Wall clock time and date at job start Sat Apr 11 2020 06:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34327 * 126.44839 * 2 1 4 4 N 1.34482 * 107.67115 * 179.77417 * 3 2 1 5 5 C 1.30252 * 108.69764 * 0.42266 * 4 3 2 6 6 C 1.50703 * 125.62152 * 179.84467 * 5 4 3 7 7 N 1.46890 * 109.47303 * 89.68783 * 6 5 4 8 8 C 1.46901 * 111.00183 * 180.02562 * 7 6 5 9 9 H 1.09004 * 109.47254 * 325.00321 * 8 7 6 10 10 C 1.52999 * 109.47131 * 85.00105 * 8 7 6 11 11 C 1.52996 * 109.47554 * 205.00292 * 8 7 6 12 12 C 1.53006 * 109.47102 * 64.99977 * 11 8 7 13 13 H 1.08993 * 109.46955 * 55.00306 * 12 11 8 14 14 C 1.52997 * 109.47127 * 175.00294 * 12 11 8 15 15 N 1.46500 * 109.46998 * 295.00080 * 12 11 8 16 16 C 1.34773 * 120.00050 * 155.00016 * 15 12 11 17 17 O 1.21272 * 120.00064 * 359.97438 * 16 15 12 18 18 C 1.50699 * 119.99932 * 180.02562 * 16 15 12 19 19 S 1.81001 * 109.47078 * 180.02562 * 18 16 15 20 20 C 1.76209 * 100.00010 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99842 * 359.97438 * 20 19 18 22 22 C 1.38793 * 119.99682 * 179.97438 * 20 19 18 23 23 N 1.31627 * 120.00605 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99640 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47376 * 60.00097 * 24 22 20 26 26 H 1.48502 * 109.46882 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47184 * 300.00048 * 24 22 20 28 28 O 1.33975 * 108.76384 * 359.57598 * 5 4 3 29 29 H 1.08991 * 109.47664 * 179.97438 * 1 2 3 30 30 H 1.09010 * 109.46664 * 299.99750 * 1 2 3 31 31 H 1.08996 * 109.47137 * 59.99076 * 1 2 3 32 32 H 1.07999 * 126.16558 * 0.02562 * 3 2 1 33 33 H 1.09008 * 109.46617 * 329.69025 * 6 5 4 34 34 H 1.09000 * 109.47357 * 209.69254 * 6 5 4 35 35 H 1.00900 * 111.00592 * 303.95605 * 7 6 5 36 36 H 1.08999 * 109.47003 * 60.00446 * 10 8 7 37 37 H 1.09005 * 109.47162 * 180.02562 * 10 8 7 38 38 H 1.09003 * 109.47214 * 299.99761 * 10 8 7 39 39 H 1.09000 * 109.47145 * 304.99740 * 11 8 7 40 40 H 1.09007 * 109.47521 * 184.99746 * 11 8 7 41 41 H 1.09004 * 109.47261 * 59.99697 * 14 12 11 42 42 H 1.09002 * 109.47153 * 179.97438 * 14 12 11 43 43 H 1.09001 * 109.47289 * 299.99953 * 14 12 11 44 44 H 0.97002 * 120.00030 * 335.00116 * 15 12 11 45 45 H 1.09006 * 109.47286 * 300.00269 * 18 16 15 46 46 H 1.08999 * 109.47446 * 60.00043 * 18 16 15 47 47 H 0.96998 * 120.00273 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0805 0.0000 4 7 3.5783 0.6476 0.0051 5 6 3.5765 -0.6549 -0.0010 6 6 4.8003 -1.5343 -0.0016 7 7 5.1985 -1.8203 1.3831 8 6 6.3914 -2.6768 1.4216 9 1 6.3607 -3.3802 0.5895 10 6 7.6463 -1.8087 1.3096 11 6 6.4220 -3.4495 2.7418 12 6 5.2323 -4.4099 2.7983 13 1 5.2422 -5.0527 1.9182 14 6 5.3310 -5.2705 4.0595 15 7 3.9854 -3.6414 2.8279 16 6 2.8409 -4.1966 2.3825 17 8 2.8434 -5.3321 1.9568 18 6 1.5584 -3.4059 2.4125 19 16 0.2100 -4.4182 1.7544 20 6 -1.1275 -3.2807 1.9035 21 1 -0.9551 -2.2946 2.3088 22 6 -2.4025 -3.6521 1.5000 23 7 -2.6128 -4.8541 1.0065 24 14 -3.8203 -2.4459 1.6574 25 1 -3.5289 -1.2319 0.8534 26 1 -5.0677 -3.0810 1.1616 27 1 -3.9913 -2.0663 3.0829 28 8 2.3074 -1.0841 -0.0006 29 1 -0.3634 -1.0275 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5140 -0.8899 32 1 1.9823 2.1112 0.0004 33 1 5.6146 -1.0233 -0.5156 34 1 4.5759 -2.4689 -0.5157 35 1 5.3497 -0.9669 1.8996 36 1 7.6770 -1.1053 2.1417 37 1 8.5314 -2.4442 1.3378 38 1 7.6245 -1.2582 0.3690 39 1 6.3632 -2.7486 3.5745 40 1 7.3504 -4.0168 2.8093 41 1 5.3212 -4.6276 4.9397 42 1 4.4832 -5.9543 4.1000 43 1 6.2588 -5.8422 4.0375 44 1 3.9835 -2.7330 3.1681 45 1 1.3307 -3.1214 3.4398 46 1 1.6703 -2.5088 1.8035 47 1 -3.5039 -5.1137 0.7249 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133735272.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:43 Heat of formation + Delta-G solvation = -22.465539 kcal Electronic energy + Delta-G solvation = -28820.968444 eV Core-core repulsion = 24938.525872 eV Total energy + Delta-G solvation = -3882.442572 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -43.15348 -39.35224 -37.77938 -35.15984 -34.50140 -32.88113 -32.39033 -31.64441 -30.56200 -28.31860 -27.41672 -26.89119 -25.43176 -24.65659 -22.07308 -21.72517 -21.14128 -20.70189 -19.89005 -17.73420 -17.10166 -16.80142 -16.17727 -15.95376 -15.28617 -15.16027 -15.02639 -14.78193 -14.47808 -14.16326 -13.92532 -13.70744 -13.50977 -13.03192 -13.00565 -12.89391 -12.75660 -12.69035 -12.56070 -12.30053 -12.27688 -11.99167 -11.81512 -11.68990 -11.35707 -11.16717 -11.03906 -10.99368 -10.98048 -10.76740 -10.71356 -10.44183 -9.75066 -9.10283 -9.02141 -8.88932 -8.55376 -8.30037 -8.11324 -6.39484 -6.16926 -3.84618 1.56648 2.68930 2.81824 3.16992 3.21739 3.28157 3.38799 3.43350 3.84048 4.00264 4.21234 4.25244 4.42537 4.75240 4.85360 4.96585 5.04069 5.12380 5.17351 5.21536 5.24975 5.27187 5.32954 5.40538 5.50408 5.58468 5.59025 5.66170 5.67886 5.73489 5.74918 5.81092 5.87229 5.90349 6.08997 6.11098 6.21790 6.34746 6.37349 6.40949 6.48001 6.65376 7.04340 7.06942 7.62502 7.83890 8.13765 8.39396 8.96768 9.27651 10.90443 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010488 B = 0.004433 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.954830 B = 6314.713952 C = 8570.727687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.016 4.016 3 C -0.063 4.063 4 N -0.480 5.480 5 C 0.179 3.821 6 C 0.161 3.839 7 N -0.673 5.673 8 C 0.086 3.914 9 H 0.084 0.916 10 C -0.183 4.183 11 C -0.115 4.115 12 C 0.152 3.848 13 H 0.081 0.919 14 C -0.165 4.165 15 N -0.706 5.706 16 C 0.535 3.465 17 O -0.533 6.533 18 C -0.148 4.148 19 S -0.062 6.062 20 C -0.529 4.529 21 H 0.069 0.931 22 C 0.075 3.925 23 N -0.868 5.868 24 Si 0.910 3.090 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.275 1.275 28 O -0.177 6.177 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.179 0.821 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.346 0.654 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.052 0.948 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.399 0.601 45 H 0.079 0.921 46 H 0.089 0.911 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.439 9.865 1.057 20.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.071 4.071 3 C -0.202 4.202 4 N -0.211 5.211 5 C -0.028 4.028 6 C 0.031 3.969 7 N -0.305 5.305 8 C -0.024 4.024 9 H 0.102 0.898 10 C -0.242 4.242 11 C -0.153 4.153 12 C 0.047 3.953 13 H 0.100 0.900 14 C -0.223 4.223 15 N -0.360 5.360 16 C 0.321 3.679 17 O -0.409 6.409 18 C -0.299 4.299 19 S 0.165 5.835 20 C -0.677 4.677 21 H 0.087 0.913 22 C -0.134 4.134 23 N -0.503 5.503 24 Si 0.736 3.264 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.200 1.200 28 O -0.062 6.062 29 H 0.119 0.881 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.196 0.804 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.164 0.836 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.234 0.766 45 H 0.097 0.903 46 H 0.107 0.893 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 18.413 7.615 0.339 19.928 hybrid contribution -0.951 2.967 0.523 3.160 sum 17.462 10.582 0.862 20.436 Atomic orbital electron populations 1.20454 0.83735 1.06619 1.03177 1.23686 0.95366 0.84223 1.03804 1.22936 0.87774 1.00210 1.09293 1.70343 1.23425 1.09215 1.18087 1.25826 0.84810 0.89784 1.02393 1.20125 0.88092 0.97071 0.91610 1.60567 1.36301 1.21783 1.11890 1.21617 0.87015 0.94711 0.99033 0.89804 1.22518 0.99017 1.00624 1.02043 1.21931 0.98190 0.98194 0.97018 1.20682 0.83605 0.92492 0.98550 0.90050 1.22211 1.02136 1.00175 0.97810 1.45823 1.06819 1.17523 1.65804 1.20115 0.84555 0.86837 0.76353 1.90662 1.85942 1.18567 1.45723 1.23493 0.97853 1.03942 1.04616 1.85354 0.96967 1.19497 1.81662 1.22789 0.94682 1.01665 1.48569 0.91268 1.24937 0.98019 0.95659 0.94813 1.70008 1.22527 1.18179 1.39593 0.86365 0.80745 0.80593 0.78650 1.19846 1.20914 1.20032 1.84557 1.17226 1.36107 1.68262 0.88107 0.89412 0.89683 0.80368 0.91102 0.88151 0.83557 0.92239 0.91758 0.92561 0.91268 0.90190 0.92876 0.91824 0.92324 0.76620 0.90270 0.89273 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 10.43 36.01 0.38 -0.80 16 2 C -0.02 -0.25 7.39 -35.69 -0.26 -0.51 16 3 C -0.06 -0.87 11.80 -17.77 -0.21 -1.08 16 4 N -0.48 -6.91 11.29 -11.10 -0.13 -7.03 16 5 C 0.18 2.53 7.86 -12.95 -0.10 2.43 16 6 C 0.16 1.73 6.11 -4.98 -0.03 1.70 16 7 N -0.67 -6.26 3.84 -107.99 -0.42 -6.68 16 8 C 0.09 0.65 2.59 -67.71 -0.18 0.48 16 9 H 0.08 0.71 7.80 -51.93 -0.41 0.30 16 10 C -0.18 -1.10 9.16 37.16 0.34 -0.76 16 11 C -0.11 -0.88 4.54 -26.73 -0.12 -1.00 16 12 C 0.15 1.76 2.57 -67.93 -0.17 1.58 16 13 H 0.08 1.12 7.58 -51.93 -0.39 0.73 16 14 C -0.16 -1.85 9.48 37.16 0.35 -1.50 16 15 N -0.71 -9.81 3.80 -53.81 -0.20 -10.01 16 16 C 0.54 10.36 7.81 -10.99 -0.09 10.27 16 17 O -0.53 -12.37 15.52 5.56 0.09 -12.28 16 18 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 19 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 20 C -0.53 -14.66 9.50 30.94 0.29 -14.36 16 21 H 0.07 1.81 7.80 -52.49 -0.41 1.41 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -25.87 13.22 55.49 0.73 -25.13 16 24 Si 0.91 20.76 29.55 -169.99 -5.02 15.74 16 25 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 O -0.18 -2.98 9.39 5.33 0.05 -2.93 16 29 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 30 H 0.09 1.11 8.14 -51.92 -0.42 0.69 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.18 1.92 8.06 -52.49 -0.42 1.49 16 33 H 0.07 0.64 7.44 -51.92 -0.39 0.26 16 34 H 0.10 1.15 8.06 -51.93 -0.42 0.74 16 35 H 0.35 3.03 8.46 -39.29 -0.33 2.70 16 36 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 0.36 7.45 -51.93 -0.39 -0.03 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.40 4.92 7.59 -40.82 -0.31 4.61 16 45 H 0.08 1.60 8.14 -51.91 -0.42 1.18 16 46 H 0.09 1.84 6.71 -51.92 -0.35 1.49 16 47 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 404.22 15.07 6.09 6.09 Total: -1.00 -34.32 404.22 -8.29 -42.61 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -7.60 Total: 8.01 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: 0.33 Total: -4.49 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: -0.01 Total: -48.86 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: 0.14 Total: -15.21 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.32 -8.29 -42.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133735272.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.146 kcal (2) G-P(sol) polarization free energy of solvation -34.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds