Wall clock time and date at job start Sat Apr 11 2020 06:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30896 * 119.96788 * 2 1 4 4 C 1.34152 * 121.17193 * 179.97438 * 3 2 1 5 5 C 1.38706 * 132.24986 * 179.97438 * 4 3 2 6 6 C 1.38842 * 107.67533 * 180.02562 * 5 4 3 7 7 N 1.31296 * 108.98825 * 0.02562 * 6 5 4 8 8 N 1.37270 * 120.90205 * 0.02562 * 4 3 2 9 9 C 1.36081 * 119.96787 * 359.69437 * 8 4 3 10 10 C 1.38067 * 118.89361 * 0.56693 * 9 8 4 11 11 C 1.47593 * 120.50336 * 179.73290 * 10 9 8 12 12 O 1.21585 * 120.00394 * 173.56288 * 11 10 9 13 13 N 1.34782 * 119.99886 * 353.56011 * 11 10 9 14 14 C 1.46503 * 119.99784 * 180.02562 * 13 11 10 15 15 H 1.08994 * 110.56348 * 32.09786 * 14 13 11 16 16 C 1.54855 * 110.62278 * 269.02423 * 14 13 11 17 17 C 1.56301 * 103.40373 * 241.38251 * 16 14 13 18 18 H 1.09002 * 115.71249 * 158.93712 * 17 16 14 19 19 C 1.55848 * 105.08503 * 288.43049 * 17 16 14 20 20 C 1.54218 * 103.56407 * 71.69136 * 19 17 16 21 21 C 1.55844 * 103.56568 * 359.97438 * 20 19 17 22 22 H 1.08998 * 116.12691 * 159.06384 * 21 20 19 23 23 N 1.50236 * 100.84085 * 33.12873 * 17 16 14 24 24 C 1.36936 * 130.84168 * 126.10508 * 23 17 16 25 25 H 1.08005 * 120.00329 * 190.49992 * 24 23 17 26 26 C 1.38807 * 119.99980 * 10.49089 * 24 23 17 27 27 N 1.31621 * 119.99995 * 8.19089 * 26 24 23 28 28 Si 1.86806 * 120.00240 * 188.18684 * 26 24 23 29 29 H 1.48500 * 109.46893 * 265.08087 * 28 26 24 30 30 H 1.48498 * 109.47310 * 145.08157 * 28 26 24 31 31 H 1.48498 * 109.46958 * 25.07789 * 28 26 24 32 32 H 1.08994 * 109.47369 * 263.43847 * 1 2 3 33 33 H 1.08997 * 109.47198 * 23.43536 * 1 2 3 34 34 H 1.09006 * 109.47359 * 143.43357 * 1 2 3 35 35 H 1.07997 * 126.16324 * 0.02562 * 5 4 3 36 36 H 1.07996 * 125.50514 * 180.02562 * 6 5 4 37 37 H 1.07999 * 120.54895 * 180.30677 * 9 8 4 38 38 H 0.96992 * 120.00102 * 0.02562 * 13 11 10 39 39 H 1.08990 * 110.63004 * 0.02562 * 16 14 13 40 40 H 1.08999 * 110.62272 * 123.02651 * 16 14 13 41 41 H 1.09001 * 110.62456 * 190.09572 * 19 17 16 42 42 H 1.08998 * 110.62238 * 312.95466 * 19 17 16 43 43 H 1.09000 * 110.64085 * 241.44143 * 20 19 17 44 44 H 1.08997 * 110.49644 * 118.49248 * 20 19 17 45 45 H 0.97006 * 119.99791 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1340 0.0000 4 6 3.5021 1.1622 0.0005 5 6 4.4129 2.2083 0.0002 6 6 5.6874 1.6575 0.0005 7 7 5.5871 0.3484 0.0004 8 7 4.2316 -0.0006 0.0005 9 6 3.5943 -1.2030 0.0063 10 6 2.2139 -1.2263 0.0001 11 6 1.4863 -2.5105 0.0002 12 8 0.2758 -2.5234 0.1128 13 7 2.1639 -3.6689 -0.1247 14 6 1.4417 -4.9435 -0.1252 15 1 0.4548 -4.8242 -0.5722 16 6 1.3285 -5.5069 1.3127 17 6 2.0908 -6.8688 1.2294 18 1 2.4467 -7.2705 2.1781 19 6 1.1636 -7.8021 0.3937 20 6 1.2767 -7.2374 -1.0369 21 6 2.2569 -6.0361 -0.8793 22 1 2.7596 -5.7043 -1.7878 23 7 3.1519 -6.5373 0.2189 24 6 4.5145 -6.6596 0.2782 25 1 5.1309 -6.2109 -0.4868 26 6 5.1036 -7.3602 1.3217 27 7 4.3546 -8.0416 2.1626 28 14 6.9596 -7.3362 1.5326 29 1 7.5487 -8.5265 0.8684 30 1 7.2938 -7.3605 2.9793 31 1 7.5116 -6.1024 0.9177 32 1 -0.3634 -0.1174 1.0209 33 1 -0.3633 0.9429 -0.4087 34 1 -0.3634 -0.8254 -0.6123 35 1 4.1738 3.2614 -0.0002 36 1 6.6119 2.2157 0.0007 37 1 4.1590 -2.1235 0.0114 38 1 3.1296 -3.6586 -0.2142 39 1 1.8092 -4.8378 2.0262 40 1 0.2844 -5.6689 1.5805 41 1 1.5230 -8.8306 0.4275 42 1 0.1361 -7.7436 0.7524 43 1 0.3050 -6.8953 -1.3929 44 1 1.6920 -7.9863 -1.7112 45 1 4.7663 -8.5308 2.8921 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098126790.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:10 Heat of formation + Delta-G solvation = 135.342708 kcal Electronic energy + Delta-G solvation = -29899.699344 eV Core-core repulsion = 25920.948651 eV Total energy + Delta-G solvation = -3978.750693 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -42.54614 -40.18255 -38.96149 -37.70654 -34.82757 -33.81019 -32.62549 -32.16092 -30.10664 -29.21270 -28.84782 -28.22884 -27.61486 -24.92785 -24.27740 -22.93459 -21.85191 -21.51011 -20.40188 -19.93661 -18.87519 -18.71553 -17.69934 -17.06644 -16.53366 -16.37776 -15.79497 -15.43062 -14.94541 -14.76717 -14.42751 -14.34824 -14.04317 -13.81288 -13.58888 -13.48047 -13.05704 -13.01472 -12.32569 -12.11787 -11.96099 -11.91823 -11.53500 -11.51760 -11.31212 -11.23047 -11.03473 -10.93766 -10.62480 -10.43144 -10.25630 -10.15641 -10.05794 -9.81220 -9.65052 -9.48076 -9.22931 -8.93219 -8.71854 -8.14976 -7.01720 -5.87546 -3.24425 0.12951 0.45879 1.74301 2.26150 2.79905 3.15120 3.30163 3.36192 3.36664 3.38113 3.59325 3.86330 3.95626 4.32956 4.56200 4.70737 4.93987 5.01829 5.03696 5.18620 5.25403 5.48552 5.54322 5.55681 5.56529 5.63276 5.72628 5.79778 5.95607 5.96701 6.01209 6.05713 6.13508 6.21740 6.26629 6.32519 6.36992 6.51416 6.63591 6.72095 6.85496 6.95783 7.14629 7.22394 7.39142 7.42288 7.65569 7.68459 8.01992 8.24794 8.94721 9.59877 10.42507 11.24252 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010922 B = 0.003823 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.007695 B = 7322.881195 C = 9435.690802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.257 3.743 3 N -0.477 5.477 4 C 0.268 3.732 5 C -0.271 4.271 6 C 0.098 3.902 7 N -0.309 5.309 8 N -0.318 5.318 9 C 0.214 3.786 10 C -0.233 4.233 11 C 0.573 3.427 12 O -0.530 6.530 13 N -0.699 5.699 14 C 0.130 3.870 15 H 0.087 0.913 16 C -0.146 4.146 17 C 0.160 3.840 18 H 0.140 0.860 19 C -0.133 4.133 20 C -0.127 4.127 21 C 0.123 3.877 22 H 0.088 0.912 23 N -0.590 5.590 24 C -0.223 4.223 25 H 0.077 0.923 26 C -0.004 4.004 27 N -0.913 5.913 28 Si 0.910 3.090 29 H -0.289 1.289 30 H -0.290 1.290 31 H -0.281 1.281 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.112 0.888 35 H 0.163 0.837 36 H 0.201 0.799 37 H 0.187 0.813 38 H 0.400 0.600 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.048 0.952 43 H 0.052 0.948 44 H 0.058 0.942 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.802 14.391 -4.865 15.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.092 3.908 3 N -0.190 5.190 4 C 0.042 3.958 5 C -0.301 4.301 6 C -0.082 4.082 7 N -0.132 5.132 8 N -0.088 5.088 9 C 0.076 3.924 10 C -0.243 4.243 11 C 0.358 3.642 12 O -0.408 6.408 13 N -0.348 5.348 14 C 0.024 3.976 15 H 0.105 0.895 16 C -0.187 4.187 17 C 0.054 3.946 18 H 0.157 0.843 19 C -0.173 4.173 20 C -0.167 4.167 21 C 0.014 3.986 22 H 0.106 0.894 23 N -0.311 5.311 24 C -0.351 4.351 25 H 0.095 0.905 26 C -0.201 4.201 27 N -0.559 5.559 28 Si 0.740 3.260 29 H -0.216 1.216 30 H -0.216 1.216 31 H -0.206 1.206 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.130 0.870 35 H 0.181 0.819 36 H 0.217 0.783 37 H 0.204 0.796 38 H 0.235 0.765 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.856 14.113 -4.647 15.632 hybrid contribution 1.687 -0.078 0.137 1.695 sum -3.169 14.035 -4.509 15.078 Atomic orbital electron populations 1.21117 0.85737 1.04558 1.05127 1.22017 0.98244 0.85508 0.84994 1.68103 1.03682 1.28140 1.19040 1.20891 0.88294 0.87026 0.99544 1.20995 0.89576 0.98741 1.20807 1.23965 0.99055 0.90998 0.94185 1.78002 0.88912 1.15522 1.30783 1.47126 1.07850 1.06046 1.47749 1.22648 0.92034 0.88896 0.88816 1.20767 0.91567 0.97503 1.14500 1.17336 0.86994 0.82448 0.77449 1.90733 1.12872 1.86606 1.50637 1.46011 1.11046 1.05754 1.71974 1.22745 0.95293 0.81398 0.98137 0.89536 1.23566 0.99592 1.00455 0.95061 1.23508 0.85256 0.89963 0.95899 0.84265 1.22879 0.98315 1.00639 0.95444 1.22746 0.97796 0.98253 0.97883 1.23192 0.90936 0.92307 0.92169 0.89368 1.46574 1.01035 1.73155 1.10337 1.18946 0.79516 1.28053 1.08555 0.90546 1.24763 0.97808 0.98550 0.98984 1.69671 1.33456 1.34461 1.18300 0.86143 0.84896 0.77728 0.77212 1.21598 1.21616 1.20631 0.88864 0.90621 0.87025 0.81896 0.78278 0.79600 0.76506 0.92287 0.92360 0.92281 0.93372 0.92980 0.92366 0.93506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 8.92 36.00 0.32 -0.87 16 2 C 0.26 3.35 6.87 -81.73 -0.56 2.79 16 3 N -0.48 -6.61 10.37 -8.17 -0.08 -6.69 16 4 C 0.27 3.72 7.91 -155.32 -1.23 2.50 16 5 C -0.27 -3.08 10.91 -39.18 -0.43 -3.51 16 6 C 0.10 1.03 11.95 -17.56 -0.21 0.82 16 7 N -0.31 -4.25 12.65 30.49 0.39 -3.86 16 8 N -0.32 -4.46 3.88 -11.67 -0.05 -4.50 16 9 C 0.21 2.76 10.82 -15.73 -0.17 2.59 16 10 C -0.23 -3.07 5.88 -104.88 -0.62 -3.68 16 11 C 0.57 8.26 7.71 -12.44 -0.10 8.16 16 12 O -0.53 -8.47 13.09 5.29 0.07 -8.40 16 13 N -0.70 -10.34 5.02 -52.44 -0.26 -10.60 16 14 C 0.13 2.13 2.80 -65.46 -0.18 1.95 16 15 H 0.09 1.39 7.23 -51.93 -0.38 1.02 16 16 C -0.15 -2.67 6.25 -23.98 -0.15 -2.82 16 17 C 0.16 3.41 4.65 -62.55 -0.29 3.12 16 18 H 0.14 3.45 5.90 -51.93 -0.31 3.14 16 19 C -0.13 -2.51 6.41 -24.57 -0.16 -2.67 16 20 C -0.13 -2.16 6.41 -24.58 -0.16 -2.32 16 21 C 0.12 2.19 5.06 -62.81 -0.32 1.87 16 22 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 23 N -0.59 -13.08 2.97 -145.55 -0.43 -13.51 16 24 C -0.22 -5.55 10.56 -15.06 -0.16 -5.71 16 25 H 0.08 1.83 7.84 -52.48 -0.41 1.42 16 26 C 0.00 -0.10 5.47 -17.43 -0.10 -0.20 16 27 N -0.91 -24.81 10.74 55.49 0.60 -24.22 16 28 Si 0.91 20.84 29.56 -169.99 -5.03 15.81 16 29 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 30 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 31 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.11 1.30 5.92 -51.93 -0.31 1.00 16 35 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.20 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.19 2.09 6.50 -52.49 -0.34 1.75 16 38 H 0.40 5.67 6.77 -40.82 -0.28 5.39 16 39 H 0.06 1.15 7.98 -51.93 -0.41 0.73 16 40 H 0.06 0.99 7.83 -51.93 -0.41 0.58 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.05 0.80 7.83 -51.93 -0.41 0.39 16 43 H 0.05 0.77 7.82 -51.93 -0.41 0.36 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.25 6.80 8.31 -40.82 -0.34 6.47 16 LS Contribution 364.93 15.07 5.50 5.50 Total: -1.00 -30.11 364.93 -9.55 -39.66 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -5.75 Total: 8.81 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: -4.50 Total: 2.01 kcal Atomic # 7 Polarization: -63.54 SS G_CDS: 0.16 Total: -63.39 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.07 Total: -8.40 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.11 -9.55 -39.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098126790.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.998 kcal (2) G-P(sol) polarization free energy of solvation -30.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds