Wall clock time and date at job start Sat Apr 11 2020 06:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34325 * 126.44439 * 2 1 4 4 N 1.34482 * 107.66740 * 179.76706 * 3 2 1 5 5 C 1.30255 * 108.69748 * 0.42673 * 4 3 2 6 6 C 1.50696 * 125.61463 * 179.84101 * 5 4 3 7 7 N 1.46897 * 109.47624 * 89.69238 * 6 5 4 8 8 C 1.46899 * 111.00355 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.47043 * 324.99919 * 8 7 6 10 10 C 1.53002 * 109.47394 * 84.99974 * 8 7 6 11 11 C 1.52997 * 109.47254 * 204.99848 * 8 7 6 12 12 C 1.53004 * 109.47236 * 64.99771 * 11 8 7 13 13 H 1.08998 * 109.46828 * 305.00171 * 12 11 8 14 14 C 1.53002 * 109.47219 * 185.00185 * 12 11 8 15 15 N 1.46498 * 109.46986 * 64.99835 * 12 11 8 16 16 C 1.34776 * 120.00181 * 204.99901 * 15 12 11 17 17 O 1.21279 * 119.99761 * 0.02562 * 16 15 12 18 18 C 1.50703 * 120.00014 * 180.02562 * 16 15 12 19 19 S 1.81005 * 109.47009 * 180.02562 * 18 16 15 20 20 C 1.76200 * 99.99751 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00386 * 0.02562 * 20 19 18 22 22 C 1.38800 * 119.99660 * 179.97438 * 20 19 18 23 23 N 1.31627 * 120.00242 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99790 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47451 * 90.00051 * 24 22 20 26 26 H 1.48501 * 109.47342 * 210.00354 * 24 22 20 27 27 H 1.48503 * 109.47447 * 329.99934 * 24 22 20 28 28 O 1.33960 * 108.76466 * 359.57283 * 5 4 3 29 29 H 1.08993 * 109.47397 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47230 * 300.00120 * 1 2 3 31 31 H 1.09002 * 109.46555 * 59.99532 * 1 2 3 32 32 H 1.08006 * 126.16764 * 0.02562 * 3 2 1 33 33 H 1.09006 * 109.47702 * 329.68789 * 6 5 4 34 34 H 1.09006 * 109.47126 * 209.69439 * 6 5 4 35 35 H 1.00901 * 110.99813 * 303.95300 * 7 6 5 36 36 H 1.09002 * 109.47075 * 59.99404 * 10 8 7 37 37 H 1.08996 * 109.47407 * 180.02562 * 10 8 7 38 38 H 1.09000 * 109.46986 * 300.00133 * 10 8 7 39 39 H 1.09001 * 109.47630 * 184.99901 * 11 8 7 40 40 H 1.09004 * 109.47346 * 305.00031 * 11 8 7 41 41 H 1.09001 * 109.46752 * 179.97438 * 14 12 11 42 42 H 1.08998 * 109.47209 * 299.99752 * 14 12 11 43 43 H 1.09002 * 109.47230 * 59.99942 * 14 12 11 44 44 H 0.97005 * 119.99875 * 25.00588 * 15 12 11 45 45 H 1.08995 * 109.47175 * 300.00501 * 18 16 15 46 46 H 1.09004 * 109.46840 * 60.00664 * 18 16 15 47 47 H 0.96993 * 120.00001 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5783 0.6477 0.0052 5 6 3.5765 -0.6548 -0.0008 6 6 4.8004 -1.5341 -0.0014 7 7 5.1985 -1.8202 1.3834 8 6 6.3908 -2.6775 1.4220 9 1 6.3595 -3.3811 0.5901 10 6 7.6463 -1.8104 1.3096 11 6 6.4210 -3.4499 2.7423 12 6 5.2305 -4.4094 2.7993 13 1 4.3070 -3.8521 2.6428 14 6 5.1894 -5.0904 4.1688 15 7 5.3713 -5.4249 1.7528 16 6 4.2793 -6.0475 1.2666 17 8 3.1801 -5.7667 1.6952 18 6 4.4243 -7.0926 0.1906 19 16 2.7909 -7.7374 -0.2481 20 6 3.2455 -8.9047 -1.4872 21 1 4.2844 -9.0336 -1.7525 22 6 2.2684 -9.6593 -2.1216 23 7 1.0022 -9.5026 -1.7979 24 14 2.7504 -10.8973 -3.4347 25 1 3.0063 -12.2160 -2.8018 26 1 1.6480 -11.0272 -4.4211 27 1 3.9803 -10.4329 -4.1254 28 8 2.3075 -1.0841 -0.0006 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 1.9822 2.1113 0.0004 33 1 5.6147 -1.0232 -0.5153 34 1 4.5761 -2.4687 -0.5155 35 1 5.3496 -0.9667 1.8999 36 1 7.6776 -1.1067 2.1415 37 1 8.5310 -2.4465 1.3378 38 1 7.6248 -1.2601 0.3690 39 1 7.3489 -4.0178 2.8100 40 1 6.3627 -2.7488 3.5749 41 1 4.3411 -5.7736 4.2094 42 1 6.1130 -5.6478 4.3252 43 1 5.0847 -4.3348 4.9473 44 1 6.2505 -5.6493 1.4099 45 1 4.8866 -6.6460 -0.6897 46 1 5.0503 -7.9064 0.5565 47 1 0.3195 -10.0302 -2.2410 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133735271.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:36 Heat of formation + Delta-G solvation = -55.773675 kcal Electronic energy + Delta-G solvation = -27320.180395 eV Core-core repulsion = 23436.293473 eV Total energy + Delta-G solvation = -3883.886921 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.35040 -40.74693 -38.80758 -36.44476 -35.73053 -34.57875 -33.95018 -32.83018 -31.72694 -29.90041 -28.37453 -27.66953 -27.61409 -25.69403 -23.25455 -22.81285 -22.11308 -21.75748 -21.33818 -19.82449 -18.21438 -17.91582 -17.77795 -17.22155 -16.87422 -16.38416 -16.34873 -16.10933 -15.83385 -15.65511 -15.20816 -14.78097 -14.67661 -14.49687 -14.34143 -14.07012 -13.95448 -13.69897 -13.58820 -13.38837 -13.26191 -13.15756 -13.11661 -12.93358 -12.88529 -12.71736 -12.57960 -12.39043 -12.05371 -11.76446 -11.71416 -11.64541 -11.62111 -11.13712 -10.80242 -10.24614 -9.96757 -9.73180 -9.42281 -8.64850 -8.33761 -6.11423 0.38486 1.28791 1.42250 1.48391 1.57796 1.59167 1.72280 1.74087 2.27787 2.41718 2.92403 3.00154 3.32076 3.35660 3.71483 3.79526 4.00188 4.04923 4.10337 4.13505 4.23207 4.31321 4.34495 4.44536 4.50528 4.52669 4.56749 4.61137 4.64780 4.66712 4.79950 4.85692 4.91597 5.00474 5.04168 5.14143 5.18869 5.28787 5.31399 5.33362 5.41614 5.42247 5.68339 5.91901 6.20455 6.33548 6.65802 6.67667 7.07348 7.40418 8.75480 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008750 B = 0.002995 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3199.316999 B = 9346.513366 C =11241.904080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.055 4.055 3 C -0.057 4.057 4 N -0.493 5.493 5 C 0.178 3.822 6 C 0.162 3.838 7 N -0.686 5.686 8 C 0.084 3.916 9 H 0.077 0.923 10 C -0.175 4.175 11 C -0.101 4.101 12 C 0.147 3.853 13 H 0.066 0.934 14 C -0.160 4.160 15 N -0.704 5.704 16 C 0.533 3.467 17 O -0.566 6.566 18 C -0.129 4.129 19 S -0.153 6.153 20 C -0.546 4.546 21 H 0.082 0.918 22 C 0.013 3.987 23 N -0.912 5.912 24 Si 0.998 3.002 25 H -0.268 1.268 26 H -0.278 1.278 27 H -0.258 1.258 28 O -0.219 6.219 29 H 0.068 0.932 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.213 0.787 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.350 0.650 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.053 0.947 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.024 0.976 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.412 0.588 45 H 0.106 0.894 46 H 0.107 0.893 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.634 20.575 6.952 25.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.108 4.108 3 C -0.195 4.195 4 N -0.224 5.224 5 C -0.028 4.028 6 C 0.032 3.968 7 N -0.320 5.320 8 C -0.025 4.025 9 H 0.096 0.904 10 C -0.234 4.234 11 C -0.140 4.140 12 C 0.042 3.958 13 H 0.084 0.916 14 C -0.218 4.218 15 N -0.358 5.358 16 C 0.319 3.681 17 O -0.444 6.444 18 C -0.280 4.280 19 S 0.074 5.926 20 C -0.693 4.693 21 H 0.100 0.900 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.193 1.193 26 H -0.203 1.203 27 H -0.181 1.181 28 O -0.105 6.105 29 H 0.087 0.913 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.229 0.771 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.170 0.830 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.117 0.883 40 H 0.110 0.890 41 H 0.044 0.956 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.249 0.751 45 H 0.125 0.875 46 H 0.125 0.875 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.755 20.799 7.725 25.109 hybrid contribution 1.169 -1.012 -1.632 2.248 sum 12.924 19.787 6.093 24.407 Atomic orbital electron populations 1.20506 0.81722 1.04636 1.05842 1.24338 0.96734 0.84140 1.05581 1.23520 0.87137 1.01526 1.07351 1.70393 1.24264 1.09099 1.18640 1.26483 0.84736 0.90280 1.01340 1.20206 0.87668 0.96342 0.92547 1.60446 1.37958 1.22486 1.11094 1.21666 0.87223 0.94629 0.99026 0.90436 1.22431 0.98237 1.00547 1.02192 1.21850 0.97148 0.97222 0.97732 1.20945 1.00627 0.88064 0.86122 0.91611 1.22152 1.01595 1.01094 0.96955 1.45835 1.08693 1.40719 1.40557 1.19993 0.84659 0.81447 0.82023 1.90692 1.27836 1.64990 1.60914 1.23380 1.03340 1.00613 1.00689 1.85618 1.07311 1.49499 1.50170 1.23207 0.96518 1.25226 1.24396 0.89976 1.26127 0.94248 0.99158 0.99639 1.70188 1.01182 1.40812 1.42643 0.84961 0.78338 0.77678 0.77049 1.19296 1.20331 1.18141 1.84505 1.18758 1.37967 1.69296 0.91308 0.87081 0.87047 0.77059 0.89050 0.89405 0.83017 0.91571 0.90233 0.92817 0.88266 0.89038 0.95631 0.90822 0.90357 0.75096 0.87539 0.87478 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.12 10.43 71.24 0.74 -0.38 16 2 C -0.05 -1.33 7.39 24.79 0.18 -1.15 16 3 C -0.06 -1.27 11.80 83.39 0.98 -0.29 16 4 N -0.49 -12.91 11.29 -303.84 -3.43 -16.34 16 5 C 0.18 4.86 7.85 88.34 0.69 5.55 16 6 C 0.16 3.51 6.11 85.56 0.52 4.03 16 7 N -0.69 -13.03 5.61 -495.58 -2.78 -15.81 16 8 C 0.08 1.16 2.53 44.92 0.11 1.28 16 9 H 0.08 1.22 7.28 -2.39 -0.02 1.21 16 10 C -0.18 -1.66 9.16 71.98 0.66 -1.00 16 11 C -0.10 -1.32 4.43 30.59 0.14 -1.18 16 12 C 0.15 3.29 2.52 44.99 0.11 3.40 16 13 H 0.07 2.03 7.05 -2.39 -0.02 2.01 16 14 C -0.16 -3.46 9.48 71.98 0.68 -2.78 16 15 N -0.70 -17.46 4.45 -442.53 -1.97 -19.43 16 16 C 0.53 20.05 7.81 87.66 0.68 20.73 16 17 O -0.57 -27.27 15.52 -3.03 -0.05 -27.32 16 18 C -0.13 -5.18 6.16 71.24 0.44 -4.74 16 19 S -0.15 -8.66 20.57 -56.49 -1.16 -9.83 16 20 C -0.55 -31.51 9.50 67.95 0.65 -30.86 16 21 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 22 C 0.01 0.74 5.49 84.86 0.47 1.21 16 23 N -0.91 -56.69 13.22 21.65 0.29 -56.40 16 24 Si 1.00 43.93 29.55 68.60 2.03 45.96 16 25 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 26 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 27 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 28 O -0.22 -6.89 10.78 -3.69 -0.04 -6.92 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.21 3.06 8.06 -2.91 -0.02 3.03 16 33 H 0.09 1.58 7.44 -2.38 -0.02 1.56 16 34 H 0.09 2.14 8.06 -2.38 -0.02 2.12 16 35 H 0.35 6.07 8.47 -89.69 -0.76 5.31 16 36 H 0.07 0.57 8.13 -2.39 -0.02 0.55 16 37 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.05 0.56 7.45 -2.39 -0.02 0.54 16 39 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.41 7.11 8.60 -92.70 -0.80 6.31 16 45 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 46 H 0.11 3.87 8.14 -2.39 -0.02 3.86 16 47 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -84.42 409.20 -0.62 -85.04 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: -0.58 Total: 27.22 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 7.07 Total: -6.18 kcal Atomic # 7 Polarization: -100.08 SS G_CDS: -7.89 Total: -107.97 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -0.09 Total: -34.24 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.16 Total: -9.83 kcal Total: -84.42 -0.62 -85.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133735271.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.269 kcal (2) G-P(sol) polarization free energy of solvation -84.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds