13.17 60.35 0.79 -0.72 16 26 N -0.27 -4.39 12.41 33.29 0.41 -3.98 16 27 C -0.08 -0.72 9.54 -39.18 -0.37 -1.09 16 28 C -0.13 -1.02 9.68 -39.64 -0.38 -1.40 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 31 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 32 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 33 H 0.14 1.33 7.65 -52.49 -0.40 0.93 16 34 H 0.40 4.04 6.50 -40.82 -0.27 3.78 16 35 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.19 2.41 6.73 -52.49 -0.35 2.05 16 38 H 0.13 2.17 8.14 -51.93 -0.42 1.75 16 39 H 0.04 0.81 6.31 -51.93 -0.33 0.48 16 40 H 0.09 2.08 7.16 -51.93 -0.37 1.70 16 41 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.13 0.95 6.41 -52.49 -0.34 0.61 16 45 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 383.54 15.07 5.78 5.78 Total: -1.00 -31.09 383.54 -8.25 -39.34 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -5.82 Total: 4.34 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -3.91 Total: -0.38 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: 0.64 Total: -56.29 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: 0.09 Total: -8.33 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.09 -8.25 -39.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094335498.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.353 kcal (2) G-P(sol) polarization free energy of solvation -31.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds