Wall clock time and date at job start Sat Apr 11 2020 06:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39964 * 119.95291 * 2 1 4 4 C 1.35760 * 119.35561 * 179.61275 * 3 2 1 5 5 N 1.36311 * 119.15714 * 0.62671 * 4 3 2 6 6 N 1.39905 * 132.16273 * 179.21421 * 5 4 3 7 7 C 1.30705 * 109.51883 * 180.02562 * 6 5 4 8 8 C 1.40639 * 108.72669 * 0.02562 * 7 6 5 9 9 C 1.46580 * 126.54269 * 180.02562 * 8 7 6 10 10 O 1.21719 * 120.00418 * 180.02562 * 9 8 7 11 11 N 1.34778 * 119.99649 * 0.02562 * 9 8 7 12 12 C 1.46499 * 119.99921 * 180.02562 * 11 9 8 13 13 H 1.09001 * 110.68413 * 37.01000 * 12 11 9 14 14 C 1.54850 * 110.62873 * 159.99823 * 12 11 9 15 15 C 1.55847 * 103.44660 * 118.48627 * 14 12 11 16 16 H 1.09001 * 115.55794 * 158.81469 * 15 14 12 17 17 C 1.55841 * 105.06684 * 288.17733 * 15 14 12 18 18 C 1.55876 * 103.52921 * 72.42828 * 17 15 14 19 19 C 1.55848 * 110.62795 * 274.02519 * 12 11 9 20 20 H 1.08999 * 115.56400 * 82.69735 * 19 12 11 21 21 N 1.50241 * 101.04854 * 32.94457 * 15 14 12 22 22 C 1.36931 * 130.84272 * 126.01479 * 21 15 14 23 23 H 1.08003 * 120.00334 * 180.02562 * 22 21 15 24 24 C 1.38817 * 119.99756 * 0.02562 * 22 21 15 25 25 N 1.31617 * 119.99987 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99748 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47119 * 60.00530 * 26 24 22 28 28 H 1.48502 * 109.46675 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.47216 * 299.99816 * 26 24 22 30 30 C 1.36591 * 119.72874 * 359.54559 * 5 4 3 31 31 N 1.31511 * 119.94433 * 180.02562 * 2 1 3 32 32 H 1.08997 * 109.47161 * 269.97985 * 1 2 3 33 33 H 1.09006 * 109.46870 * 29.97941 * 1 2 3 34 34 H 1.08993 * 109.47174 * 149.97888 * 1 2 3 35 35 H 1.07993 * 120.31779 * 0.02562 * 3 2 1 36 36 H 1.08007 * 120.41432 * 179.89437 * 4 3 2 37 37 H 1.07999 * 125.63508 * 179.97438 * 7 6 5 38 38 H 0.96993 * 119.99991 * 0.02562 * 11 9 8 39 39 H 1.09000 * 110.62664 * 359.97438 * 14 12 11 40 40 H 1.09004 * 110.62989 * 236.97967 * 14 12 11 41 41 H 1.08994 * 110.62475 * 190.31370 * 17 15 14 42 42 H 1.08997 * 110.62782 * 313.17550 * 17 15 14 43 43 H 1.09004 * 110.10034 * 241.14157 * 18 17 15 44 44 H 1.09000 * 111.60397 * 117.80726 * 18 17 15 45 45 H 0.97002 * 119.99939 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2058 1.2127 0.0000 4 6 3.5633 1.1986 0.0080 5 7 4.2150 0.0014 0.0028 6 7 5.5748 -0.3276 -0.0058 7 6 5.7096 -1.6277 -0.0084 8 6 4.4313 -2.2142 -0.0022 9 6 4.1292 -3.6485 -0.0022 10 8 2.9723 -4.0268 0.0031 11 7 5.1324 -4.5485 -0.0080 12 6 4.8305 -5.9820 -0.0085 13 1 3.9515 -6.1901 -0.6186 14 6 6.0483 -6.7959 -0.5109 15 6 6.4117 -7.6947 0.7093 16 1 6.9930 -8.5876 0.4790 17 6 7.0328 -6.7231 1.7575 18 6 5.8058 -5.9136 2.2762 19 6 4.6238 -6.5001 1.4468 20 1 3.6304 -6.3408 1.8661 21 7 5.0537 -7.9328 1.3062 22 6 4.4068 -9.0971 1.6239 23 1 3.4159 -9.0647 2.0524 24 6 5.0245 -10.3190 1.3953 25 7 6.2322 -10.3584 0.8736 26 14 4.1416 -11.9073 1.8281 27 1 2.8755 -11.9957 1.0573 28 1 5.0094 -13.0639 1.4898 29 1 3.8386 -11.9249 3.2818 30 6 3.4971 -1.1607 -0.0008 31 7 2.1634 -1.1396 -0.0005 32 1 -0.3633 -0.0004 1.0276 33 1 -0.3633 0.8902 -0.5135 34 1 -0.3633 -0.8897 -0.5141 35 1 1.6702 2.1505 0.0004 36 1 4.1198 2.1242 0.0064 37 1 6.6475 -2.1630 -0.0152 38 1 6.0543 -4.2470 -0.0118 39 1 6.8768 -6.1329 -0.7601 40 1 5.7733 -7.4076 -1.3702 41 1 7.4862 -7.2810 2.5768 42 1 7.7670 -6.0691 1.2872 43 1 5.9378 -4.8534 2.0597 44 1 5.6424 -6.0714 3.3422 45 1 6.6640 -11.2123 0.7142 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096367158.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:48 Heat of formation + Delta-G solvation = 137.786394 kcal Electronic energy + Delta-G solvation = -29524.530527 eV Core-core repulsion = 25545.885800 eV Total energy + Delta-G solvation = -3978.644727 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.70247 -39.75954 -38.70286 -37.79339 -34.44499 -33.74362 -32.51701 -32.19059 -30.14095 -29.11413 -28.92755 -28.58419 -27.30565 -24.64552 -24.04814 -23.06823 -22.64157 -21.24125 -20.31029 -19.42498 -18.76038 -18.40209 -17.49008 -17.07336 -16.52156 -16.46208 -15.74868 -15.15009 -14.87185 -14.65397 -14.59977 -14.18226 -14.01850 -13.88032 -13.60419 -13.52358 -13.11013 -12.70444 -12.23588 -12.17231 -12.12327 -11.75659 -11.68189 -11.48115 -11.38235 -10.94468 -10.83250 -10.79911 -10.72621 -10.12946 -10.06526 -10.03804 -9.83599 -9.74306 -9.47618 -9.25019 -9.14688 -8.85598 -8.42477 -8.12301 -6.82811 -5.65589 -3.02834 0.08997 0.46764 1.63476 1.98324 2.90352 3.40873 3.45363 3.48926 3.49683 3.52400 3.79027 3.84717 3.94027 4.37679 4.53051 4.62448 4.78272 4.84539 4.98536 5.15273 5.20840 5.30734 5.38099 5.44455 5.47201 5.70215 5.75541 5.90886 5.93384 5.96223 6.04851 6.12898 6.19494 6.21840 6.41862 6.43664 6.63790 6.70988 6.82498 6.92902 7.01449 7.07622 7.12229 7.37312 7.39073 7.60498 7.84394 8.05529 8.24904 8.78205 9.18115 9.80479 10.61960 11.44138 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021014 B = 0.002643 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.096950 B =10592.841759 C =11519.981505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.206 3.794 3 C -0.220 4.220 4 C 0.166 3.834 5 N -0.312 5.312 6 N -0.314 5.314 7 C 0.128 3.872 8 C -0.281 4.281 9 C 0.589 3.411 10 O -0.531 6.531 11 N -0.712 5.712 12 C 0.134 3.866 13 H 0.082 0.918 14 C -0.141 4.141 15 C 0.154 3.846 16 H 0.154 0.846 17 C -0.136 4.136 18 C -0.129 4.129 19 C 0.128 3.872 20 H 0.084 0.916 21 N -0.591 5.591 22 C -0.207 4.207 23 H 0.078 0.922 24 C -0.014 4.014 25 N -0.925 5.925 26 Si 0.916 3.084 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.287 1.287 30 C 0.321 3.679 31 N -0.440 5.440 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.170 0.830 36 H 0.183 0.817 37 H 0.205 0.795 38 H 0.390 0.610 39 H 0.054 0.946 40 H 0.065 0.935 41 H 0.052 0.948 42 H 0.045 0.955 43 H 0.050 0.950 44 H 0.051 0.949 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.305 26.682 -3.106 27.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.043 3.957 3 C -0.244 4.244 4 C 0.030 3.970 5 N -0.082 5.082 6 N -0.136 5.136 7 C -0.053 4.053 8 C -0.297 4.297 9 C 0.375 3.625 10 O -0.408 6.408 11 N -0.363 5.363 12 C 0.028 3.972 13 H 0.100 0.900 14 C -0.181 4.181 15 C 0.047 3.953 16 H 0.171 0.829 17 C -0.176 4.176 18 C -0.169 4.169 19 C 0.019 3.981 20 H 0.102 0.898 21 N -0.312 5.312 22 C -0.335 4.335 23 H 0.096 0.904 24 C -0.209 4.209 25 N -0.574 5.574 26 Si 0.747 3.253 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.213 1.213 30 C 0.089 3.911 31 N -0.152 5.152 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.187 0.813 36 H 0.200 0.800 37 H 0.221 0.779 38 H 0.224 0.776 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.725 26.174 -3.083 26.617 hybrid contribution 0.136 -0.402 0.278 0.508 sum -3.589 25.772 -2.805 26.171 Atomic orbital electron populations 1.20859 0.86739 1.04707 1.04318 1.22127 0.98303 0.87395 0.87866 1.21764 0.92447 1.01375 1.08853 1.22094 0.92681 0.88488 0.93716 1.47030 1.07777 1.06413 1.46930 1.77570 0.88701 1.15925 1.31379 1.24164 0.98427 0.90626 0.92123 1.19621 0.90341 0.93690 1.26050 1.16746 0.85491 0.83380 0.76847 1.90838 1.19666 1.80386 1.49861 1.45953 1.08189 1.06807 1.75301 1.22551 0.98724 0.76751 0.99181 0.90001 1.23303 0.95550 0.98281 1.00955 1.23757 0.87742 0.95659 0.88112 0.82910 1.23215 0.95970 0.98115 1.00251 1.23048 0.97200 0.97519 0.99104 1.23198 0.95962 0.85914 0.92990 0.89831 1.46481 1.14555 0.98899 1.71220 1.19030 0.98420 0.82319 1.33742 0.90399 1.24681 0.96861 0.97356 1.01959 1.69426 1.13772 1.24055 1.50118 0.86112 0.78420 0.82736 0.78027 1.21244 1.21643 1.21335 1.20378 0.87884 0.86203 0.96632 1.68207 1.03729 1.28201 1.15112 0.88953 0.89602 0.89158 0.81278 0.79981 0.77870 0.77586 0.92760 0.91658 0.92865 0.93591 0.93120 0.93062 0.93600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.19 36.00 0.37 -0.25 16 2 C 0.21 1.87 6.83 -82.09 -0.56 1.30 16 3 C -0.22 -1.26 9.72 -39.82 -0.39 -1.65 16 4 C 0.17 1.18 11.29 -16.45 -0.19 0.99 16 5 N -0.31 -3.65 3.86 -11.97 -0.05 -3.70 16 6 N -0.31 -3.78 12.58 30.76 0.39 -3.39 16 7 C 0.13 1.48 11.44 -17.13 -0.20 1.29 16 8 C -0.28 -4.22 6.17 -104.66 -0.65 -4.87 16 9 C 0.59 10.48 7.78 -12.90 -0.10 10.38 16 10 O -0.53 -11.67 16.47 5.17 0.09 -11.58 16 11 N -0.71 -11.42 3.65 -52.73 -0.19 -11.61 16 12 C 0.13 2.63 3.08 -65.44 -0.20 2.43 16 13 H 0.08 1.82 7.71 -51.93 -0.40 1.42 16 14 C -0.14 -2.74 6.20 -24.24 -0.15 -2.89 16 15 C 0.15 3.53 4.72 -62.80 -0.30 3.23 16 16 H 0.15 3.99 5.52 -51.93 -0.29 3.70 16 17 C -0.14 -2.67 6.46 -23.68 -0.15 -2.83 16 18 C -0.13 -2.49 6.42 -23.67 -0.15 -2.64 16 19 C 0.13 2.82 5.30 -62.79 -0.33 2.49 16 20 H 0.08 1.94 8.14 -51.93 -0.42 1.52 16 21 N -0.59 -15.13 2.98 -145.81 -0.43 -15.56 16 22 C -0.21 -5.85 10.59 -15.06 -0.16 -6.01 16 23 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -26.62 10.47 55.49 0.58 -26.03 16 26 Si 0.92 22.45 29.55 -169.99 -5.02 17.43 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 29 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 30 C 0.32 4.70 7.74 -155.83 -1.21 3.49 16 31 N -0.44 -6.28 10.18 -8.24 -0.08 -6.36 16 32 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.21 8.09 -51.93 -0.42 -0.21 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.17 0.21 8.06 -52.49 -0.42 -0.21 16 36 H 0.18 0.58 8.06 -52.48 -0.42 0.15 16 37 H 0.20 1.55 7.46 -52.49 -0.39 1.16 16 38 H 0.39 4.99 6.97 -40.82 -0.28 4.70 16 39 H 0.05 0.87 7.34 -51.93 -0.38 0.49 16 40 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.05 0.75 7.82 -51.93 -0.41 0.35 16 43 H 0.05 0.85 6.56 -51.93 -0.34 0.51 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 369.06 15.07 5.56 5.56 Total: -1.00 -37.09 369.06 -9.46 -46.55 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -5.84 Total: 4.70 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -4.46 Total: 4.00 kcal Atomic # 7 Polarization: -66.87 SS G_CDS: 0.21 Total: -66.66 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.09 -9.46 -46.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096367158.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.338 kcal (2) G-P(sol) polarization free energy of solvation -37.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds