Wall clock time and date at job start Sat Apr 11 2020 06:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30902 * 119.96672 * 2 1 4 4 C 1.34155 * 121.17005 * 180.26666 * 3 2 1 5 5 C 1.38706 * 132.24885 * 179.73564 * 4 3 2 6 6 C 1.38841 * 107.67457 * 180.02562 * 5 4 3 7 7 N 1.31300 * 108.99018 * 359.97438 * 6 5 4 8 8 N 1.37267 * 120.89941 * 359.76241 * 4 3 2 9 9 C 1.36069 * 119.97752 * 359.97438 * 8 4 3 10 10 C 1.38071 * 118.89123 * 359.97438 * 9 8 4 11 11 C 1.47592 * 120.50650 * 179.97438 * 10 9 8 12 12 O 1.21586 * 120.00637 * 173.94756 * 11 10 9 13 13 N 1.34781 * 119.99893 * 353.94130 * 11 10 9 14 14 C 1.46504 * 120.00265 * 180.02562 * 13 11 10 15 15 H 1.09000 * 110.68229 * 39.88427 * 14 13 11 16 16 C 1.54848 * 110.62649 * 162.87948 * 14 13 11 17 17 C 1.55849 * 103.44701 * 118.49144 * 16 14 13 18 18 H 1.08996 * 115.55785 * 158.81010 * 17 16 14 19 19 C 1.55847 * 105.06081 * 288.17551 * 17 16 14 20 20 C 1.55865 * 103.53301 * 72.42538 * 19 17 16 21 21 C 1.55846 * 110.62450 * 276.90709 * 14 13 11 22 22 H 1.08998 * 115.56419 * 82.69526 * 21 14 13 23 23 N 1.50239 * 101.04950 * 208.57191 * 21 14 13 24 24 C 1.36939 * 130.83873 * 233.98981 * 23 21 14 25 25 H 1.08003 * 119.99741 * 359.97438 * 24 23 21 26 26 C 1.38816 * 119.99878 * 179.97438 * 24 23 21 27 27 N 1.31613 * 120.00083 * 0.02562 * 26 24 23 28 28 Si 1.86802 * 119.99668 * 179.97438 * 26 24 23 29 29 H 1.48500 * 109.47361 * 0.02562 * 28 26 24 30 30 H 1.48502 * 109.47119 * 120.00227 * 28 26 24 31 31 H 1.48505 * 109.46909 * 240.00084 * 28 26 24 32 32 H 1.09003 * 109.47011 * 263.86066 * 1 2 3 33 33 H 1.08994 * 109.47273 * 23.86194 * 1 2 3 34 34 H 1.09002 * 109.47375 * 143.86546 * 1 2 3 35 35 H 1.07992 * 126.16538 * 0.02562 * 5 4 3 36 36 H 1.07994 * 125.50729 * 179.97438 * 6 5 4 37 37 H 1.07995 * 120.55415 * 179.97438 * 9 8 4 38 38 H 0.96999 * 119.99651 * 0.02562 * 13 11 10 39 39 H 1.08991 * 110.62763 * 359.97438 * 16 14 13 40 40 H 1.08999 * 110.75831 * 237.04422 * 16 14 13 41 41 H 1.09003 * 110.62551 * 190.31883 * 19 17 16 42 42 H 1.09006 * 110.62169 * 313.17074 * 19 17 16 43 43 H 1.08992 * 110.10480 * 241.13347 * 20 19 17 44 44 H 1.09007 * 111.60134 * 117.80696 * 20 19 17 45 45 H 0.96996 * 119.99972 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1340 0.0000 4 6 3.5021 1.1622 -0.0053 5 6 4.4129 2.2083 -0.0113 6 6 5.6874 1.6576 -0.0157 7 7 5.5871 0.3484 -0.0121 8 7 4.2316 -0.0006 -0.0061 9 6 3.5945 -1.2029 -0.0009 10 6 2.2140 -1.2263 0.0057 11 6 1.4864 -2.5104 0.0109 12 8 0.2763 -2.5232 0.1277 13 7 2.1636 -3.6691 -0.1139 14 6 1.4414 -4.9438 -0.1092 15 1 0.5121 -4.8618 -0.6730 16 6 2.3292 -6.0758 -0.6822 17 6 2.4616 -7.0710 0.5098 18 1 2.7327 -8.0921 0.2419 19 6 3.3982 -6.3575 1.5309 20 6 2.5014 -5.2273 2.1204 21 6 1.1584 -5.4091 1.3510 22 1 0.2817 -4.9666 1.8240 23 7 1.1261 -6.9010 1.1767 24 6 0.1727 -7.8222 1.5195 25 1 -0.7394 -7.5017 2.0010 26 6 0.3786 -9.1679 1.2483 27 7 1.4904 -9.5585 0.6621 28 14 -0.9217 -10.4246 1.7167 29 1 -2.0690 -9.7342 2.3587 30 1 -1.3894 -11.1311 0.4970 31 1 -0.3407 -11.4077 2.6660 32 1 -0.3633 -0.1099 1.0218 33 1 -0.3633 0.9398 -0.4157 34 1 -0.3634 -0.8300 -0.6060 35 1 4.1738 3.2614 -0.0124 36 1 6.6119 2.2157 -0.0211 37 1 4.1592 -2.1234 -0.0018 38 1 3.1290 -3.6590 -0.2067 39 1 3.3065 -5.6888 -0.9702 40 1 1.8427 -6.5561 -1.5311 41 1 3.7005 -7.0455 2.3205 42 1 4.2726 -5.9455 1.0269 43 1 2.9381 -4.2520 1.9055 44 1 2.3498 -5.3533 3.1925 45 1 1.6341 -10.4988 0.4722 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096260644.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:38 Heat of formation + Delta-G solvation = 142.346342 kcal Electronic energy + Delta-G solvation = -29796.525790 eV Core-core repulsion = 25818.078797 eV Total energy + Delta-G solvation = -3978.446993 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.65999 -40.36550 -38.97730 -37.73634 -34.93801 -33.92966 -32.45771 -32.21439 -30.19435 -29.24872 -29.06969 -28.28930 -27.49792 -25.07916 -24.20608 -22.99479 -21.84813 -21.50573 -21.10350 -19.66005 -18.92927 -18.71356 -17.90577 -16.96315 -16.64840 -16.48217 -15.67649 -15.43995 -15.18455 -14.88867 -14.47471 -14.35900 -14.25628 -13.96560 -13.65166 -13.58033 -13.11214 -12.60894 -12.42342 -12.16168 -11.99717 -11.89187 -11.63667 -11.57372 -11.56447 -11.11520 -11.00923 -10.96209 -10.89462 -10.35597 -10.31932 -10.12461 -9.92558 -9.77270 -9.73719 -9.52152 -9.33046 -9.00624 -8.69217 -8.25786 -6.98890 -5.79023 -3.17095 0.00410 0.35562 1.61992 2.14669 2.70823 3.00900 3.26984 3.36053 3.42240 3.44066 3.49919 3.71804 3.80895 4.37891 4.45687 4.58983 4.82615 4.89790 5.07198 5.10586 5.31215 5.38665 5.43992 5.51295 5.57933 5.65012 5.68915 5.75528 5.84357 5.93187 5.96968 6.00351 6.10062 6.13986 6.20508 6.23523 6.43593 6.48961 6.52461 6.70639 6.84334 6.89764 7.02350 7.16727 7.32412 7.45557 7.50083 7.71995 8.08739 8.16652 9.04308 9.67026 10.45954 11.30725 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023220 B = 0.002696 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.573132 B =10384.183255 C =11189.358678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.258 3.742 3 N -0.475 5.475 4 C 0.269 3.731 5 C -0.270 4.270 6 C 0.099 3.901 7 N -0.313 5.313 8 N -0.318 5.318 9 C 0.209 3.791 10 C -0.229 4.229 11 C 0.571 3.429 12 O -0.518 6.518 13 N -0.705 5.705 14 C 0.129 3.871 15 H 0.087 0.913 16 C -0.142 4.142 17 C 0.154 3.846 18 H 0.156 0.844 19 C -0.137 4.137 20 C -0.130 4.130 21 C 0.129 3.871 22 H 0.087 0.913 23 N -0.589 5.589 24 C -0.210 4.210 25 H 0.081 0.919 26 C -0.012 4.012 27 N -0.923 5.923 28 Si 0.917 3.083 29 H -0.280 1.280 30 H -0.290 1.290 31 H -0.291 1.291 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.112 0.888 35 H 0.164 0.836 36 H 0.201 0.799 37 H 0.183 0.817 38 H 0.391 0.609 39 H 0.054 0.946 40 H 0.068 0.932 41 H 0.055 0.945 42 H 0.045 0.955 43 H 0.046 0.954 44 H 0.054 0.946 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.036 19.429 -3.081 20.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.093 3.907 3 N -0.188 5.188 4 C 0.043 3.957 5 C -0.301 4.301 6 C -0.081 4.081 7 N -0.136 5.136 8 N -0.088 5.088 9 C 0.071 3.929 10 C -0.239 4.239 11 C 0.356 3.644 12 O -0.395 6.395 13 N -0.355 5.355 14 C 0.024 3.976 15 H 0.105 0.895 16 C -0.182 4.182 17 C 0.047 3.953 18 H 0.173 0.827 19 C -0.177 4.177 20 C -0.170 4.170 21 C 0.020 3.980 22 H 0.105 0.895 23 N -0.309 5.309 24 C -0.338 4.338 25 H 0.098 0.902 26 C -0.207 4.207 27 N -0.571 5.571 28 Si 0.748 3.252 29 H -0.205 1.205 30 H -0.217 1.217 31 H -0.218 1.218 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.131 0.869 35 H 0.181 0.819 36 H 0.217 0.783 37 H 0.200 0.800 38 H 0.226 0.774 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.504 18.933 -2.969 20.238 hybrid contribution 0.124 -0.519 0.257 0.592 sum 6.629 18.414 -2.711 19.758 Atomic orbital electron populations 1.21145 0.85619 1.04724 1.05254 1.22051 0.98328 0.85459 0.84840 1.68123 1.03654 1.28152 1.18835 1.20900 0.88294 0.86998 0.99459 1.21012 0.89574 0.98815 1.20651 1.23954 0.99068 0.90969 0.94068 1.77953 0.88877 1.15576 1.31238 1.47117 1.07871 1.06038 1.47800 1.22514 0.91919 0.88733 0.89773 1.20813 0.91580 0.97579 1.13943 1.17323 0.87094 0.82319 0.77687 1.90779 1.12815 1.86421 1.49502 1.46233 1.10298 1.06260 1.72741 1.22750 0.95237 0.79864 0.99733 0.89512 1.23319 0.97253 0.96740 1.00849 1.23782 0.84413 0.99126 0.87972 0.82748 1.23233 0.96917 0.97424 1.00109 1.23067 0.97540 0.96934 0.99413 1.23189 0.95614 0.86556 0.92648 0.89454 1.46495 1.17221 0.99386 1.67810 1.19114 0.96414 0.86400 1.31908 0.90167 1.24703 0.97852 0.96753 1.01389 1.69429 1.25050 1.14970 1.47679 0.85955 0.80415 0.81259 0.77615 1.20500 1.21750 1.21798 0.88702 0.90523 0.86945 0.81854 0.78261 0.79965 0.77386 0.92755 0.91310 0.92644 0.93614 0.93558 0.92756 0.93557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 8.93 36.00 0.32 -0.84 16 2 C 0.26 3.09 6.87 -81.73 -0.56 2.53 16 3 N -0.47 -6.05 10.37 -8.17 -0.08 -6.14 16 4 C 0.27 3.35 7.91 -155.32 -1.23 2.12 16 5 C -0.27 -2.70 10.91 -39.19 -0.43 -3.13 16 6 C 0.10 0.87 11.95 -17.56 -0.21 0.66 16 7 N -0.31 -3.60 12.65 30.49 0.39 -3.22 16 8 N -0.32 -3.80 3.88 -11.68 -0.05 -3.85 16 9 C 0.21 2.17 10.82 -15.73 -0.17 2.00 16 10 C -0.23 -2.64 5.88 -104.88 -0.62 -3.26 16 11 C 0.57 7.54 7.68 -12.44 -0.10 7.45 16 12 O -0.52 -8.20 13.23 5.29 0.07 -8.13 16 13 N -0.70 -8.99 3.58 -52.41 -0.19 -9.17 16 14 C 0.13 2.16 3.04 -65.43 -0.20 1.96 16 15 H 0.09 1.61 7.79 -51.93 -0.40 1.20 16 16 C -0.14 -2.46 6.20 -24.24 -0.15 -2.61 16 17 C 0.15 3.26 4.72 -62.80 -0.30 2.96 16 18 H 0.16 3.80 5.52 -51.93 -0.29 3.52 16 19 C -0.14 -2.49 6.46 -23.68 -0.15 -2.64 16 20 C -0.13 -2.25 6.42 -23.68 -0.15 -2.40 16 21 C 0.13 2.51 5.27 -62.80 -0.33 2.18 16 22 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 23 N -0.59 -13.92 2.98 -145.80 -0.43 -14.35 16 24 C -0.21 -5.59 10.59 -15.06 -0.16 -5.75 16 25 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 26 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 27 N -0.92 -25.39 10.46 55.49 0.58 -24.81 16 28 Si 0.92 21.49 29.55 -169.99 -5.02 16.46 16 29 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 30 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 31 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.11 1.30 5.91 -51.93 -0.31 0.99 16 35 H 0.16 1.28 8.06 -52.49 -0.42 0.85 16 36 H 0.20 0.88 8.06 -52.49 -0.42 0.45 16 37 H 0.18 1.37 6.49 -52.49 -0.34 1.03 16 38 H 0.39 3.95 6.22 -40.82 -0.25 3.70 16 39 H 0.05 0.77 7.31 -51.93 -0.38 0.39 16 40 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.05 0.69 7.82 -51.93 -0.41 0.28 16 43 H 0.05 0.67 6.62 -51.93 -0.34 0.33 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 361.96 15.07 5.45 5.45 Total: -1.00 -31.28 361.96 -9.46 -40.73 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -5.65 Total: 6.18 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -4.53 Total: 0.83 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: 0.21 Total: -61.54 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: 0.07 Total: -8.13 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.28 -9.46 -40.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096260644.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.081 kcal (2) G-P(sol) polarization free energy of solvation -31.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds