Wall clock time and date at job start Sat Apr 11 2020 06:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30700 * 125.63562 * 2 1 4 4 N 1.39900 * 109.51552 * 180.26804 * 3 2 1 5 5 C 1.36322 * 132.15793 * 179.71869 * 4 3 2 6 6 C 1.35752 * 119.15564 * 180.02562 * 5 4 3 7 7 C 1.39971 * 119.35601 * 359.97438 * 6 5 4 8 8 N 1.31495 * 120.10568 * 0.02562 * 7 6 5 9 9 C 1.33390 * 120.85503 * 359.96547 * 8 7 6 10 10 C 1.40644 * 125.63787 * 179.82332 * 2 1 3 11 11 C 1.46581 * 126.53688 * 0.02562 * 10 2 1 12 12 O 1.21714 * 120.00173 * 269.67859 * 11 10 2 13 13 N 1.34783 * 120.00193 * 89.68811 * 11 10 2 14 14 C 1.46501 * 120.00166 * 179.97438 * 13 11 10 15 15 H 1.09006 * 110.55616 * 36.44781 * 14 13 11 16 16 C 1.54852 * 110.62879 * 273.54624 * 14 13 11 17 17 C 1.55845 * 103.44155 * 241.51056 * 16 14 13 18 18 H 1.09005 * 115.55425 * 158.81275 * 17 16 14 19 19 C 1.55838 * 105.73881 * 287.98275 * 17 16 14 20 20 C 1.55489 * 103.32620 * 71.93262 * 19 17 16 21 21 C 1.55850 * 103.32120 * 359.97438 * 20 19 17 22 22 H 1.08997 * 116.12119 * 159.23913 * 21 20 19 23 23 N 1.50232 * 101.05359 * 32.93779 * 17 16 14 24 24 C 1.36938 * 130.84303 * 125.28070 * 23 17 16 25 25 H 1.07999 * 120.00325 * 180.02562 * 24 23 17 26 26 C 1.38815 * 119.99817 * 0.02793 * 24 23 17 27 27 N 1.31621 * 119.99673 * 359.71804 * 26 24 23 28 28 Si 1.86795 * 120.00115 * 179.97438 * 26 24 23 29 29 H 1.48502 * 109.47274 * 89.99913 * 28 26 24 30 30 H 1.48505 * 109.47015 * 209.99478 * 28 26 24 31 31 H 1.48498 * 109.47362 * 329.99904 * 28 26 24 32 32 H 1.09001 * 109.47219 * 270.17327 * 1 2 3 33 33 H 1.08994 * 109.47162 * 30.17748 * 1 2 3 34 34 H 1.09003 * 109.46922 * 150.17779 * 1 2 3 35 35 H 1.07997 * 120.42268 * 0.03284 * 5 4 3 36 36 H 1.07999 * 120.32499 * 180.02562 * 6 5 4 37 37 H 1.07997 * 119.94779 * 180.02562 * 7 6 5 38 38 H 0.97000 * 119.99877 * 359.97438 * 13 11 10 39 39 H 1.08998 * 110.62808 * 123.01648 * 16 14 13 40 40 H 1.09000 * 110.62324 * 359.97438 * 16 14 13 41 41 H 1.09007 * 110.62459 * 190.50219 * 19 17 16 42 42 H 1.09000 * 110.63159 * 313.52646 * 19 17 16 43 43 H 1.09001 * 110.60654 * 241.58545 * 20 19 17 44 44 H 1.08995 * 110.89591 * 118.54883 * 20 19 17 45 45 H 0.97000 * 120.00043 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2685 1.0623 0.0000 4 7 3.6125 0.6738 -0.0062 5 6 4.7720 1.3906 -0.0136 6 6 5.9579 0.7299 -0.0189 7 6 5.9637 -0.6698 -0.0162 8 7 4.8288 -1.3340 -0.0090 9 6 3.6600 -0.6912 -0.0035 10 6 2.3265 -1.1430 0.0035 11 6 1.8778 -2.5385 0.0073 12 8 1.6967 -3.1167 1.0629 13 7 1.6659 -3.1814 -1.1582 14 6 1.2179 -4.5763 -1.1544 15 1 0.5277 -4.7544 -0.3297 16 6 2.4288 -5.5379 -1.0698 17 6 2.3348 -6.3560 -2.3929 18 1 3.2599 -6.8319 -2.7182 19 6 1.1149 -7.3093 -2.2147 20 6 -0.1056 -6.3500 -2.3037 21 6 0.5506 -4.9534 -2.5223 22 1 -0.0893 -4.1852 -2.9564 23 7 1.7629 -5.3279 -3.3273 24 6 2.2117 -4.8690 -4.5369 25 1 1.6533 -4.1126 -5.0684 26 6 3.3843 -5.3760 -5.0799 27 7 4.0677 -6.2938 -4.4295 28 14 3.9962 -4.7505 -6.7302 29 1 4.8917 -3.5853 -6.5169 30 1 4.7451 -5.8303 -7.4220 31 1 2.8382 -4.3387 -7.5638 32 1 -0.3634 0.0031 1.0277 33 1 -0.3633 0.8883 -0.5166 34 1 -0.3633 -0.8916 -0.5111 35 1 4.7475 2.4703 -0.0151 36 1 6.8880 1.2789 -0.0244 37 1 6.9016 -1.2051 -0.0199 38 1 1.8099 -2.7206 -1.9995 39 1 2.3377 -6.1947 -0.2048 40 1 3.3625 -4.9769 -1.0311 41 1 1.0847 -8.0481 -3.0156 42 1 1.1485 -7.7981 -1.2410 43 1 -0.6742 -6.3654 -1.3738 44 1 -0.7444 -6.6109 -3.1474 45 1 4.8873 -6.6478 -4.8087 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098430964.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:33 Heat of formation + Delta-G solvation = 132.460901 kcal Electronic energy + Delta-G solvation = -30175.067084 eV Core-core repulsion = 26196.191426 eV Total energy + Delta-G solvation = -3978.875658 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.53335 -39.54905 -38.53782 -37.76106 -34.32487 -33.54789 -32.44428 -32.29997 -29.91824 -29.03956 -28.74797 -28.45140 -27.39448 -24.71569 -24.27481 -23.78157 -21.75900 -20.81098 -19.75488 -19.67167 -18.64975 -18.20962 -17.55703 -16.95817 -16.85913 -16.36449 -15.72523 -15.57056 -14.77446 -14.64224 -14.10233 -13.96140 -13.73908 -13.69393 -13.41107 -13.32215 -13.04729 -12.71479 -12.54799 -12.42308 -11.98879 -11.75981 -11.40877 -11.25443 -11.12053 -11.04124 -10.88985 -10.87592 -10.42158 -10.30484 -10.06453 -9.98048 -9.84851 -9.65156 -9.59237 -9.17846 -9.08337 -8.91792 -8.30380 -8.02257 -6.89262 -5.69852 -3.08522 0.29483 0.64813 1.78949 2.27602 2.98774 3.21011 3.37043 3.42148 3.44109 3.65553 3.74715 4.05222 4.14855 4.43976 4.60304 4.72867 4.91423 5.13192 5.18478 5.30474 5.38505 5.44217 5.46061 5.48637 5.69188 5.72513 5.77856 5.78972 5.93616 6.13018 6.13860 6.20896 6.22571 6.35289 6.40420 6.51559 6.57944 6.68157 6.82708 6.91808 7.04311 7.23140 7.23679 7.44562 7.47376 7.51739 7.84964 8.15761 8.23366 8.78927 9.11680 9.74905 10.56853 11.38989 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010263 B = 0.004171 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2727.531414 B = 6710.877248 C = 8073.700532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.155 3.845 3 N -0.315 5.315 4 N -0.307 5.307 5 C 0.164 3.836 6 C -0.226 4.226 7 C 0.184 3.816 8 N -0.452 5.452 9 C 0.297 3.703 10 C -0.270 4.270 11 C 0.604 3.396 12 O -0.546 6.546 13 N -0.693 5.693 14 C 0.129 3.871 15 H 0.077 0.923 16 C -0.141 4.141 17 C 0.153 3.847 18 H 0.151 0.849 19 C -0.137 4.137 20 C -0.125 4.125 21 C 0.126 3.874 22 H 0.087 0.913 23 N -0.591 5.591 24 C -0.212 4.212 25 H 0.077 0.923 26 C -0.010 4.010 27 N -0.918 5.918 28 Si 0.912 3.088 29 H -0.292 1.292 30 H -0.291 1.291 31 H -0.283 1.283 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.181 0.819 36 H 0.170 0.830 37 H 0.183 0.817 38 H 0.401 0.599 39 H 0.052 0.948 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.051 0.949 44 H 0.057 0.943 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.026 13.912 8.743 16.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.005 4.005 3 N -0.140 5.140 4 N -0.076 5.076 5 C 0.028 3.972 6 C -0.250 4.250 7 C 0.001 3.999 8 N -0.162 5.162 9 C 0.068 3.932 10 C -0.287 4.287 11 C 0.388 3.612 12 O -0.424 6.424 13 N -0.341 5.341 14 C 0.022 3.978 15 H 0.095 0.905 16 C -0.181 4.181 17 C 0.047 3.953 18 H 0.168 0.832 19 C -0.177 4.177 20 C -0.165 4.165 21 C 0.017 3.983 22 H 0.105 0.895 23 N -0.312 5.312 24 C -0.340 4.340 25 H 0.095 0.905 26 C -0.206 4.206 27 N -0.566 5.566 28 Si 0.744 3.256 29 H -0.219 1.219 30 H -0.217 1.217 31 H -0.208 1.208 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.198 0.802 36 H 0.187 0.813 37 H 0.200 0.800 38 H 0.235 0.765 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.288 13.828 9.208 16.616 hybrid contribution 0.773 0.716 -1.253 1.637 sum 0.485 14.544 7.955 16.585 Atomic orbital electron populations 1.20378 0.84905 1.04330 1.04127 1.22380 0.97247 0.88376 0.92535 1.77472 0.82425 1.21296 1.32788 1.46834 1.06608 1.07170 1.46938 1.22077 0.81737 0.99453 0.93889 1.21879 0.98113 0.96379 1.08612 1.23543 0.96662 0.91512 0.88197 1.68214 0.96153 1.37254 1.14597 1.20338 0.93836 0.80412 0.98657 1.19412 0.88787 0.95399 1.25072 1.16731 0.76774 0.83613 0.84081 1.90761 1.52393 1.67836 1.31390 1.45960 1.66677 1.13658 1.07839 1.22797 0.96604 0.79526 0.98841 0.90503 1.23424 0.97400 0.98179 0.99119 1.23730 0.97373 0.88367 0.85845 0.83189 1.23149 0.97306 0.98069 0.99161 1.22936 0.97316 0.96731 0.99534 1.23344 0.90209 0.94971 0.89752 0.89547 1.46536 1.22338 1.43689 1.18638 1.18979 1.04555 1.17182 0.93249 0.90549 1.24676 0.97703 0.99352 0.98843 1.69472 1.17556 1.31502 1.38082 0.86102 0.78504 0.77679 0.83365 1.21914 1.21683 1.20842 0.89254 0.89830 0.89435 0.80209 0.81281 0.79972 0.76454 0.92939 0.92007 0.92642 0.93314 0.92985 0.92431 0.93625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.26 36.01 0.37 -0.49 16 2 C 0.15 2.30 7.22 -82.17 -0.59 1.71 16 3 N -0.32 -4.61 12.58 33.80 0.43 -4.18 16 4 N -0.31 -4.28 3.86 -11.97 -0.05 -4.33 16 5 C 0.16 1.49 11.29 -16.45 -0.19 1.30 16 6 C -0.23 -1.64 10.05 -39.82 -0.40 -2.04 16 7 C 0.18 1.92 11.28 -17.05 -0.19 1.72 16 8 N -0.45 -7.25 10.47 -12.00 -0.13 -7.37 16 9 C 0.30 4.98 7.90 -155.83 -1.23 3.75 16 10 C -0.27 -4.76 5.91 -104.66 -0.62 -5.37 16 11 C 0.60 11.83 7.28 -12.89 -0.09 11.73 16 12 O -0.55 -12.27 16.83 5.18 0.09 -12.18 16 13 N -0.69 -13.26 5.10 -52.21 -0.27 -13.53 16 14 C 0.13 2.53 2.76 -64.90 -0.18 2.35 16 15 H 0.08 1.49 7.43 -51.93 -0.39 1.11 16 16 C -0.14 -3.06 6.24 -24.24 -0.15 -3.21 16 17 C 0.15 3.59 4.67 -62.81 -0.29 3.30 16 18 H 0.15 4.02 5.52 -51.93 -0.29 3.74 16 19 C -0.14 -2.77 6.49 -23.89 -0.16 -2.93 16 20 C -0.13 -2.30 6.50 -23.89 -0.16 -2.46 16 21 C 0.13 2.50 5.07 -62.25 -0.32 2.18 16 22 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 23 N -0.59 -14.29 2.97 -145.23 -0.43 -14.72 16 24 C -0.21 -5.63 10.59 -15.06 -0.16 -5.79 16 25 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 26 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 27 N -0.92 -26.12 10.46 55.49 0.58 -25.54 16 28 Si 0.91 21.74 29.55 -169.99 -5.02 16.72 16 29 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 30 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 31 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.09 0.95 7.97 -51.93 -0.41 0.54 16 35 H 0.18 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.17 0.46 8.06 -52.49 -0.42 0.04 16 37 H 0.18 1.24 8.06 -52.49 -0.42 0.81 16 38 H 0.40 7.68 8.62 -40.82 -0.35 7.32 16 39 H 0.05 1.07 7.85 -51.93 -0.41 0.66 16 40 H 0.06 1.49 7.98 -51.93 -0.41 1.08 16 41 H 0.05 1.17 8.14 -51.92 -0.42 0.74 16 42 H 0.05 0.88 7.85 -51.93 -0.41 0.48 16 43 H 0.05 0.84 7.88 -51.93 -0.41 0.43 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 374.26 15.07 5.64 5.64 Total: -1.00 -35.60 374.26 -9.61 -45.22 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -6.00 Total: 8.88 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: -4.45 Total: 5.39 kcal Atomic # 7 Polarization: -69.81 SS G_CDS: 0.14 Total: -69.67 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.09 Total: -12.18 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.60 -9.61 -45.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098430964.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.680 kcal (2) G-P(sol) polarization free energy of solvation -35.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds