Wall clock time and date at job start Sat Apr 11 2020 06:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34327 * 126.44839 * 2 1 4 4 N 1.34482 * 107.67115 * 179.77417 * 3 2 1 5 5 C 1.30252 * 108.69764 * 0.42266 * 4 3 2 6 6 C 1.50703 * 125.62152 * 179.84467 * 5 4 3 7 7 N 1.46890 * 109.47303 * 89.68783 * 6 5 4 8 8 C 1.46901 * 111.00183 * 180.02562 * 7 6 5 9 9 H 1.09004 * 109.47254 * 325.00321 * 8 7 6 10 10 C 1.52999 * 109.47131 * 85.00105 * 8 7 6 11 11 C 1.52996 * 109.47554 * 205.00292 * 8 7 6 12 12 C 1.53006 * 109.47102 * 64.99977 * 11 8 7 13 13 H 1.08993 * 109.46955 * 55.00306 * 12 11 8 14 14 C 1.52997 * 109.47127 * 175.00294 * 12 11 8 15 15 N 1.46500 * 109.46998 * 295.00080 * 12 11 8 16 16 C 1.34773 * 120.00050 * 155.00016 * 15 12 11 17 17 O 1.21272 * 120.00064 * 359.97438 * 16 15 12 18 18 C 1.50699 * 119.99932 * 180.02562 * 16 15 12 19 19 S 1.81001 * 109.47078 * 180.02562 * 18 16 15 20 20 C 1.76209 * 100.00010 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99842 * 359.97438 * 20 19 18 22 22 C 1.38793 * 119.99682 * 179.97438 * 20 19 18 23 23 N 1.31627 * 120.00605 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99640 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47376 * 60.00097 * 24 22 20 26 26 H 1.48502 * 109.46882 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47184 * 300.00048 * 24 22 20 28 28 O 1.33975 * 108.76384 * 359.57598 * 5 4 3 29 29 H 1.08991 * 109.47664 * 179.97438 * 1 2 3 30 30 H 1.09010 * 109.46664 * 299.99750 * 1 2 3 31 31 H 1.08996 * 109.47137 * 59.99076 * 1 2 3 32 32 H 1.07999 * 126.16558 * 0.02562 * 3 2 1 33 33 H 1.09008 * 109.46617 * 329.69025 * 6 5 4 34 34 H 1.09000 * 109.47357 * 209.69254 * 6 5 4 35 35 H 1.00900 * 111.00592 * 303.95605 * 7 6 5 36 36 H 1.08999 * 109.47003 * 60.00446 * 10 8 7 37 37 H 1.09005 * 109.47162 * 180.02562 * 10 8 7 38 38 H 1.09003 * 109.47214 * 299.99761 * 10 8 7 39 39 H 1.09000 * 109.47145 * 304.99740 * 11 8 7 40 40 H 1.09007 * 109.47521 * 184.99746 * 11 8 7 41 41 H 1.09004 * 109.47261 * 59.99697 * 14 12 11 42 42 H 1.09002 * 109.47153 * 179.97438 * 14 12 11 43 43 H 1.09001 * 109.47289 * 299.99953 * 14 12 11 44 44 H 0.97002 * 120.00030 * 335.00116 * 15 12 11 45 45 H 1.09006 * 109.47286 * 300.00269 * 18 16 15 46 46 H 1.08999 * 109.47446 * 60.00043 * 18 16 15 47 47 H 0.96998 * 120.00273 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0805 0.0000 4 7 3.5783 0.6476 0.0051 5 6 3.5765 -0.6549 -0.0010 6 6 4.8003 -1.5343 -0.0016 7 7 5.1985 -1.8203 1.3831 8 6 6.3914 -2.6768 1.4216 9 1 6.3607 -3.3802 0.5895 10 6 7.6463 -1.8087 1.3096 11 6 6.4220 -3.4495 2.7418 12 6 5.2323 -4.4099 2.7983 13 1 5.2422 -5.0527 1.9182 14 6 5.3310 -5.2705 4.0595 15 7 3.9854 -3.6414 2.8279 16 6 2.8409 -4.1966 2.3825 17 8 2.8434 -5.3321 1.9568 18 6 1.5584 -3.4059 2.4125 19 16 0.2100 -4.4182 1.7544 20 6 -1.1275 -3.2807 1.9035 21 1 -0.9551 -2.2946 2.3088 22 6 -2.4025 -3.6521 1.5000 23 7 -2.6128 -4.8541 1.0065 24 14 -3.8203 -2.4459 1.6574 25 1 -3.5289 -1.2319 0.8534 26 1 -5.0677 -3.0810 1.1616 27 1 -3.9913 -2.0663 3.0829 28 8 2.3074 -1.0841 -0.0006 29 1 -0.3634 -1.0275 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5140 -0.8899 32 1 1.9823 2.1112 0.0004 33 1 5.6146 -1.0233 -0.5156 34 1 4.5759 -2.4689 -0.5157 35 1 5.3497 -0.9669 1.8996 36 1 7.6770 -1.1053 2.1417 37 1 8.5314 -2.4442 1.3378 38 1 7.6245 -1.2582 0.3690 39 1 6.3632 -2.7486 3.5745 40 1 7.3504 -4.0168 2.8093 41 1 5.3212 -4.6276 4.9397 42 1 4.4832 -5.9543 4.1000 43 1 6.2588 -5.8422 4.0375 44 1 3.9835 -2.7330 3.1681 45 1 1.3307 -3.1214 3.4398 46 1 1.6703 -2.5088 1.8035 47 1 -3.5039 -5.1137 0.7249 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133735272.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:41 Heat of formation + Delta-G solvation = -47.882551 kcal Electronic energy + Delta-G solvation = -28822.070608 eV Core-core repulsion = 24938.525872 eV Total energy + Delta-G solvation = -3883.544736 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.27538 -40.65988 -38.76238 -36.28098 -35.63111 -34.52998 -33.91228 -32.85310 -31.58935 -29.84006 -28.30102 -27.64982 -27.55852 -25.62837 -23.16872 -22.77836 -22.07093 -21.62633 -21.25970 -19.72952 -18.12864 -17.95347 -17.57994 -17.18124 -16.83606 -16.28883 -16.23842 -16.13710 -15.78403 -15.50746 -15.18186 -14.73831 -14.66859 -14.43988 -14.16856 -14.01550 -13.94323 -13.66064 -13.57728 -13.37824 -13.16119 -13.09768 -13.04137 -12.87574 -12.82955 -12.65545 -12.53051 -12.29317 -12.17895 -11.72414 -11.69485 -11.58534 -11.56897 -11.07363 -10.72053 -10.19738 -9.93582 -9.65658 -9.26981 -8.58383 -8.28450 -6.04714 0.46328 1.31487 1.44491 1.50392 1.61507 1.63997 1.76791 1.85294 2.31282 2.55067 2.96331 3.05529 3.35355 3.44597 3.72309 3.85465 4.05727 4.12895 4.16983 4.18875 4.29528 4.33825 4.35680 4.44183 4.53237 4.54007 4.59311 4.64378 4.65417 4.76701 4.82301 4.88132 4.98394 5.02700 5.06078 5.09294 5.28289 5.31456 5.33923 5.37791 5.43178 5.46051 5.80942 5.94075 6.25272 6.37694 6.74330 6.80598 7.12375 7.51615 8.80629 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010488 B = 0.004433 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.954830 B = 6314.713952 C = 8570.727687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.044 4.044 3 C -0.054 4.054 4 N -0.489 5.489 5 C 0.177 3.823 6 C 0.165 3.835 7 N -0.681 5.681 8 C 0.087 3.913 9 H 0.074 0.926 10 C -0.174 4.174 11 C -0.102 4.102 12 C 0.148 3.852 13 H 0.057 0.943 14 C -0.160 4.160 15 N -0.678 5.678 16 C 0.535 3.465 17 O -0.578 6.578 18 C -0.121 4.121 19 S -0.147 6.147 20 C -0.532 4.532 21 H 0.078 0.922 22 C 0.018 3.982 23 N -0.913 5.913 24 Si 0.986 3.014 25 H -0.249 1.249 26 H -0.283 1.283 27 H -0.266 1.266 28 O -0.210 6.210 29 H 0.058 0.942 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.209 0.791 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.352 0.648 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.053 0.947 39 H 0.085 0.915 40 H 0.106 0.894 41 H 0.068 0.932 42 H 0.025 0.975 43 H 0.084 0.916 44 H 0.410 0.590 45 H 0.090 0.910 46 H 0.094 0.906 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.336 12.783 2.164 24.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.098 4.098 3 C -0.192 4.192 4 N -0.219 5.219 5 C -0.029 4.029 6 C 0.036 3.964 7 N -0.315 5.315 8 C -0.022 4.022 9 H 0.092 0.908 10 C -0.232 4.232 11 C -0.141 4.141 12 C 0.044 3.956 13 H 0.075 0.925 14 C -0.218 4.218 15 N -0.330 5.330 16 C 0.321 3.679 17 O -0.458 6.458 18 C -0.273 4.273 19 S 0.080 5.920 20 C -0.680 4.680 21 H 0.096 0.904 22 C -0.187 4.187 23 N -0.550 5.550 24 Si 0.807 3.193 25 H -0.173 1.173 26 H -0.208 1.208 27 H -0.191 1.191 28 O -0.096 6.096 29 H 0.078 0.922 30 H 0.120 0.880 31 H 0.127 0.873 32 H 0.226 0.774 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.171 0.829 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.104 0.896 40 H 0.125 0.875 41 H 0.087 0.913 42 H 0.044 0.956 43 H 0.103 0.897 44 H 0.247 0.753 45 H 0.108 0.892 46 H 0.113 0.887 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 20.369 10.581 1.472 23.000 hybrid contribution -1.388 2.054 0.196 2.486 sum 18.981 12.635 1.668 22.863 Atomic orbital electron populations 1.20447 0.83458 1.04339 1.05135 1.23966 0.95826 0.84426 1.05551 1.23389 0.87229 1.01084 1.07492 1.70386 1.23666 1.09184 1.18673 1.26537 0.84770 0.90283 1.01338 1.20176 0.87450 0.96163 0.92650 1.60521 1.37532 1.22355 1.11096 1.21634 0.87266 0.94570 0.98740 0.90815 1.22410 0.98155 1.00448 1.02228 1.21896 0.96972 0.97668 0.97522 1.20925 0.83648 0.93158 0.97913 0.92481 1.22166 1.01838 0.99850 0.97995 1.45654 1.06143 1.17856 1.63382 1.19834 0.85319 0.86072 0.76711 1.90648 1.86540 1.20364 1.48248 1.23284 0.96555 1.02875 1.04556 1.85533 1.00598 1.22887 1.82937 1.23036 0.94786 1.01673 1.48544 0.90375 1.26020 1.01099 0.97597 0.93943 1.70186 1.23262 1.20637 1.40945 0.85191 0.76293 0.78498 0.79276 1.17317 1.20849 1.19052 1.84549 1.18536 1.37482 1.69026 0.92246 0.87977 0.87256 0.77444 0.89026 0.89507 0.82875 0.91488 0.90572 0.92817 0.89633 0.87532 0.91303 0.95615 0.89713 0.75268 0.89189 0.88727 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.15 10.43 71.24 0.74 -1.41 16 2 C -0.04 -1.33 7.39 24.79 0.18 -1.15 16 3 C -0.05 -1.38 11.80 83.39 0.98 -0.40 16 4 N -0.49 -13.31 11.29 -303.82 -3.43 -16.74 16 5 C 0.18 4.92 7.86 88.34 0.69 5.61 16 6 C 0.17 3.42 6.11 85.56 0.52 3.94 16 7 N -0.68 -11.47 3.84 -495.58 -1.91 -13.38 16 8 C 0.09 1.11 2.59 44.91 0.12 1.23 16 9 H 0.07 1.13 7.80 -2.38 -0.02 1.11 16 10 C -0.17 -1.49 9.16 71.98 0.66 -0.83 16 11 C -0.10 -1.23 4.54 30.60 0.14 -1.10 16 12 C 0.15 3.23 2.57 44.99 0.12 3.34 16 13 H 0.06 1.57 7.58 -2.39 -0.02 1.56 16 14 C -0.16 -3.36 9.48 71.98 0.68 -2.67 16 15 N -0.68 -18.37 3.80 -442.55 -1.68 -20.05 16 16 C 0.54 21.24 7.81 87.66 0.68 21.93 16 17 O -0.58 -28.13 15.52 -3.01 -0.05 -28.18 16 18 C -0.12 -5.28 6.16 71.24 0.44 -4.84 16 19 S -0.15 -8.38 20.57 -56.49 -1.16 -9.54 16 20 C -0.53 -30.27 9.50 67.95 0.65 -29.62 16 21 H 0.08 4.14 7.80 -2.91 -0.02 4.12 16 22 C 0.02 1.01 5.49 84.86 0.47 1.48 16 23 N -0.91 -56.28 13.22 21.65 0.29 -55.99 16 24 Si 0.99 42.66 29.55 68.60 2.03 44.68 16 25 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 26 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 27 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 28 O -0.21 -7.19 9.39 -3.83 -0.04 -7.23 16 29 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.10 2.46 8.14 -2.38 -0.02 2.44 16 31 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.21 3.87 8.06 -2.91 -0.02 3.84 16 33 H 0.09 1.50 7.44 -2.38 -0.02 1.48 16 34 H 0.09 2.03 8.06 -2.39 -0.02 2.01 16 35 H 0.35 5.25 8.46 -89.69 -0.76 4.49 16 36 H 0.07 0.51 8.13 -2.39 -0.02 0.49 16 37 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 38 H 0.05 0.52 7.45 -2.39 -0.02 0.50 16 39 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 41 H 0.07 1.22 8.14 -2.38 -0.02 1.21 16 42 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.41 9.40 7.59 -92.71 -0.70 8.69 16 45 H 0.09 3.67 8.14 -2.39 -0.02 3.65 16 46 H 0.09 4.01 6.71 -2.40 -0.02 3.99 16 47 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -79.40 404.22 0.65 -78.75 By element: Atomic # 1 Polarization: 32.64 SS G_CDS: -0.48 Total: 32.16 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: 7.08 Total: -4.49 kcal Atomic # 7 Polarization: -99.43 SS G_CDS: -6.73 Total: -106.16 kcal Atomic # 8 Polarization: -35.32 SS G_CDS: -0.08 Total: -35.41 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.16 Total: -9.54 kcal Total: -79.40 0.65 -78.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133735272.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.870 kcal (2) G-P(sol) polarization free energy of solvation -79.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds