Wall clock time and date at job start Sat Apr 11 2020 06:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34476 * 126.16926 * 2 1 4 4 C 1.30254 * 108.70475 * 179.97438 * 3 2 1 5 5 O 1.33970 * 108.75715 * 359.73329 * 4 3 2 6 6 C 1.34330 * 126.16318 * 180.02562 * 2 1 3 7 7 C 1.50700 * 126.44526 * 0.02562 * 6 2 1 8 8 N 1.46898 * 109.47456 * 89.99754 * 7 6 2 9 9 C 1.46899 * 111.00227 * 180.02562 * 8 7 6 10 10 H 1.09002 * 109.46916 * 34.99914 * 9 8 7 11 11 C 1.53007 * 109.47037 * 275.00321 * 9 8 7 12 12 C 1.52997 * 109.47315 * 155.00148 * 9 8 7 13 13 C 1.52999 * 109.47080 * 295.00275 * 12 9 8 14 14 H 1.09004 * 109.47434 * 54.99895 * 13 12 9 15 15 C 1.52997 * 109.47114 * 174.99701 * 13 12 9 16 16 N 1.46498 * 109.46963 * 294.99494 * 13 12 9 17 17 C 1.34777 * 119.99828 * 154.72290 * 16 13 12 18 18 O 1.21283 * 120.00222 * 0.28168 * 17 16 13 19 19 C 1.50703 * 120.00290 * 180.27728 * 17 16 13 20 20 S 1.81000 * 109.47389 * 180.02562 * 19 17 16 21 21 C 1.76198 * 99.99715 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00516 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99710 * 179.97438 * 21 20 19 24 24 N 1.31634 * 120.00163 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00011 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46661 * 60.00586 * 25 23 21 27 27 H 1.48501 * 109.47391 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47355 * 300.00441 * 25 23 21 29 29 H 1.08995 * 109.47213 * 270.00278 * 1 2 3 30 30 H 1.09008 * 109.46981 * 29.99994 * 1 2 3 31 31 H 1.08994 * 109.47516 * 149.99779 * 1 2 3 32 32 H 1.07995 * 125.62118 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.47028 * 329.99757 * 7 6 2 34 34 H 1.09004 * 109.47383 * 210.00323 * 7 6 2 35 35 H 1.00900 * 111.00199 * 303.96089 * 8 7 6 36 36 H 1.09002 * 109.46936 * 299.99582 * 11 9 8 37 37 H 1.09000 * 109.46920 * 60.00241 * 11 9 8 38 38 H 1.08997 * 109.46639 * 180.02562 * 11 9 8 39 39 H 1.08997 * 109.47302 * 174.99738 * 12 9 8 40 40 H 1.09007 * 109.46917 * 55.00273 * 12 9 8 41 41 H 1.09009 * 109.47238 * 59.99946 * 15 13 12 42 42 H 1.08997 * 109.47293 * 179.97438 * 15 13 12 43 43 H 1.09003 * 109.47189 * 300.00067 * 15 13 12 44 44 H 0.97001 * 120.00384 * 335.00737 * 16 13 12 45 45 H 1.08998 * 109.46954 * 300.00581 * 19 17 16 46 46 H 1.09002 * 109.46946 * 59.99717 * 19 17 16 47 47 H 0.96991 * 119.99795 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3006 1.0856 0.0000 4 6 3.5431 0.6947 0.0006 5 8 3.5733 -0.6447 0.0068 6 6 2.2996 -1.0845 -0.0005 7 6 1.8492 -2.5226 -0.0017 8 7 1.7033 -2.9890 -1.3870 9 6 1.2638 -4.3901 -1.4273 10 1 0.5855 -4.5822 -0.5959 11 6 2.4813 -5.3099 -1.3152 12 6 0.5406 -4.6600 -2.7483 13 6 -0.7441 -3.8310 -2.8050 14 1 -0.5051 -2.7792 -2.6473 15 6 -1.4029 -4.0044 -4.1750 16 7 -1.6646 -4.2847 -1.7596 17 6 -2.5952 -3.4422 -1.2690 18 8 -2.6739 -2.3100 -1.6967 19 6 -3.5381 -3.9069 -0.1892 20 16 -4.6602 -2.5576 0.2538 21 6 -5.6215 -3.3548 1.4968 22 1 -5.4171 -4.3816 1.7620 23 6 -6.6409 -2.6628 2.1360 24 7 -6.8898 -1.4112 1.8132 25 14 -7.6606 -3.5081 3.4532 26 1 -6.7736 -3.9447 4.5614 27 1 -8.6773 -2.5605 3.9764 28 1 -8.3416 -4.6912 2.8688 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8901 -0.5139 31 1 -0.3634 -0.8899 -0.5138 32 1 4.4066 1.3433 0.0003 33 1 0.8911 -2.6037 0.5118 34 1 2.5897 -3.1358 0.5121 35 1 1.0701 -2.3967 -1.9031 36 1 3.1595 -5.1178 -2.1466 37 1 2.9965 -5.1177 -0.3740 38 1 2.1552 -6.3495 -1.3456 39 1 0.2929 -5.7192 -2.8171 40 1 1.1884 -4.3836 -3.5802 41 1 -1.6419 -5.0562 -4.3327 42 1 -2.3183 -3.4141 -4.2152 43 1 -0.7180 -3.6668 -4.9528 44 1 -1.6017 -5.1902 -1.4175 45 1 -4.1170 -4.7559 -0.5529 46 1 -2.9657 -4.2070 0.6886 47 1 -7.6024 -0.9278 2.2597 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133735301.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:48 Heat of formation + Delta-G solvation = -27.193934 kcal Electronic energy + Delta-G solvation = -27849.049930 eV Core-core repulsion = 23966.402319 eV Total energy + Delta-G solvation = -3882.647611 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 2.85 seconds Orbital eigenvalues (eV) -43.40182 -39.72964 -37.94233 -35.43437 -35.10754 -32.95949 -32.45498 -31.46314 -30.33439 -28.59265 -27.83341 -27.01273 -25.50870 -24.99351 -22.28065 -21.97443 -20.89372 -20.70846 -20.23389 -17.89310 -17.29513 -16.86903 -16.54185 -16.34213 -16.13898 -15.43933 -14.99450 -14.83434 -14.81619 -14.48757 -14.10047 -13.78964 -13.44401 -13.21950 -13.15712 -13.09361 -12.91075 -12.69651 -12.52535 -12.39116 -12.25730 -12.15885 -11.96390 -11.90321 -11.48052 -11.16897 -11.07173 -11.06100 -11.02902 -10.80542 -10.76157 -10.53644 -9.85245 -9.43468 -9.09557 -9.02491 -8.88456 -8.64754 -8.27753 -6.53118 -6.24322 -3.95169 1.32527 2.58505 2.65261 2.98952 3.03069 3.21221 3.25688 3.28686 3.66747 3.89674 4.08668 4.17889 4.35545 4.51579 4.67210 4.77769 4.85759 4.99538 5.06552 5.10905 5.14883 5.17084 5.21696 5.30734 5.41290 5.52573 5.55720 5.56767 5.60776 5.65802 5.73897 5.77684 5.79263 5.83067 5.94346 5.97318 6.00448 6.08813 6.11364 6.15837 6.38430 6.57548 6.66923 7.01985 7.56409 7.64281 7.65028 8.32037 8.55505 9.21068 10.82926 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009958 B = 0.003094 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.031637 B = 9047.120428 C =10653.655963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.002 3.998 3 N -0.484 5.484 4 C 0.166 3.834 5 O -0.199 6.199 6 C -0.046 4.046 7 C 0.145 3.855 8 N -0.681 5.681 9 C 0.082 3.918 10 H 0.053 0.947 11 C -0.140 4.140 12 C -0.130 4.130 13 C 0.138 3.862 14 H 0.085 0.915 15 C -0.163 4.163 16 N -0.735 5.735 17 C 0.531 3.469 18 O -0.515 6.515 19 C -0.155 4.155 20 S -0.056 6.056 21 C -0.538 4.538 22 H 0.071 0.929 23 C 0.075 3.925 24 N -0.867 5.867 25 Si 0.917 3.083 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.248 0.752 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.347 0.653 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.056 0.944 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.397 0.603 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.197 -6.839 -7.246 23.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.118 4.118 3 N -0.214 5.214 4 C -0.060 4.060 5 O -0.085 6.085 6 C -0.100 4.100 7 C 0.016 3.984 8 N -0.316 5.316 9 C -0.027 4.027 10 H 0.071 0.929 11 C -0.198 4.198 12 C -0.168 4.168 13 C 0.033 3.967 14 H 0.103 0.897 15 C -0.221 4.221 16 N -0.390 5.390 17 C 0.317 3.683 18 O -0.389 6.389 19 C -0.306 4.306 20 S 0.170 5.830 21 C -0.686 4.686 22 H 0.089 0.911 23 C -0.135 4.135 24 N -0.502 5.502 25 Si 0.744 3.256 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.200 1.200 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.264 0.736 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.168 0.832 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.230 0.770 45 H 0.106 0.894 46 H 0.105 0.895 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 21.457 -4.338 -8.005 23.309 hybrid contribution -1.099 -2.692 1.786 3.412 sum 20.358 -7.030 -6.219 22.417 Atomic orbital electron populations 1.20177 0.85485 1.04003 1.03565 1.21740 0.98283 0.87447 1.04333 1.70383 1.01359 1.31890 1.17752 1.27987 0.97597 0.79441 1.01014 1.84411 1.30112 1.24428 1.69521 1.22935 0.80796 0.97321 1.08903 1.20254 1.00506 0.86412 0.91248 1.60646 1.55466 1.03345 1.12171 1.21557 0.95638 0.88114 0.97428 0.92910 1.21805 0.97669 0.97980 1.02355 1.22117 0.95570 1.00919 0.98177 1.20941 0.88449 0.99416 0.87883 0.89743 1.22161 1.01822 1.02137 0.95997 1.46165 1.35535 1.16196 1.41107 1.20322 0.80293 0.85256 0.82380 1.90706 1.69721 1.19010 1.59417 1.23549 1.01253 1.06790 0.99001 1.85377 1.35752 1.12850 1.48985 1.22824 1.20508 1.01052 1.24228 0.91054 1.24978 0.96502 0.94880 0.97101 1.69999 1.30315 1.09012 1.40873 0.86247 0.79431 0.79093 0.80874 1.19941 1.20782 1.19951 0.90225 0.90212 0.90606 0.73648 0.91274 0.89169 0.83189 0.91916 0.92768 0.92383 0.90299 0.89438 0.92515 0.91600 0.91858 0.76954 0.89352 0.89473 0.92096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.06 10.05 36.00 0.36 -0.70 16 2 C 0.00 0.03 7.11 -82.81 -0.59 -0.55 16 3 N -0.48 -6.69 11.29 -11.18 -0.13 -6.82 16 4 C 0.17 1.73 13.23 52.09 0.69 2.42 16 5 O -0.20 -2.34 10.78 5.35 0.06 -2.29 16 6 C -0.05 -0.57 6.90 -35.69 -0.25 -0.82 16 7 C 0.14 1.49 5.64 -4.98 -0.03 1.47 16 8 N -0.68 -6.58 6.30 -107.99 -0.68 -7.26 16 9 C 0.08 0.65 2.59 -67.71 -0.18 0.48 16 10 H 0.05 0.45 7.28 -51.93 -0.38 0.08 16 11 C -0.14 -0.98 9.42 37.16 0.35 -0.63 16 12 C -0.13 -0.94 4.34 -26.73 -0.12 -1.05 16 13 C 0.14 1.39 2.48 -67.93 -0.17 1.22 16 14 H 0.08 1.02 5.72 -51.93 -0.30 0.72 16 15 C -0.16 -1.63 9.49 37.16 0.35 -1.28 16 16 N -0.74 -8.43 4.45 -53.81 -0.24 -8.67 16 17 C 0.53 8.92 7.82 -10.98 -0.09 8.83 16 18 O -0.51 -10.54 15.52 5.55 0.09 -10.45 16 19 C -0.16 -2.94 6.16 36.01 0.22 -2.72 16 20 S -0.06 -1.46 20.57 -107.50 -2.21 -3.68 16 21 C -0.54 -14.98 9.50 30.94 0.29 -14.69 16 22 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 24 N -0.87 -25.76 13.22 55.49 0.73 -25.02 16 25 Si 0.92 21.11 29.55 -169.99 -5.02 16.09 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 28 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 29 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.08 1.15 8.14 -51.92 -0.42 0.73 16 31 H 0.08 1.08 7.79 -51.93 -0.40 0.68 16 32 H 0.25 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.07 0.74 7.71 -51.93 -0.40 0.34 16 34 H 0.09 0.84 7.44 -51.93 -0.39 0.45 16 35 H 0.35 3.72 6.40 -39.29 -0.25 3.47 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.40 7.45 -51.93 -0.39 0.01 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.40 3.55 8.60 -40.82 -0.35 3.20 16 45 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 46 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 47 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 405.33 15.07 6.11 6.11 Total: -1.00 -34.69 405.33 -8.00 -42.69 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -7.47 Total: 5.33 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 0.76 Total: -6.02 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: -0.31 Total: -47.78 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.14 Total: -12.74 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.21 Total: -3.68 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.69 -8.00 -42.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133735301.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.497 kcal (2) G-P(sol) polarization free energy of solvation -34.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds