Wall clock time and date at job start Sat Apr 11 2020 06:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34476 * 126.16926 * 2 1 4 4 C 1.30254 * 108.70475 * 179.97438 * 3 2 1 5 5 O 1.33970 * 108.75715 * 359.73329 * 4 3 2 6 6 C 1.34330 * 126.16318 * 180.02562 * 2 1 3 7 7 C 1.50700 * 126.44526 * 0.02562 * 6 2 1 8 8 N 1.46898 * 109.47456 * 89.99754 * 7 6 2 9 9 C 1.46899 * 111.00227 * 180.02562 * 8 7 6 10 10 H 1.09002 * 109.46916 * 34.99914 * 9 8 7 11 11 C 1.53007 * 109.47037 * 275.00321 * 9 8 7 12 12 C 1.52997 * 109.47315 * 155.00148 * 9 8 7 13 13 C 1.52999 * 109.47080 * 295.00275 * 12 9 8 14 14 H 1.09004 * 109.47434 * 54.99895 * 13 12 9 15 15 C 1.52997 * 109.47114 * 174.99701 * 13 12 9 16 16 N 1.46498 * 109.46963 * 294.99494 * 13 12 9 17 17 C 1.34777 * 119.99828 * 154.72290 * 16 13 12 18 18 O 1.21283 * 120.00222 * 0.28168 * 17 16 13 19 19 C 1.50703 * 120.00290 * 180.27728 * 17 16 13 20 20 S 1.81000 * 109.47389 * 180.02562 * 19 17 16 21 21 C 1.76198 * 99.99715 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00516 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99710 * 179.97438 * 21 20 19 24 24 N 1.31634 * 120.00163 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00011 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46661 * 60.00586 * 25 23 21 27 27 H 1.48501 * 109.47391 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47355 * 300.00441 * 25 23 21 29 29 H 1.08995 * 109.47213 * 270.00278 * 1 2 3 30 30 H 1.09008 * 109.46981 * 29.99994 * 1 2 3 31 31 H 1.08994 * 109.47516 * 149.99779 * 1 2 3 32 32 H 1.07995 * 125.62118 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.47028 * 329.99757 * 7 6 2 34 34 H 1.09004 * 109.47383 * 210.00323 * 7 6 2 35 35 H 1.00900 * 111.00199 * 303.96089 * 8 7 6 36 36 H 1.09002 * 109.46936 * 299.99582 * 11 9 8 37 37 H 1.09000 * 109.46920 * 60.00241 * 11 9 8 38 38 H 1.08997 * 109.46639 * 180.02562 * 11 9 8 39 39 H 1.08997 * 109.47302 * 174.99738 * 12 9 8 40 40 H 1.09007 * 109.46917 * 55.00273 * 12 9 8 41 41 H 1.09009 * 109.47238 * 59.99946 * 15 13 12 42 42 H 1.08997 * 109.47293 * 179.97438 * 15 13 12 43 43 H 1.09003 * 109.47189 * 300.00067 * 15 13 12 44 44 H 0.97001 * 120.00384 * 335.00737 * 16 13 12 45 45 H 1.08998 * 109.46954 * 300.00581 * 19 17 16 46 46 H 1.09002 * 109.46946 * 59.99717 * 19 17 16 47 47 H 0.96991 * 119.99795 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3006 1.0856 0.0000 4 6 3.5431 0.6947 0.0006 5 8 3.5733 -0.6447 0.0068 6 6 2.2996 -1.0845 -0.0005 7 6 1.8492 -2.5226 -0.0017 8 7 1.7033 -2.9890 -1.3870 9 6 1.2638 -4.3901 -1.4273 10 1 0.5855 -4.5822 -0.5959 11 6 2.4813 -5.3099 -1.3152 12 6 0.5406 -4.6600 -2.7483 13 6 -0.7441 -3.8310 -2.8050 14 1 -0.5051 -2.7792 -2.6473 15 6 -1.4029 -4.0044 -4.1750 16 7 -1.6646 -4.2847 -1.7596 17 6 -2.5952 -3.4422 -1.2690 18 8 -2.6739 -2.3100 -1.6967 19 6 -3.5381 -3.9069 -0.1892 20 16 -4.6602 -2.5576 0.2538 21 6 -5.6215 -3.3548 1.4968 22 1 -5.4171 -4.3816 1.7620 23 6 -6.6409 -2.6628 2.1360 24 7 -6.8898 -1.4112 1.8132 25 14 -7.6606 -3.5081 3.4532 26 1 -6.7736 -3.9447 4.5614 27 1 -8.6773 -2.5605 3.9764 28 1 -8.3416 -4.6912 2.8688 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8901 -0.5139 31 1 -0.3634 -0.8899 -0.5138 32 1 4.4066 1.3433 0.0003 33 1 0.8911 -2.6037 0.5118 34 1 2.5897 -3.1358 0.5121 35 1 1.0701 -2.3967 -1.9031 36 1 3.1595 -5.1178 -2.1466 37 1 2.9965 -5.1177 -0.3740 38 1 2.1552 -6.3495 -1.3456 39 1 0.2929 -5.7192 -2.8171 40 1 1.1884 -4.3836 -3.5802 41 1 -1.6419 -5.0562 -4.3327 42 1 -2.3183 -3.4141 -4.2152 43 1 -0.7180 -3.6668 -4.9528 44 1 -1.6017 -5.1902 -1.4175 45 1 -4.1170 -4.7559 -0.5529 46 1 -2.9657 -4.2070 0.6886 47 1 -7.6024 -0.9278 2.2597 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133735301.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:47 Heat of formation + Delta-G solvation = -54.302160 kcal Electronic energy + Delta-G solvation = -27850.225431 eV Core-core repulsion = 23966.402319 eV Total energy + Delta-G solvation = -3883.823111 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.33103 -40.88316 -38.86601 -36.43524 -36.08858 -34.57822 -33.88308 -32.58215 -31.23101 -29.94239 -28.74702 -27.73222 -27.63673 -25.83126 -23.21550 -22.90182 -21.85957 -21.67605 -21.15308 -19.82583 -18.19792 -17.90887 -17.71474 -17.25957 -17.11966 -16.87227 -16.32626 -16.29334 -15.85050 -15.75376 -15.29524 -14.79379 -14.63081 -14.44525 -14.30604 -14.28396 -14.05108 -13.62949 -13.53247 -13.37877 -13.17784 -13.14785 -13.07836 -12.87235 -12.84172 -12.70633 -12.60527 -12.24702 -12.05223 -11.90584 -11.72328 -11.53648 -11.46529 -11.12579 -10.85554 -10.25196 -10.09305 -9.80565 -9.48100 -8.63883 -8.34084 -6.10991 0.42188 1.28048 1.42879 1.47313 1.57075 1.63710 1.67121 1.79322 2.26855 2.34439 3.00059 3.14139 3.28045 3.34075 3.63201 3.73208 3.80566 3.88094 4.04044 4.07082 4.19203 4.30887 4.33916 4.42463 4.49564 4.52576 4.58343 4.60242 4.63235 4.74614 4.78456 4.83204 4.93868 4.96433 5.02089 5.07127 5.11632 5.21479 5.31448 5.37219 5.41905 5.46547 5.57159 5.93485 6.19746 6.20795 6.56480 6.71621 7.07522 7.31115 8.74507 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009958 B = 0.003094 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.031637 B = 9047.120428 C =10653.655963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.024 4.024 3 N -0.526 5.526 4 C 0.186 3.814 5 O -0.202 6.202 6 C -0.044 4.044 7 C 0.149 3.851 8 N -0.682 5.682 9 C 0.080 3.920 10 H 0.048 0.952 11 C -0.135 4.135 12 C -0.117 4.117 13 C 0.138 3.862 14 H 0.062 0.938 15 C -0.159 4.159 16 N -0.708 5.708 17 C 0.535 3.465 18 O -0.558 6.558 19 C -0.132 4.132 20 S -0.144 6.144 21 C -0.548 4.548 22 H 0.081 0.919 23 C 0.015 3.985 24 N -0.910 5.910 25 Si 0.994 3.006 26 H -0.262 1.262 27 H -0.280 1.280 28 H -0.262 1.262 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.297 0.703 33 H 0.060 0.940 34 H 0.104 0.896 35 H 0.339 0.661 36 H 0.060 0.940 37 H 0.049 0.951 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.074 0.926 42 H 0.030 0.970 43 H 0.081 0.919 44 H 0.414 0.586 45 H 0.105 0.895 46 H 0.106 0.894 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.207 -9.798 -7.189 26.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.143 4.143 3 N -0.255 5.255 4 C -0.040 4.040 5 O -0.088 6.088 6 C -0.098 4.098 7 C 0.020 3.980 8 N -0.316 5.316 9 C -0.029 4.029 10 H 0.066 0.934 11 C -0.193 4.193 12 C -0.154 4.154 13 C 0.034 3.966 14 H 0.080 0.920 15 C -0.217 4.217 16 N -0.363 5.363 17 C 0.320 3.680 18 O -0.436 6.436 19 C -0.283 4.283 20 S 0.084 5.916 21 C -0.696 4.696 22 H 0.099 0.901 23 C -0.190 4.190 24 N -0.547 5.547 25 Si 0.816 3.184 26 H -0.187 1.187 27 H -0.205 1.205 28 H -0.187 1.187 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.312 0.688 33 H 0.078 0.922 34 H 0.122 0.878 35 H 0.159 0.841 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.094 0.906 39 H 0.123 0.877 40 H 0.116 0.884 41 H 0.093 0.907 42 H 0.049 0.951 43 H 0.099 0.901 44 H 0.251 0.749 45 H 0.123 0.877 46 H 0.124 0.876 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 23.496 -7.358 -7.961 25.876 hybrid contribution -1.571 -1.783 1.679 2.910 sum 21.925 -9.140 -6.281 24.570 Atomic orbital electron populations 1.19995 0.86625 1.03011 1.02693 1.21672 0.97967 0.88456 1.06248 1.70344 1.02880 1.32470 1.19843 1.29094 0.97925 0.79268 0.97700 1.84434 1.29609 1.25159 1.69623 1.23156 0.80816 0.97767 1.08049 1.20264 1.00347 0.85629 0.91804 1.60720 1.55312 1.04148 1.11447 1.21665 0.96303 0.87264 0.97652 0.93368 1.21767 0.96896 0.98550 1.02066 1.22063 0.93588 1.01675 0.98121 1.21073 0.89333 0.99005 0.87237 0.91959 1.22124 1.00619 1.02667 0.96323 1.45897 1.33811 1.16130 1.40414 1.19979 0.80870 0.85128 0.82004 1.90704 1.71114 1.20988 1.60782 1.23391 1.00383 1.03925 1.00643 1.85547 1.38422 1.18074 1.49603 1.23182 1.20705 1.01444 1.24275 0.90072 1.26076 0.97819 0.95490 0.99586 1.70170 1.31170 1.10880 1.42469 0.85065 0.77586 0.78032 0.77714 1.18673 1.20511 1.18698 0.91049 0.91442 0.91314 0.68814 0.92199 0.87815 0.84110 0.92053 0.93198 0.90625 0.87735 0.88360 0.90708 0.95089 0.90056 0.74896 0.87682 0.87573 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.03 10.05 71.24 0.72 -1.31 16 2 C -0.02 -0.69 7.11 41.26 0.29 -0.40 16 3 N -0.53 -14.60 11.29 -304.07 -3.43 -18.04 16 4 C 0.19 3.58 13.23 130.48 1.73 5.31 16 5 O -0.20 -4.49 10.78 -3.76 -0.04 -4.53 16 6 C -0.04 -1.09 6.90 24.79 0.17 -0.92 16 7 C 0.15 2.99 5.64 85.56 0.48 3.47 16 8 N -0.68 -12.44 6.30 -495.57 -3.12 -15.56 16 9 C 0.08 1.08 2.59 44.92 0.12 1.20 16 10 H 0.05 0.71 7.28 -2.39 -0.02 0.70 16 11 C -0.13 -1.47 9.42 71.98 0.68 -0.79 16 12 C -0.12 -1.32 4.34 30.59 0.13 -1.19 16 13 C 0.14 2.57 2.48 44.99 0.11 2.69 16 14 H 0.06 1.51 5.72 -2.39 -0.01 1.50 16 15 C -0.16 -2.95 9.49 71.98 0.68 -2.27 16 16 N -0.71 -15.16 4.45 -442.53 -1.97 -17.12 16 17 C 0.53 17.98 7.82 87.66 0.69 18.66 16 18 O -0.56 -23.87 15.52 -3.04 -0.05 -23.92 16 19 C -0.13 -4.96 6.16 71.24 0.44 -4.52 16 20 S -0.14 -7.75 20.57 -56.49 -1.16 -8.91 16 21 C -0.55 -30.84 9.50 67.96 0.65 -30.19 16 22 H 0.08 4.23 7.80 -2.91 -0.02 4.21 16 23 C 0.02 0.86 5.49 84.86 0.47 1.32 16 24 N -0.91 -55.63 13.22 21.65 0.29 -55.34 16 25 Si 0.99 43.24 29.55 68.60 2.03 45.27 16 26 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 27 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 28 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 29 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 31 H 0.07 2.15 7.79 -2.39 -0.02 2.13 16 32 H 0.30 1.98 8.06 -2.91 -0.02 1.96 16 33 H 0.06 1.30 7.71 -2.39 -0.02 1.29 16 34 H 0.10 1.78 7.44 -2.39 -0.02 1.77 16 35 H 0.34 7.22 6.40 -89.69 -0.57 6.65 16 36 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.05 0.60 7.45 -2.39 -0.02 0.58 16 38 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 42 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.41 6.15 8.60 -92.71 -0.80 5.36 16 45 H 0.10 3.59 8.14 -2.40 -0.02 3.58 16 46 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 47 H 0.27 15.43 8.31 -92.72 -0.77 14.66 16 Total: -1.00 -79.72 405.33 -0.50 -80.22 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: -0.39 Total: 26.86 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: 7.35 Total: -8.93 kcal Atomic # 7 Polarization: -97.82 SS G_CDS: -8.24 Total: -106.06 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -0.09 Total: -28.44 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: -7.75 SS G_CDS: -1.16 Total: -8.91 kcal Total: -79.72 -0.50 -80.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133735301.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.920 kcal (2) G-P(sol) polarization free energy of solvation -79.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds