Wall clock time and date at job start Sat Apr 11 2020 06:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35455 * 126.78178 * 2 1 4 4 C 1.41371 * 103.99033 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.80322 * 180.02562 * 4 3 2 6 6 N 1.46898 * 109.47456 * 94.99677 * 5 4 3 7 7 C 1.46899 * 111.00227 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.46916 * 34.99914 * 7 6 5 9 9 C 1.53007 * 109.47037 * 275.00321 * 7 6 5 10 10 C 1.52997 * 109.47315 * 155.00148 * 7 6 5 11 11 C 1.52999 * 109.47080 * 295.00275 * 10 7 6 12 12 H 1.09004 * 109.47434 * 54.99895 * 11 10 7 13 13 C 1.52997 * 109.47114 * 174.99701 * 11 10 7 14 14 N 1.46498 * 109.46963 * 294.99494 * 11 10 7 15 15 C 1.34777 * 119.99828 * 154.72290 * 14 11 10 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 11 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 11 18 18 S 1.81000 * 109.47389 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99715 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00516 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99710 * 179.97438 * 19 18 17 22 22 N 1.31634 * 120.00163 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00011 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47098 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.47081 * 120.00118 * 23 21 19 26 26 H 1.48496 * 109.47496 * 240.00528 * 23 21 19 27 27 N 1.30181 * 106.39648 * 0.26054 * 4 3 2 28 28 O 1.20919 * 111.60146 * 359.53392 * 27 4 3 29 29 H 1.09000 * 109.47433 * 90.00117 * 1 2 3 30 30 H 1.09000 * 109.47170 * 209.99852 * 1 2 3 31 31 H 1.08997 * 109.47045 * 330.00144 * 1 2 3 32 32 H 1.08003 * 127.99905 * 359.94251 * 3 2 1 33 33 H 1.09000 * 109.47028 * 334.99680 * 5 4 3 34 34 H 1.09004 * 109.47383 * 215.00246 * 5 4 3 35 35 H 1.00900 * 111.00199 * 303.96089 * 6 5 4 36 36 H 1.09002 * 109.46936 * 299.99582 * 9 7 6 37 37 H 1.09000 * 109.46920 * 60.00241 * 9 7 6 38 38 H 1.08997 * 109.46639 * 180.02562 * 9 7 6 39 39 H 1.08997 * 109.47302 * 174.99738 * 10 7 6 40 40 H 1.09007 * 109.46917 * 55.00273 * 10 7 6 41 41 H 1.09009 * 109.47238 * 59.99946 * 13 11 10 42 42 H 1.08997 * 109.47293 * 179.97438 * 13 11 10 43 43 H 1.09003 * 109.47189 * 300.00067 * 13 11 10 44 44 H 0.97001 * 120.00384 * 335.00737 * 14 11 10 45 45 H 1.08998 * 109.46954 * 300.00581 * 17 15 14 46 46 H 1.09002 * 109.46946 * 59.99717 * 17 15 14 47 47 H 0.96991 * 119.99795 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6213 0.5373 0.0006 5 6 4.9210 1.3000 0.0014 6 7 5.4038 1.4436 1.3814 7 6 6.6716 2.1844 1.4212 8 1 6.6704 2.9487 0.6441 9 6 7.8344 1.2184 1.1846 10 6 6.8312 2.8490 2.7900 11 6 5.7395 3.9049 2.9747 12 1 4.7618 3.4467 2.8253 13 6 5.8217 4.4815 4.3894 14 7 5.9295 4.9797 1.9975 15 6 4.8796 5.7296 1.6080 16 8 3.7784 5.5180 2.0702 17 6 5.0737 6.8313 0.5981 18 16 3.4896 7.6490 0.2851 19 6 3.9962 8.8559 -0.8945 20 1 5.0299 8.9094 -1.2025 21 6 3.0663 9.7372 -1.4287 22 7 1.8062 9.6716 -1.0537 23 14 3.6034 11.0172 -2.6787 24 1 5.0610 10.8834 -2.9291 25 1 2.8624 10.8101 -3.9489 26 1 3.3138 12.3752 -2.1523 27 7 3.4763 -0.7565 -0.0048 28 8 2.3095 -1.0737 0.0007 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 2.0345 2.1270 -0.0009 33 1 4.7633 2.2872 -0.4329 34 1 5.6608 0.7579 -0.5878 35 1 4.7084 1.8859 1.9635 36 1 7.8356 0.4540 1.9617 37 1 7.7207 0.7450 0.2094 38 1 8.7751 1.7680 1.2146 39 1 7.8103 3.3240 2.8513 40 1 6.7436 2.0951 3.5724 41 1 6.7995 4.9397 4.5388 42 1 5.0443 5.2340 4.5208 43 1 5.6804 3.6817 5.1165 44 1 6.8101 5.1490 1.6278 45 1 5.7871 7.5583 0.9862 46 1 5.4550 6.4088 -0.3316 47 1 1.1566 10.2877 -1.4268 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133735717.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:10 Heat of formation + Delta-G solvation = 9.041896 kcal Electronic energy + Delta-G solvation = -27333.846392 eV Core-core repulsion = 23452.770085 eV Total energy + Delta-G solvation = -3881.076307 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.97958 -39.70952 -37.94300 -35.58606 -34.17432 -33.42528 -32.47121 -31.70028 -30.64325 -28.58797 -27.91570 -27.18984 -25.83011 -25.52297 -23.03990 -21.95906 -20.79429 -20.23309 -20.16040 -17.89479 -17.70520 -17.25983 -16.58661 -16.29714 -16.11599 -15.45900 -14.94435 -14.84339 -14.58207 -14.24363 -14.10639 -13.90217 -13.45345 -13.41422 -13.35414 -13.17771 -12.94196 -12.79152 -12.64082 -12.41172 -12.35398 -12.22081 -12.00957 -11.88200 -11.51567 -11.15372 -11.10434 -11.08555 -11.05721 -10.79825 -10.73966 -10.24577 -9.84619 -9.43360 -9.38987 -9.12061 -8.98944 -8.65810 -8.28547 -6.54731 -6.26283 -3.96834 1.38824 2.10696 2.99048 3.01995 3.03680 3.18228 3.25242 3.29723 3.67097 3.89283 4.12421 4.16305 4.37041 4.42529 4.60529 4.88562 4.93955 5.04537 5.06867 5.09275 5.12122 5.19349 5.19803 5.24235 5.33297 5.35133 5.44165 5.45174 5.54262 5.60503 5.64049 5.64875 5.67227 5.72284 5.80831 5.83044 5.98377 5.99010 6.06449 6.08578 6.16827 6.60682 6.74762 7.11266 7.55720 7.66338 8.20770 8.31088 8.56220 9.19553 10.81164 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008687 B = 0.002977 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3222.404396 B = 9402.680202 C =11345.018203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.035 4.035 3 C -0.226 4.226 4 C 0.023 3.977 5 C 0.138 3.862 6 N -0.678 5.678 7 C 0.083 3.917 8 H 0.052 0.948 9 C -0.140 4.140 10 C -0.129 4.129 11 C 0.139 3.861 12 H 0.085 0.915 13 C -0.163 4.163 14 N -0.734 5.734 15 C 0.532 3.468 16 O -0.517 6.517 17 C -0.154 4.154 18 S -0.059 6.059 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.279 1.279 27 N -0.352 5.352 28 O 0.096 5.904 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.174 0.826 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.346 0.654 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.056 0.944 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.397 0.603 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.214 -18.403 5.280 20.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.099 4.099 3 C -0.248 4.248 4 C -0.137 4.137 5 C 0.008 3.992 6 N -0.313 5.313 7 C -0.027 4.027 8 H 0.069 0.931 9 C -0.198 4.198 10 C -0.167 4.167 11 C 0.033 3.967 12 H 0.103 0.897 13 C -0.221 4.221 14 N -0.389 5.389 15 C 0.318 3.682 16 O -0.391 6.391 17 C -0.305 4.305 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.744 3.256 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.205 1.205 27 N -0.055 5.055 28 O 0.029 5.971 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.191 0.809 33 H 0.076 0.924 34 H 0.106 0.894 35 H 0.166 0.834 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.231 0.769 45 H 0.107 0.893 46 H 0.106 0.894 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.352 -20.333 6.040 22.142 hybrid contribution 1.387 2.944 -1.707 3.675 sum 7.739 -17.389 4.332 19.520 Atomic orbital electron populations 1.20345 0.83961 1.04713 1.04144 1.24496 0.96405 0.86061 1.02902 1.22595 0.91410 1.01456 1.09368 1.23351 0.96840 0.90056 1.03406 1.20188 0.90245 0.97437 0.91325 1.60589 1.06025 1.55497 1.09196 1.21546 0.90065 0.94118 0.96965 0.93051 1.21798 0.96415 0.99406 1.02153 1.22111 0.99176 0.97763 0.97690 1.20941 0.99585 0.87345 0.88785 0.89731 1.22161 1.02476 1.01730 0.95729 1.46153 1.11620 1.35468 1.45667 1.20311 0.84086 0.82037 0.81752 1.90696 1.24471 1.68467 1.55493 1.23543 1.08133 0.99099 0.99739 1.85360 1.03355 1.38949 1.55600 1.22907 0.97634 1.19627 1.28220 0.90929 1.24986 0.94499 0.97245 0.96795 1.70021 1.01648 1.36689 1.41907 0.86128 0.78749 0.80422 0.80274 1.19620 1.20541 1.20531 1.73827 0.96688 1.16365 1.18669 1.84812 1.11414 1.33343 1.67562 0.89407 0.89962 0.88785 0.80875 0.92417 0.89391 0.83384 0.91946 0.92785 0.92463 0.90375 0.89469 0.92516 0.91657 0.91848 0.76949 0.89299 0.89446 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.45 36.00 0.38 -0.12 16 2 C -0.04 -0.38 7.49 -35.31 -0.26 -0.64 16 3 C -0.23 -2.73 11.06 -39.38 -0.44 -3.17 16 4 C 0.02 0.29 6.84 -82.10 -0.56 -0.27 16 5 C 0.14 1.59 6.07 -4.98 -0.03 1.56 16 6 N -0.68 -7.31 6.30 -107.99 -0.68 -7.99 16 7 C 0.08 0.74 2.59 -67.71 -0.18 0.57 16 8 H 0.05 0.50 7.28 -51.93 -0.38 0.12 16 9 C -0.14 -1.14 9.42 37.16 0.35 -0.79 16 10 C -0.13 -1.03 4.34 -26.73 -0.12 -1.15 16 11 C 0.14 1.48 2.48 -67.93 -0.17 1.31 16 12 H 0.08 1.07 5.72 -51.93 -0.30 0.78 16 13 C -0.16 -1.69 9.49 37.16 0.35 -1.34 16 14 N -0.73 -8.89 4.45 -53.81 -0.24 -9.13 16 15 C 0.53 9.25 7.82 -10.98 -0.09 9.17 16 16 O -0.52 -10.95 15.52 5.55 0.09 -10.87 16 17 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 18 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 19 C -0.54 -14.98 9.50 30.94 0.29 -14.69 16 20 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -25.70 13.22 55.49 0.73 -24.97 16 23 Si 0.92 21.10 29.55 -169.99 -5.02 16.08 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 N -0.35 -4.90 12.07 33.42 0.40 -4.50 16 28 O 0.10 1.21 11.20 17.16 0.19 1.40 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.17 2.02 8.06 -52.48 -0.42 1.60 16 33 H 0.06 0.68 8.05 -51.93 -0.42 0.26 16 34 H 0.09 0.98 7.44 -51.93 -0.39 0.59 16 35 H 0.35 3.98 6.40 -39.29 -0.25 3.73 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.05 0.47 7.45 -51.93 -0.39 0.08 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.40 3.80 8.60 -40.82 -0.35 3.45 16 45 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 46 H 0.09 1.57 8.14 -51.92 -0.42 1.14 16 47 H 0.27 7.36 8.31 -40.82 -0.34 7.03 16 LS Contribution 406.21 15.07 6.12 6.12 Total: -1.00 -34.21 406.21 -8.47 -42.67 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -7.51 Total: 5.31 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -0.34 Total: -10.36 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: 0.22 Total: -46.59 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.28 Total: -9.47 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.21 -8.47 -42.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133735717.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.715 kcal (2) G-P(sol) polarization free energy of solvation -34.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds