Wall clock time and date at job start Sat Apr 11 2020 06:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39965 * 119.94782 * 2 1 4 4 C 1.35756 * 119.35293 * 180.02562 * 3 2 1 5 5 N 1.36312 * 119.15646 * 359.97438 * 4 3 2 6 6 N 1.39909 * 132.16292 * 179.97438 * 5 4 3 7 7 C 1.30691 * 109.52157 * 179.71539 * 6 5 4 8 8 C 1.40642 * 108.72694 * 0.45284 * 7 6 5 9 9 C 1.46591 * 126.54286 * 179.81770 * 8 7 6 10 10 O 1.21713 * 120.00304 * 179.68857 * 9 8 7 11 11 N 1.34776 * 119.99424 * 359.68660 * 9 8 7 12 12 C 1.46501 * 119.99778 * 180.02562 * 11 9 8 13 13 H 1.09004 * 110.55758 * 32.10046 * 12 11 9 14 14 C 1.54849 * 110.76238 * 269.10519 * 12 11 9 15 15 C 1.56308 * 103.40581 * 241.31903 * 14 12 11 16 16 H 1.09001 * 115.71532 * 158.92829 * 15 14 12 17 17 C 1.55844 * 105.08030 * 288.42268 * 15 14 12 18 18 C 1.54226 * 103.56206 * 71.68886 * 17 15 14 19 19 C 1.55846 * 103.56611 * 0.02562 * 18 17 15 20 20 H 1.08998 * 116.12601 * 159.06419 * 19 18 17 21 21 N 1.50230 * 101.04997 * 32.84667 * 19 18 17 22 22 C 1.36936 * 130.83719 * 126.00042 * 21 19 18 23 23 H 1.08002 * 119.99810 * 10.36054 * 22 21 19 24 24 C 1.38810 * 120.00256 * 190.36612 * 22 21 19 25 25 N 1.31623 * 120.00063 * 200.96992 * 24 22 21 26 26 Si 1.86797 * 119.99924 * 20.96416 * 24 22 21 27 27 H 1.48504 * 109.46962 * 270.00157 * 26 24 22 28 28 H 1.48504 * 109.46990 * 150.00352 * 26 24 22 29 29 H 1.48500 * 109.47287 * 30.00424 * 26 24 22 30 30 C 1.36595 * 119.73217 * 0.02562 * 5 4 3 31 31 N 1.31497 * 119.94246 * 180.02562 * 2 1 3 32 32 H 1.09007 * 109.46834 * 89.99680 * 1 2 3 33 33 H 1.08994 * 109.47798 * 210.00096 * 1 2 3 34 34 H 1.09003 * 109.47075 * 330.00443 * 1 2 3 35 35 H 1.07996 * 120.32253 * 0.03755 * 3 2 1 36 36 H 1.08002 * 120.41860 * 179.97438 * 4 3 2 37 37 H 1.07995 * 125.64238 * 180.28901 * 7 6 5 38 38 H 0.97000 * 120.00129 * 0.02562 * 11 9 8 39 39 H 1.09001 * 110.62531 * 359.93386 * 14 12 11 40 40 H 1.08999 * 110.62811 * 122.95390 * 14 12 11 41 41 H 1.08993 * 110.62534 * 190.09196 * 17 15 14 42 42 H 1.08995 * 110.62888 * 312.95963 * 17 15 14 43 43 H 1.08999 * 110.64800 * 241.43268 * 18 17 15 44 44 H 1.09001 * 110.49745 * 118.49405 * 18 17 15 45 45 H 0.97000 * 119.99970 * 354.92181 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2058 1.2128 0.0000 4 6 3.5633 1.1987 -0.0005 5 7 4.2150 0.0014 -0.0005 6 7 5.5748 -0.3276 -0.0014 7 6 5.7096 -1.6275 0.0051 8 6 4.4314 -2.2141 0.0002 9 6 4.1292 -3.6485 0.0011 10 8 2.9724 -4.0268 0.0021 11 7 5.1326 -4.5484 0.0007 12 6 4.8307 -5.9820 0.0009 13 1 3.9055 -6.1784 -0.5410 14 6 4.7404 -6.5236 1.4488 15 6 5.8798 -7.5921 1.5077 16 1 6.2376 -7.8475 2.5051 17 6 5.3677 -8.7792 0.6375 18 6 5.4566 -8.2361 -0.8033 19 6 6.0114 -6.7919 -0.6160 20 1 6.4846 -6.3425 -1.4890 21 7 6.8939 -6.9760 0.5858 22 6 8.2166 -6.6791 0.7793 23 1 8.7495 -6.0872 0.0499 24 6 8.8725 -7.1389 1.9130 25 7 9.9748 -6.5467 2.3213 26 14 8.1907 -8.5981 2.8591 27 1 7.2499 -8.1159 3.9021 28 1 9.3072 -9.3361 3.5027 29 1 7.4731 -9.5023 1.9250 30 6 3.4971 -1.1607 -0.0005 31 7 2.1634 -1.1395 -0.0005 32 1 -0.3633 0.0001 -1.0277 33 1 -0.3634 -0.8899 0.5138 34 1 -0.3633 0.8900 0.5138 35 1 1.6702 2.1506 0.0006 36 1 4.1197 2.1243 -0.0010 37 1 6.6475 -2.1629 0.0106 38 1 6.0545 -4.2469 0.0002 39 1 4.9214 -5.7259 2.1692 40 1 3.7705 -6.9887 1.6250 41 1 6.0127 -9.6496 0.7577 42 1 4.3379 -9.0274 0.8942 43 1 4.4702 -8.2119 -1.2665 44 1 6.1456 -8.8378 -1.3961 45 1 10.3694 -5.8372 1.7904 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098234491.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:22 Heat of formation + Delta-G solvation = 138.597074 kcal Electronic energy + Delta-G solvation = -29652.104374 eV Core-core repulsion = 25673.494801 eV Total energy + Delta-G solvation = -3978.609573 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.64483 -39.85798 -38.76982 -37.98924 -34.40312 -33.75312 -32.63909 -32.41819 -30.16599 -29.48482 -29.02254 -28.67245 -27.89099 -24.54434 -23.60569 -23.14728 -22.60638 -21.33183 -20.05105 -19.85979 -19.16365 -18.51015 -17.43622 -17.35728 -16.71171 -16.44427 -15.98418 -15.68918 -15.18107 -14.58342 -14.45876 -14.20092 -13.98541 -13.84474 -13.57721 -13.37731 -13.25507 -13.04546 -12.70138 -12.61901 -12.12295 -11.77624 -11.67923 -11.64706 -11.50086 -11.30153 -11.27379 -10.81385 -10.61346 -10.44302 -10.03829 -9.89196 -9.77379 -9.64646 -9.43636 -9.29161 -9.19534 -8.68708 -8.45444 -8.08744 -7.19803 -6.29476 -3.17485 0.13367 0.51571 1.70478 2.06323 2.93290 3.39541 3.43924 3.52246 3.55516 3.68288 3.79622 3.88822 3.99687 4.41634 4.60504 4.70673 4.72992 4.83530 4.91095 5.03155 5.14392 5.20785 5.24530 5.41774 5.44297 5.46854 5.55432 5.71257 5.75905 5.77704 5.90781 5.98264 6.02212 6.04949 6.13404 6.19177 6.30201 6.33642 6.51028 6.60494 6.72081 6.85889 6.94738 7.09736 7.17354 7.41248 7.43758 8.09807 8.27110 8.77138 8.99235 9.54294 10.34691 11.19467 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017445 B = 0.003025 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.663812 B = 9252.582564 C =10195.387459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.204 3.796 3 C -0.223 4.223 4 C 0.168 3.832 5 N -0.313 5.313 6 N -0.312 5.312 7 C 0.133 3.867 8 C -0.282 4.282 9 C 0.592 3.408 10 O -0.541 6.541 11 N -0.707 5.707 12 C 0.137 3.863 13 H 0.086 0.914 14 C -0.137 4.137 15 C 0.118 3.882 16 H 0.094 0.906 17 C -0.139 4.139 18 C -0.127 4.127 19 C 0.130 3.870 20 H 0.094 0.906 21 N -0.604 5.604 22 C -0.310 4.310 23 H 0.078 0.922 24 C -0.022 4.022 25 N -0.928 5.928 26 Si 1.058 2.942 27 H -0.296 1.296 28 H -0.303 1.303 29 H -0.275 1.275 30 C 0.320 3.680 31 N -0.442 5.442 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.169 0.831 36 H 0.183 0.817 37 H 0.208 0.792 38 H 0.401 0.599 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.227 14.986 -6.371 23.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.042 3.958 3 C -0.247 4.247 4 C 0.032 3.968 5 N -0.082 5.082 6 N -0.133 5.133 7 C -0.048 4.048 8 C -0.298 4.298 9 C 0.379 3.621 10 O -0.419 6.419 11 N -0.357 5.357 12 C 0.030 3.970 13 H 0.104 0.896 14 C -0.177 4.177 15 C 0.012 3.988 16 H 0.111 0.889 17 C -0.178 4.178 18 C -0.167 4.167 19 C 0.021 3.979 20 H 0.112 0.888 21 N -0.327 5.327 22 C -0.437 4.437 23 H 0.096 0.904 24 C -0.222 4.222 25 N -0.569 5.569 26 Si 0.893 3.107 27 H -0.225 1.225 28 H -0.231 1.231 29 H -0.201 1.201 30 C 0.088 3.912 31 N -0.154 5.154 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.187 0.813 36 H 0.200 0.800 37 H 0.224 0.776 38 H 0.235 0.765 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.114 13.973 -5.017 22.656 hybrid contribution 0.441 1.219 -1.260 1.808 sum -16.673 15.193 -6.277 23.414 Atomic orbital electron populations 1.20845 0.86794 1.04666 1.04194 1.22104 0.98240 0.87443 0.88052 1.21741 0.92435 1.01337 1.09161 1.22105 0.92687 0.88538 0.93464 1.47068 1.07874 1.06373 1.46845 1.77619 0.88443 1.15996 1.31290 1.24276 0.98640 0.90548 0.91368 1.19577 0.90383 0.93602 1.26282 1.16753 0.85316 0.83529 0.76508 1.90792 1.19723 1.80533 1.50881 1.45721 1.08985 1.06284 1.74696 1.22500 0.98853 0.78786 0.96854 0.89615 1.23411 0.98202 0.99451 0.96684 1.23310 0.88852 0.92134 0.94542 0.88880 1.23051 0.99768 0.99026 0.95995 1.22764 0.99601 0.97627 0.96714 1.23168 0.89874 0.93520 0.91308 0.88811 1.46920 1.06058 1.72280 1.07473 1.20041 0.83830 1.30343 1.09444 0.90403 1.25728 0.97208 1.02489 0.96756 1.70931 1.23392 1.25958 1.36615 0.83914 0.73963 0.77293 0.75553 1.22537 1.23121 1.20100 1.20343 0.87842 0.86250 0.96732 1.68178 1.03745 1.28215 1.15263 0.89058 0.89245 0.89616 0.81313 0.79969 0.77603 0.76483 0.91709 0.91932 0.91611 0.92315 0.92384 0.91960 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.19 36.01 0.37 -0.24 16 2 C 0.20 1.93 6.83 -82.09 -0.56 1.37 16 3 C -0.22 -1.42 9.72 -39.82 -0.39 -1.80 16 4 C 0.17 1.36 11.29 -16.45 -0.19 1.18 16 5 N -0.31 -4.07 3.86 -11.97 -0.05 -4.11 16 6 N -0.31 -4.40 12.58 30.76 0.39 -4.01 16 7 C 0.13 1.89 11.44 -17.13 -0.20 1.69 16 8 C -0.28 -4.67 6.17 -104.65 -0.65 -5.31 16 9 C 0.59 10.99 7.78 -12.89 -0.10 10.89 16 10 O -0.54 -11.60 16.38 5.18 0.08 -11.52 16 11 N -0.71 -12.47 5.07 -52.69 -0.27 -12.74 16 12 C 0.14 2.49 2.80 -65.40 -0.18 2.31 16 13 H 0.09 1.56 7.22 -51.93 -0.38 1.18 16 14 C -0.14 -2.64 6.25 -23.98 -0.15 -2.79 16 15 C 0.12 2.49 3.61 -62.53 -0.23 2.27 16 16 H 0.09 2.11 3.45 -51.93 -0.18 1.93 16 17 C -0.14 -2.54 6.20 -24.57 -0.15 -2.69 16 18 C -0.13 -2.17 6.41 -24.57 -0.16 -2.33 16 19 C 0.13 2.45 5.06 -62.77 -0.32 2.13 16 20 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 21 N -0.60 -13.82 2.83 -145.49 -0.41 -14.23 16 22 C -0.31 -8.33 10.81 -15.06 -0.16 -8.50 16 23 H 0.08 2.19 8.06 -52.49 -0.42 1.76 16 24 C -0.02 -0.63 5.50 -17.43 -0.10 -0.72 16 25 N -0.93 -28.46 13.70 55.49 0.76 -27.70 16 26 Si 1.06 26.18 25.01 -169.99 -4.25 21.93 16 27 H -0.30 -7.09 6.60 56.52 0.37 -6.72 16 28 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 29 H -0.27 -6.24 4.94 56.52 0.28 -5.96 16 30 C 0.32 5.00 7.74 -155.83 -1.21 3.79 16 31 N -0.44 -6.47 10.18 -8.24 -0.08 -6.55 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.22 8.09 -51.93 -0.42 -0.20 16 35 H 0.17 0.31 8.06 -52.49 -0.42 -0.12 16 36 H 0.18 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.21 2.41 7.46 -52.49 -0.39 2.02 16 38 H 0.40 6.77 7.58 -40.82 -0.31 6.46 16 39 H 0.06 1.34 7.98 -51.93 -0.41 0.93 16 40 H 0.06 1.10 7.83 -51.93 -0.41 0.69 16 41 H 0.07 1.25 6.50 -51.93 -0.34 0.91 16 42 H 0.06 0.93 7.83 -51.93 -0.41 0.52 16 43 H 0.06 0.86 7.82 -51.93 -0.41 0.45 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.26 7.88 8.73 -40.82 -0.36 7.52 16 LS Contribution 363.32 15.07 5.48 5.48 Total: -1.00 -37.07 363.32 -8.62 -45.69 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -5.91 Total: 6.54 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -4.36 Total: 1.23 kcal Atomic # 7 Polarization: -69.68 SS G_CDS: 0.34 Total: -69.35 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.08 Total: -11.52 kcal Atomic # 14 Polarization: 26.18 SS G_CDS: -4.25 Total: 21.93 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.07 -8.62 -45.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098234491.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.287 kcal (2) G-P(sol) polarization free energy of solvation -37.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds