Wall clock time and date at job start Sat Apr 11 2020 06:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33721 * 126.13042 * 2 1 4 4 H 0.96997 * 124.96826 * 0.02562 * 3 2 1 5 5 N 1.39876 * 110.05514 * 180.02562 * 3 2 1 6 6 C 1.31908 * 109.17953 * 359.97438 * 5 3 2 7 7 N 1.34426 * 134.12784 * 179.97438 * 6 5 3 8 8 C 1.30504 * 121.55900 * 179.71228 * 7 6 5 9 9 C 1.40810 * 122.37346 * 0.59821 * 8 7 6 10 10 C 1.47525 * 119.91483 * 179.70574 * 9 8 7 11 11 O 1.21598 * 119.99848 * 179.72240 * 10 9 8 12 12 N 1.34774 * 119.99743 * 359.72491 * 10 9 8 13 13 C 1.46507 * 119.99589 * 179.97438 * 12 10 9 14 14 H 1.09000 * 110.68350 * 32.01691 * 13 12 10 15 15 C 1.55873 * 111.60239 * 269.01876 * 13 12 10 16 16 C 1.55849 * 103.52949 * 242.19618 * 15 13 12 17 17 H 1.08998 * 115.56396 * 158.20764 * 16 15 13 18 18 C 1.55841 * 105.73762 * 287.38784 * 16 15 13 19 19 C 1.55872 * 102.97598 * 71.13107 * 18 16 15 20 20 C 1.55837 * 103.52820 * 0.87997 * 19 18 16 21 21 H 1.09002 * 115.56222 * 158.20615 * 20 19 18 22 22 N 1.50237 * 101.05245 * 32.33422 * 20 19 18 23 23 C 1.36942 * 130.84274 * 126.05241 * 22 20 19 24 24 H 1.07997 * 119.99519 * 5.50619 * 23 22 20 25 25 C 1.38812 * 119.99950 * 185.51085 * 23 22 20 26 26 N 1.31617 * 120.00384 * 9.34370 * 25 23 22 27 27 Si 1.86803 * 119.99626 * 189.34194 * 25 23 22 28 28 H 1.48500 * 109.46985 * 94.01426 * 27 25 23 29 29 H 1.48504 * 109.46788 * 214.01321 * 27 25 23 30 30 H 1.48496 * 109.47172 * 334.01019 * 27 25 23 31 31 C 1.38871 * 120.16944 * 359.43285 * 9 8 7 32 32 C 1.38545 * 126.12226 * 180.02562 * 2 1 3 33 33 H 1.09005 * 109.47063 * 269.97706 * 1 2 3 34 34 H 1.08997 * 109.46695 * 29.96809 * 1 2 3 35 35 H 1.08998 * 109.47374 * 149.97238 * 1 2 3 36 36 H 1.08001 * 118.81293 * 180.30378 * 8 7 6 37 37 H 0.97000 * 120.00529 * 359.97438 * 12 10 9 38 38 H 1.08998 * 111.10227 * 123.42889 * 15 13 12 39 39 H 1.08999 * 110.07120 * 0.46176 * 15 13 12 40 40 H 1.09000 * 110.62549 * 190.50208 * 18 16 15 41 41 H 1.09000 * 110.62606 * 313.51802 * 18 16 15 42 42 H 1.08997 * 111.10384 * 242.11379 * 19 18 16 43 43 H 1.09001 * 110.06817 * 119.15510 * 19 18 16 44 44 H 0.96995 * 120.00188 * 179.97438 * 26 25 23 45 45 H 1.07994 * 121.05101 * 180.23446 * 31 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0800 0.0000 4 1 1.9812 1.9977 0.0004 5 7 3.6395 0.6927 -0.0006 6 6 3.7109 -0.6244 -0.0004 7 7 4.7251 -1.5068 -0.0012 8 6 4.5105 -2.7940 0.0048 9 6 3.2135 -3.3422 0.0001 10 6 3.0336 -4.8064 0.0008 11 8 1.9143 -5.2815 0.0018 12 7 4.1100 -5.6176 0.0003 13 6 3.9313 -7.0717 0.0016 14 1 3.0256 -7.3488 -0.5380 15 6 3.8873 -7.6432 1.4511 16 6 5.1223 -8.5923 1.5064 17 1 5.5021 -8.8122 2.5041 18 6 4.7411 -9.8327 0.6434 19 6 4.7630 -9.2684 -0.8094 20 6 5.1757 -7.7782 -0.6155 21 1 5.6069 -7.2919 -1.4905 22 7 6.0729 -7.8817 0.5851 23 6 7.3606 -7.4584 0.7801 24 1 7.8597 -6.8789 0.0176 25 6 8.0243 -7.7743 1.9576 26 7 7.4913 -8.6292 2.8045 27 14 9.6741 -6.9861 2.3401 28 1 9.4630 -5.7766 3.1754 29 1 10.5261 -7.9539 3.0768 30 1 10.3447 -6.6013 1.0723 31 6 2.1033 -2.5080 0.0005 32 6 2.3237 -1.1191 -0.0005 33 1 -0.3633 -0.0004 1.0277 34 1 -0.3632 0.8903 -0.5133 35 1 -0.3634 -0.8897 -0.5142 36 1 5.3584 -3.4630 0.0089 37 1 5.0029 -5.2387 -0.0008 38 1 2.9668 -8.2003 1.6255 39 1 3.9914 -6.8352 2.1751 40 1 5.4716 -10.6310 0.7749 41 1 3.7396 -10.1820 0.8945 42 1 3.7785 -9.3370 -1.2719 43 1 5.5061 -9.7983 -1.4053 44 1 7.9552 -8.8503 3.6271 45 1 1.1022 -2.9131 0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098400604.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:28 Heat of formation + Delta-G solvation = 116.585195 kcal Electronic energy + Delta-G solvation = -29364.939090 eV Core-core repulsion = 25385.375010 eV Total energy + Delta-G solvation = -3979.564080 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.87116 -39.89611 -38.70009 -37.57955 -33.89627 -33.70020 -32.50055 -31.78632 -31.13876 -29.07149 -28.85202 -28.14376 -27.21304 -25.02016 -24.18892 -23.59770 -21.45564 -20.63927 -19.98850 -19.76420 -18.74110 -18.30464 -17.68257 -17.01166 -16.92390 -16.06481 -15.86607 -15.21957 -14.83353 -14.67368 -14.49350 -13.93710 -13.86518 -13.69987 -13.66474 -13.43275 -13.13408 -12.98367 -12.68301 -12.58244 -12.01700 -11.79962 -11.41109 -11.22889 -11.11733 -10.91179 -10.85876 -10.77667 -10.52532 -10.31625 -10.05505 -9.99154 -9.87378 -9.40063 -9.36824 -9.22629 -9.11235 -8.85530 -8.55089 -8.19360 -6.91900 -5.74931 -3.10865 0.07671 1.08673 1.94997 2.10587 3.11705 3.40329 3.42950 3.46069 3.47655 3.70533 3.87959 3.89184 4.29623 4.44017 4.53928 4.69831 4.83337 4.94064 4.96662 5.11838 5.17445 5.23159 5.36726 5.40802 5.65418 5.70233 5.87568 5.91572 5.94695 6.04391 6.13754 6.18617 6.24832 6.29787 6.45428 6.49606 6.56683 6.61816 6.76143 6.83604 6.97286 7.10399 7.12485 7.34356 7.50402 7.79620 7.82438 7.96278 8.15175 8.55916 9.07370 9.72222 10.54006 11.36109 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013425 B = 0.003097 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.230460 B = 9037.804281 C =10611.136755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.150 3.850 3 N -0.412 5.412 4 H 0.447 0.553 5 N -0.293 5.293 6 C 0.285 3.715 7 N -0.476 5.476 8 C 0.226 3.774 9 C -0.235 4.235 10 C 0.566 3.434 11 O -0.553 6.553 12 N -0.699 5.699 13 C 0.130 3.870 14 H 0.082 0.918 15 C -0.144 4.144 16 C 0.156 3.844 17 H 0.144 0.856 18 C -0.134 4.134 19 C -0.128 4.128 20 C 0.124 3.876 21 H 0.088 0.912 22 N -0.590 5.590 23 C -0.217 4.217 24 H 0.079 0.921 25 C -0.008 4.008 26 N -0.916 5.916 27 Si 0.911 3.089 28 H -0.289 1.289 29 H -0.292 1.292 30 H -0.281 1.281 31 C 0.083 3.917 32 C -0.272 4.272 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.171 0.829 37 H 0.402 0.598 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.046 0.954 42 H 0.052 0.948 43 H 0.056 0.944 44 H 0.253 0.747 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.634 14.102 -6.247 21.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.007 3.993 3 N -0.112 5.112 4 H 0.292 0.708 5 N -0.124 5.124 6 C 0.022 3.978 7 N -0.188 5.188 8 C 0.040 3.960 9 C -0.243 4.243 10 C 0.352 3.648 11 O -0.433 6.433 12 N -0.348 5.348 13 C 0.023 3.977 14 H 0.100 0.900 15 C -0.185 4.185 16 C 0.050 3.950 17 H 0.161 0.839 18 C -0.173 4.173 19 C -0.168 4.168 20 C 0.015 3.985 21 H 0.106 0.894 22 N -0.311 5.311 23 C -0.345 4.345 24 H 0.097 0.903 25 C -0.204 4.204 26 N -0.563 5.563 27 Si 0.741 3.259 28 H -0.216 1.216 29 H -0.219 1.219 30 H -0.206 1.206 31 C 0.054 3.946 32 C -0.284 4.284 33 H 0.113 0.887 34 H 0.100 0.900 35 H 0.116 0.884 36 H 0.187 0.813 37 H 0.238 0.762 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -14.548 15.423 -6.084 22.058 hybrid contribution -0.046 0.039 0.264 0.271 sum -14.594 15.462 -5.821 22.044 Atomic orbital electron populations 1.20690 0.85533 1.05148 1.04644 1.21412 0.94647 0.87179 0.96108 1.46405 1.04616 1.08909 1.51293 0.70778 1.77776 0.91662 1.10423 1.32509 1.21454 0.88716 0.91466 0.96138 1.67411 1.31396 1.01794 1.18170 1.23184 0.95709 0.90384 0.86723 1.20631 0.94816 0.94812 1.14028 1.17809 0.85029 0.85340 0.76610 1.90733 1.24092 1.76811 1.51705 1.45887 1.08597 1.07370 1.72933 1.22767 0.99188 0.77775 0.97937 0.90004 1.23635 0.99383 1.00113 0.95332 1.23528 0.85780 0.88165 0.97550 0.83917 1.23175 0.98868 0.99831 0.95431 1.23035 0.99132 0.97061 0.97551 1.23164 0.89773 0.94038 0.91488 0.89424 1.46563 1.10043 1.66552 1.07990 1.19002 0.87307 1.26627 1.01561 0.90312 1.24701 0.98567 0.99277 0.97865 1.69614 1.39055 1.35523 1.12111 0.86117 0.83158 0.78522 0.78059 1.21618 1.21906 1.20647 1.21075 0.99460 0.89126 0.84913 1.20069 0.94828 0.94321 1.19196 0.88723 0.89983 0.88446 0.81253 0.76183 0.92556 0.92341 0.92250 0.93576 0.92984 0.92504 0.93623 0.83369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.33 10.45 36.00 0.38 0.04 16 2 C 0.15 1.19 7.28 -81.66 -0.59 0.60 16 3 N -0.41 -3.38 7.16 33.86 0.24 -3.14 16 4 H 0.45 1.70 8.96 -182.77 -1.64 0.07 16 5 N -0.29 -3.99 12.68 31.98 0.41 -3.58 16 6 C 0.28 4.25 8.60 -156.39 -1.35 2.90 16 7 N -0.48 -7.57 10.42 -11.02 -0.11 -7.68 16 8 C 0.23 3.20 10.64 -17.14 -0.18 3.02 16 9 C -0.24 -3.32 5.88 -104.91 -0.62 -3.93 16 10 C 0.57 9.16 7.76 -12.48 -0.10 9.06 16 11 O -0.55 -10.28 15.99 5.28 0.08 -10.19 16 12 N -0.70 -11.46 5.09 -51.90 -0.26 -11.73 16 13 C 0.13 2.31 2.84 -64.87 -0.18 2.13 16 14 H 0.08 1.46 7.26 -51.93 -0.38 1.08 16 15 C -0.14 -2.83 6.30 -23.68 -0.15 -2.98 16 16 C 0.16 3.47 4.62 -62.80 -0.29 3.18 16 17 H 0.14 3.66 5.73 -51.93 -0.30 3.36 16 18 C -0.13 -2.62 6.53 -23.68 -0.15 -2.77 16 19 C -0.13 -2.28 6.48 -23.68 -0.15 -2.43 16 20 C 0.12 2.34 5.01 -62.81 -0.31 2.02 16 21 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 22 N -0.59 -13.59 2.97 -145.82 -0.43 -14.02 16 23 C -0.22 -5.56 10.56 -15.06 -0.16 -5.72 16 24 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 25 C -0.01 -0.21 5.47 -17.43 -0.10 -0.30 16 26 N -0.92 -25.50 10.64 55.49 0.59 -24.91 16 27 Si 0.91 21.39 29.56 -169.99 -5.03 16.36 16 28 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 29 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 30 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 31 C 0.08 1.02 9.75 -38.45 -0.37 0.65 16 32 C -0.27 -3.25 6.26 -105.21 -0.66 -3.91 16 33 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 34 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 35 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.17 2.13 6.30 -52.49 -0.33 1.79 16 37 H 0.40 6.30 6.63 -40.82 -0.27 6.03 16 38 H 0.06 1.03 7.85 -51.93 -0.41 0.62 16 39 H 0.06 1.22 8.00 -51.93 -0.42 0.81 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.05 0.80 7.85 -51.93 -0.41 0.39 16 42 H 0.05 0.81 7.85 -51.93 -0.41 0.40 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 45 H 0.15 1.57 7.67 -52.49 -0.40 1.16 16 LS Contribution 369.40 15.07 5.57 5.57 Total: -1.00 -34.18 369.40 -10.98 -45.16 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -7.04 Total: 6.60 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -4.99 Total: 1.56 kcal Atomic # 7 Polarization: -65.49 SS G_CDS: 0.43 Total: -65.06 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.08 Total: -10.19 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.18 -10.98 -45.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098400604.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.748 kcal (2) G-P(sol) polarization free energy of solvation -34.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds