Wall clock time and date at job start Sat Apr 11 2020 06:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34325 * 126.44439 * 2 1 4 4 N 1.34482 * 107.66740 * 179.76706 * 3 2 1 5 5 C 1.30255 * 108.69748 * 0.42673 * 4 3 2 6 6 C 1.50696 * 125.61463 * 179.84101 * 5 4 3 7 7 N 1.46897 * 109.47624 * 89.69238 * 6 5 4 8 8 C 1.46899 * 111.00355 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.47043 * 324.99919 * 8 7 6 10 10 C 1.53002 * 109.47394 * 84.99974 * 8 7 6 11 11 C 1.52997 * 109.47254 * 204.99848 * 8 7 6 12 12 C 1.53004 * 109.47236 * 64.99771 * 11 8 7 13 13 H 1.08998 * 109.46828 * 305.00171 * 12 11 8 14 14 C 1.53002 * 109.47219 * 185.00185 * 12 11 8 15 15 N 1.46498 * 109.46986 * 64.99835 * 12 11 8 16 16 C 1.34776 * 120.00181 * 204.99901 * 15 12 11 17 17 O 1.21279 * 119.99761 * 0.02562 * 16 15 12 18 18 C 1.50703 * 120.00014 * 180.02562 * 16 15 12 19 19 S 1.81005 * 109.47009 * 180.02562 * 18 16 15 20 20 C 1.76200 * 99.99751 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00386 * 0.02562 * 20 19 18 22 22 C 1.38800 * 119.99660 * 179.97438 * 20 19 18 23 23 N 1.31627 * 120.00242 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99790 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47451 * 90.00051 * 24 22 20 26 26 H 1.48501 * 109.47342 * 210.00354 * 24 22 20 27 27 H 1.48503 * 109.47447 * 329.99934 * 24 22 20 28 28 O 1.33960 * 108.76466 * 359.57283 * 5 4 3 29 29 H 1.08993 * 109.47397 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47230 * 300.00120 * 1 2 3 31 31 H 1.09002 * 109.46555 * 59.99532 * 1 2 3 32 32 H 1.08006 * 126.16764 * 0.02562 * 3 2 1 33 33 H 1.09006 * 109.47702 * 329.68789 * 6 5 4 34 34 H 1.09006 * 109.47126 * 209.69439 * 6 5 4 35 35 H 1.00901 * 110.99813 * 303.95300 * 7 6 5 36 36 H 1.09002 * 109.47075 * 59.99404 * 10 8 7 37 37 H 1.08996 * 109.47407 * 180.02562 * 10 8 7 38 38 H 1.09000 * 109.46986 * 300.00133 * 10 8 7 39 39 H 1.09001 * 109.47630 * 184.99901 * 11 8 7 40 40 H 1.09004 * 109.47346 * 305.00031 * 11 8 7 41 41 H 1.09001 * 109.46752 * 179.97438 * 14 12 11 42 42 H 1.08998 * 109.47209 * 299.99752 * 14 12 11 43 43 H 1.09002 * 109.47230 * 59.99942 * 14 12 11 44 44 H 0.97005 * 119.99875 * 25.00588 * 15 12 11 45 45 H 1.08995 * 109.47175 * 300.00501 * 18 16 15 46 46 H 1.09004 * 109.46840 * 60.00664 * 18 16 15 47 47 H 0.96993 * 120.00001 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5783 0.6477 0.0052 5 6 3.5765 -0.6548 -0.0008 6 6 4.8004 -1.5341 -0.0014 7 7 5.1985 -1.8202 1.3834 8 6 6.3908 -2.6775 1.4220 9 1 6.3595 -3.3811 0.5901 10 6 7.6463 -1.8104 1.3096 11 6 6.4210 -3.4499 2.7423 12 6 5.2305 -4.4094 2.7993 13 1 4.3070 -3.8521 2.6428 14 6 5.1894 -5.0904 4.1688 15 7 5.3713 -5.4249 1.7528 16 6 4.2793 -6.0475 1.2666 17 8 3.1801 -5.7667 1.6952 18 6 4.4243 -7.0926 0.1906 19 16 2.7909 -7.7374 -0.2481 20 6 3.2455 -8.9047 -1.4872 21 1 4.2844 -9.0336 -1.7525 22 6 2.2684 -9.6593 -2.1216 23 7 1.0022 -9.5026 -1.7979 24 14 2.7504 -10.8973 -3.4347 25 1 3.0063 -12.2160 -2.8018 26 1 1.6480 -11.0272 -4.4211 27 1 3.9803 -10.4329 -4.1254 28 8 2.3075 -1.0841 -0.0006 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 1.9822 2.1113 0.0004 33 1 5.6147 -1.0232 -0.5153 34 1 4.5761 -2.4687 -0.5155 35 1 5.3496 -0.9667 1.8999 36 1 7.6776 -1.1067 2.1415 37 1 8.5310 -2.4465 1.3378 38 1 7.6248 -1.2601 0.3690 39 1 7.3489 -4.0178 2.8100 40 1 6.3627 -2.7488 3.5749 41 1 4.3411 -5.7736 4.2094 42 1 6.1130 -5.6478 4.3252 43 1 5.0847 -4.3348 4.9473 44 1 6.2505 -5.6493 1.4099 45 1 4.8866 -6.6460 -0.6897 46 1 5.0503 -7.9064 0.5565 47 1 0.3195 -10.0302 -2.2410 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133735271.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:38 Heat of formation + Delta-G solvation = -27.119675 kcal Electronic energy + Delta-G solvation = -27318.937864 eV Core-core repulsion = 23436.293473 eV Total energy + Delta-G solvation = -3882.644391 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.39359 -39.44868 -37.88117 -35.33800 -34.73716 -33.08012 -32.40553 -31.73530 -30.81079 -28.44124 -27.63164 -26.92471 -25.45489 -24.87015 -22.31276 -21.79504 -21.21831 -20.84048 -20.11408 -17.82707 -17.27226 -16.94048 -16.35515 -16.05651 -15.54978 -15.19225 -15.00212 -14.78789 -14.73771 -14.41037 -13.99875 -13.83646 -13.62697 -13.31121 -13.23936 -13.08659 -12.91020 -12.79147 -12.59981 -12.53164 -12.30386 -12.26254 -11.93833 -11.81401 -11.40051 -11.26067 -11.05256 -11.03301 -10.99150 -10.77603 -10.71069 -10.67499 -9.77965 -9.23498 -9.04558 -8.90221 -8.72469 -8.66908 -8.18648 -6.45879 -6.19246 -3.88971 1.31604 2.47491 2.58631 3.11924 3.22924 3.24788 3.29651 3.35708 3.72608 3.83787 4.09713 4.23034 4.43092 4.61079 4.72023 4.85772 4.86667 4.94456 5.09860 5.14876 5.15819 5.21264 5.22611 5.27556 5.30936 5.36813 5.42893 5.48497 5.60301 5.65252 5.71217 5.73557 5.76698 5.83833 5.86362 5.94874 5.99256 6.17035 6.18798 6.28130 6.39326 6.59950 6.86460 7.02443 7.61721 7.61958 7.87202 8.37498 8.77857 9.26051 10.88137 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008750 B = 0.002995 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3199.316999 B = 9346.513366 C =11241.904080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.039 4.039 3 C -0.052 4.052 4 N -0.482 5.482 5 C 0.194 3.806 6 C 0.156 3.844 7 N -0.675 5.675 8 C 0.084 3.916 9 H 0.086 0.914 10 C -0.184 4.184 11 C -0.113 4.113 12 C 0.147 3.853 13 H 0.102 0.898 14 C -0.164 4.164 15 N -0.733 5.733 16 C 0.532 3.468 17 O -0.515 6.515 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.917 3.083 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 O -0.184 6.184 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.181 0.819 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.347 0.653 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.051 0.949 43 H 0.059 0.941 44 H 0.392 0.608 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.624 19.896 7.087 23.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.093 4.093 3 C -0.191 4.191 4 N -0.212 5.212 5 C -0.013 4.013 6 C 0.027 3.973 7 N -0.308 5.308 8 C -0.026 4.026 9 H 0.104 0.896 10 C -0.243 4.243 11 C -0.151 4.151 12 C 0.042 3.958 13 H 0.120 0.880 14 C -0.223 4.223 15 N -0.387 5.387 16 C 0.318 3.682 17 O -0.388 6.388 18 C -0.304 4.304 19 S 0.167 5.833 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 O -0.069 6.069 29 H 0.102 0.898 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.199 0.801 33 H 0.092 0.908 34 H 0.122 0.878 35 H 0.166 0.834 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.226 0.774 45 H 0.104 0.896 46 H 0.105 0.895 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.675 20.096 7.844 23.251 hybrid contribution 2.071 -0.911 -1.765 2.869 sum 10.746 19.185 6.079 22.814 Atomic orbital electron populations 1.20318 0.84019 1.04925 1.03658 1.23577 0.95296 0.84582 1.05867 1.22985 0.87812 1.00247 1.08054 1.70395 1.23330 1.09185 1.18322 1.25939 0.84569 0.89761 1.00999 1.20214 0.87968 0.97284 0.91855 1.60465 1.36678 1.22013 1.11601 1.21626 0.86946 0.94669 0.99343 0.89570 1.22527 0.99052 1.00674 1.02040 1.21880 0.98153 0.97844 0.97231 1.20856 1.00109 0.88201 0.86628 0.88010 1.22197 1.02190 1.01129 0.96740 1.46094 1.09310 1.41967 1.41350 1.20216 0.84156 0.81515 0.82357 1.90701 1.25586 1.63316 1.59237 1.23538 1.08062 0.99634 0.99202 1.85407 1.00319 1.48280 1.49289 1.22877 0.95907 1.25179 1.24379 0.91027 1.24981 0.94472 0.96992 0.97125 1.70017 0.99755 1.39455 1.41068 0.86189 0.78235 0.80712 0.80486 1.20299 1.20777 1.19724 1.84508 1.17621 1.36187 1.68576 0.89847 0.89310 0.89346 0.80143 0.90816 0.87807 0.83430 0.92222 0.91629 0.92537 0.91070 0.90440 0.91884 0.92994 0.92202 0.77433 0.89558 0.89479 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 10.43 36.01 0.38 -0.21 16 2 C -0.04 -0.47 7.39 -35.69 -0.26 -0.73 16 3 C -0.05 -0.59 11.80 -17.77 -0.21 -0.80 16 4 N -0.48 -6.32 11.29 -11.10 -0.13 -6.44 16 5 C 0.19 2.57 7.85 -12.95 -0.10 2.46 16 6 C 0.16 1.66 6.11 -4.98 -0.03 1.63 16 7 N -0.67 -6.55 5.61 -107.99 -0.61 -7.16 16 8 C 0.08 0.67 2.53 -67.71 -0.17 0.49 16 9 H 0.09 0.76 7.28 -51.93 -0.38 0.38 16 10 C -0.18 -1.15 9.16 37.16 0.34 -0.81 16 11 C -0.11 -0.90 4.43 -26.73 -0.12 -1.01 16 12 C 0.15 1.72 2.52 -67.93 -0.17 1.55 16 13 H 0.10 1.53 7.05 -51.93 -0.37 1.17 16 14 C -0.16 -1.88 9.48 37.16 0.35 -1.53 16 15 N -0.73 -9.54 4.45 -53.80 -0.24 -9.78 16 16 C 0.53 9.89 7.81 -10.98 -0.09 9.81 16 17 O -0.51 -11.81 15.52 5.56 0.09 -11.72 16 18 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 19 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 20 C -0.54 -15.32 9.50 30.94 0.29 -15.02 16 21 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 24 Si 0.92 21.49 29.55 -169.99 -5.02 16.46 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 O -0.18 -2.74 10.78 5.37 0.06 -2.68 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.18 1.46 8.06 -52.48 -0.42 1.04 16 33 H 0.07 0.65 7.44 -51.93 -0.39 0.27 16 34 H 0.10 1.19 8.06 -51.93 -0.42 0.77 16 35 H 0.35 3.14 8.47 -39.29 -0.33 2.80 16 36 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 0.36 7.45 -51.93 -0.39 -0.02 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.39 3.95 8.60 -40.82 -0.35 3.59 16 45 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 46 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 47 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 409.20 15.07 6.17 6.17 Total: -1.00 -36.45 409.20 -8.48 -44.94 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -7.66 Total: 4.65 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: 0.34 Total: -5.04 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: -0.24 Total: -48.94 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: 0.14 Total: -14.40 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -36.45 -8.48 -44.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133735271.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.819 kcal (2) G-P(sol) polarization free energy of solvation -36.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds