Wall clock time and date at job start Sat Apr 11 2020 06:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35453 * 126.77605 * 2 1 4 4 C 1.41380 * 103.98805 * 180.09937 * 3 2 1 5 5 C 1.50695 * 126.80208 * 179.89335 * 4 3 2 6 6 N 1.46905 * 109.47281 * 94.71235 * 5 4 3 7 7 C 1.46896 * 110.99847 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47768 * 35.39731 * 7 6 5 9 9 C 1.53000 * 109.46998 * 275.39642 * 7 6 5 10 10 C 1.53006 * 109.46862 * 155.39800 * 7 6 5 11 11 C 1.53004 * 109.46863 * 185.89730 * 10 7 6 12 12 H 1.09000 * 109.46980 * 304.48702 * 11 10 7 13 13 C 1.52999 * 109.46831 * 184.49251 * 11 10 7 14 14 N 1.46497 * 109.47535 * 64.49097 * 11 10 7 15 15 C 1.34775 * 120.00201 * 205.77740 * 14 11 10 16 16 O 1.21279 * 119.99670 * 359.97438 * 15 14 11 17 17 C 1.50694 * 119.99976 * 180.02562 * 15 14 11 18 18 S 1.80999 * 109.47254 * 179.97438 * 17 15 14 19 19 C 1.76201 * 100.00318 * 179.97438 * 18 17 15 20 20 H 1.07995 * 119.99727 * 0.02562 * 19 18 17 21 21 C 1.38795 * 119.99874 * 180.02562 * 19 18 17 22 22 N 1.31636 * 119.99545 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 120.00400 * 359.97438 * 21 19 18 24 24 H 1.48507 * 109.47075 * 90.00104 * 23 21 19 25 25 H 1.48498 * 109.47409 * 210.00252 * 23 21 19 26 26 H 1.48503 * 109.47282 * 330.00572 * 23 21 19 27 27 N 1.30174 * 106.39280 * 359.62630 * 4 3 2 28 28 O 1.20921 * 111.60496 * 0.24327 * 27 4 3 29 29 H 1.09001 * 109.46912 * 180.29261 * 1 2 3 30 30 H 1.08996 * 109.47599 * 300.29620 * 1 2 3 31 31 H 1.09006 * 109.47359 * 60.29720 * 1 2 3 32 32 H 1.08000 * 128.00533 * 359.97104 * 3 2 1 33 33 H 1.08997 * 109.47274 * 334.70976 * 5 4 3 34 34 H 1.09008 * 109.46988 * 214.70770 * 5 4 3 35 35 H 1.00903 * 110.99366 * 303.95148 * 6 5 4 36 36 H 1.09005 * 109.46852 * 180.02562 * 9 7 6 37 37 H 1.08998 * 109.46944 * 300.00091 * 9 7 6 38 38 H 1.08996 * 109.47187 * 60.00483 * 9 7 6 39 39 H 1.08995 * 109.47081 * 305.89201 * 10 7 6 40 40 H 1.09000 * 109.47384 * 65.89749 * 10 7 6 41 41 H 1.09000 * 109.46767 * 179.97438 * 13 11 10 42 42 H 1.08998 * 109.47485 * 299.99973 * 13 11 10 43 43 H 1.09005 * 109.47228 * 59.99652 * 13 11 10 44 44 H 0.97004 * 119.99461 * 25.77444 * 14 11 10 45 45 H 1.09008 * 109.46786 * 299.99319 * 17 15 14 46 46 H 1.08996 * 109.47414 * 59.99473 * 17 15 14 47 47 H 0.96998 * 119.99791 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6214 0.5374 -0.0024 5 6 4.9210 1.3002 -0.0056 6 7 5.4039 1.4508 1.3736 7 6 6.6723 2.1909 1.4093 8 1 6.6689 2.9557 0.6327 9 6 7.8336 1.2244 1.1681 10 6 6.8370 2.8546 2.7780 11 6 8.0823 3.7435 2.7671 12 1 8.9487 3.1516 2.4720 13 6 8.3105 4.3188 4.1664 14 7 7.8919 4.8394 1.8137 15 6 8.9606 5.4275 1.2406 16 8 10.0800 5.0497 1.5146 17 6 8.7646 6.5551 0.2603 18 16 10.3768 7.1296 -0.3285 19 6 9.8636 8.4087 -1.4264 20 1 8.8123 8.6192 -1.5562 21 6 10.8104 9.1457 -2.1241 22 7 10.4269 10.1016 -2.9439 23 14 12.6287 8.7821 -1.8990 24 1 13.0558 7.7615 -2.8897 25 1 13.4115 10.0275 -2.1024 26 1 12.8644 8.2679 -0.5259 27 7 3.4764 -0.7563 0.0046 28 8 2.3096 -1.0735 0.0060 29 1 -0.3633 -1.0277 0.0052 30 1 -0.3634 0.5184 0.8873 31 1 -0.3634 0.5092 -0.8927 32 1 2.0344 2.1271 -0.0004 33 1 4.7631 2.2851 -0.4450 34 1 5.6608 0.7550 -0.5920 35 1 4.7085 1.8962 1.9534 36 1 8.7748 1.7734 1.1951 37 1 7.8370 0.4596 1.9448 38 1 7.7162 0.7515 0.1931 39 1 5.9587 3.4625 2.9951 40 1 6.9457 2.0865 3.5437 41 1 9.1979 4.9517 4.1587 42 1 7.4442 4.9107 4.4617 43 1 8.4522 3.5034 4.8758 44 1 6.9965 5.1417 1.5949 45 1 8.1731 6.2030 -0.5849 46 1 8.2435 7.3769 0.7513 47 1 11.0885 10.6169 -3.4313 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133735718.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:16 Heat of formation + Delta-G solvation = 9.913779 kcal Electronic energy + Delta-G solvation = -26526.384962 eV Core-core repulsion = 22645.346462 eV Total energy + Delta-G solvation = -3881.038499 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.25911 -39.73861 -38.02887 -35.89127 -34.38412 -33.66965 -32.45828 -31.91975 -30.42737 -28.68501 -28.21466 -27.25852 -26.06212 -25.62878 -23.34974 -22.07710 -20.89209 -20.45436 -20.17842 -17.97347 -17.89190 -17.53039 -16.62395 -16.40076 -16.19718 -15.37349 -15.06538 -14.95927 -14.89239 -14.59997 -14.23462 -13.99505 -13.75873 -13.55907 -13.43325 -13.34771 -13.10667 -12.91174 -12.81175 -12.57366 -12.53246 -12.10159 -12.06125 -11.85812 -11.59380 -11.32770 -11.27661 -11.03464 -11.02352 -10.92828 -10.61400 -10.46796 -9.87234 -9.68681 -9.51673 -9.04294 -8.98879 -8.84597 -8.51904 -6.93568 -6.30822 -4.02547 1.11336 1.82427 2.74533 2.75207 2.96217 3.29612 3.33191 3.49174 3.63646 3.64550 3.88124 4.10941 4.31525 4.46720 4.61223 4.63469 4.70203 4.72601 4.81831 4.87043 4.88180 5.08272 5.09419 5.11504 5.14042 5.18927 5.24052 5.32492 5.35722 5.43829 5.51053 5.60814 5.61035 5.67004 5.70264 5.73545 5.79495 5.93345 5.98263 6.12889 6.18575 6.57896 6.59615 6.94954 7.59796 7.92252 7.96234 8.39397 8.48594 9.15426 10.78393 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013577 B = 0.002025 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.847047 B =13823.731640 C =15051.716818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.034 4.034 3 C -0.233 4.233 4 C 0.022 3.978 5 C 0.136 3.864 6 N -0.679 5.679 7 C 0.084 3.916 8 H 0.053 0.947 9 C -0.143 4.143 10 C -0.126 4.126 11 C 0.143 3.857 12 H 0.094 0.906 13 C -0.163 4.163 14 N -0.732 5.732 15 C 0.532 3.468 16 O -0.518 6.518 17 C -0.125 4.125 18 S -0.141 6.141 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 N -0.347 5.347 28 O 0.100 5.900 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.170 0.830 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.342 0.658 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.063 0.937 44 H 0.396 0.604 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.679 -19.107 10.555 30.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.098 4.098 3 C -0.255 4.255 4 C -0.137 4.137 5 C 0.007 3.993 6 N -0.312 5.312 7 C -0.025 4.025 8 H 0.070 0.930 9 C -0.201 4.201 10 C -0.164 4.164 11 C 0.037 3.963 12 H 0.112 0.888 13 C -0.222 4.222 14 N -0.387 5.387 15 C 0.317 3.683 16 O -0.393 6.393 17 C -0.275 4.275 18 S 0.085 5.915 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.114 4.114 22 N -0.517 5.517 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 N -0.050 5.050 28 O 0.032 5.968 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.187 0.813 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.160 0.840 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.230 0.770 45 H 0.113 0.887 46 H 0.114 0.886 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.575 -21.250 10.893 29.650 hybrid contribution -1.722 2.424 -0.789 3.077 sum -19.298 -18.825 10.104 28.790 Atomic orbital electron populations 1.20347 0.84023 1.04725 1.04146 1.24518 0.96433 0.86234 1.02600 1.22436 0.91463 1.01050 1.10554 1.23409 0.96791 0.90106 1.03388 1.20224 0.90330 0.97358 0.91433 1.60478 1.05767 1.55778 1.09165 1.21557 0.89641 0.94296 0.97029 0.92952 1.21856 0.97000 0.99257 1.02005 1.22062 0.97898 0.98930 0.97538 1.20944 0.98464 0.87733 0.89116 0.88805 1.22178 1.02521 1.01548 0.95937 1.46090 1.09216 1.37267 1.46095 1.20256 0.84512 0.82833 0.80652 1.90697 1.23644 1.63145 1.61770 1.23284 1.05190 0.98750 1.00316 1.84796 1.05509 1.44765 1.56390 1.22314 0.97432 1.19173 1.28007 0.89439 1.24719 0.99394 0.93673 0.93565 1.69941 1.34952 1.20564 1.26229 0.86731 0.84606 0.78802 0.81688 1.19200 1.19933 1.15923 1.73878 0.96514 1.16447 1.18147 1.84861 1.11425 1.33281 1.67236 0.89865 0.89146 0.89127 0.81263 0.92524 0.89064 0.84009 0.91724 0.91946 0.92836 0.91429 0.89490 0.91657 0.92605 0.91813 0.77019 0.88698 0.88574 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.20 10.45 36.00 0.38 0.17 16 2 C -0.03 -0.24 7.49 -35.30 -0.26 -0.50 16 3 C -0.23 -1.69 11.06 -39.38 -0.44 -2.13 16 4 C 0.02 0.22 6.84 -82.10 -0.56 -0.35 16 5 C 0.14 1.19 6.07 -4.98 -0.03 1.16 16 6 N -0.68 -5.69 6.30 -107.99 -0.68 -6.37 16 7 C 0.08 0.72 2.63 -67.71 -0.18 0.54 16 8 H 0.05 0.49 7.24 -51.93 -0.38 0.11 16 9 C -0.14 -1.43 9.19 37.16 0.34 -1.09 16 10 C -0.13 -0.95 4.27 -26.73 -0.11 -1.07 16 11 C 0.14 1.47 2.46 -67.93 -0.17 1.30 16 12 H 0.09 1.17 5.81 -51.93 -0.30 0.87 16 13 C -0.16 -1.63 9.49 37.16 0.35 -1.28 16 14 N -0.73 -8.59 4.40 -53.81 -0.24 -8.83 16 15 C 0.53 9.02 7.82 -10.99 -0.09 8.93 16 16 O -0.52 -10.80 15.51 5.56 0.09 -10.71 16 17 C -0.12 -2.35 6.16 36.00 0.22 -2.13 16 18 S -0.14 -3.54 18.55 -107.50 -1.99 -5.53 16 19 C -0.52 -14.93 10.04 30.94 0.31 -14.62 16 20 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 21 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 22 N -0.88 -26.46 13.97 55.49 0.78 -25.68 16 23 Si 0.86 21.74 27.74 -169.99 -4.71 17.03 16 24 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 26 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 27 N -0.35 -3.98 12.07 33.42 0.40 -3.58 16 28 O 0.10 0.98 11.20 17.18 0.19 1.17 16 29 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.06 0.43 8.06 -51.93 -0.42 0.01 16 34 H 0.09 0.89 7.41 -51.92 -0.38 0.51 16 35 H 0.34 2.44 8.27 -39.29 -0.32 2.12 16 36 H 0.06 0.71 6.50 -51.93 -0.34 0.37 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.55 7.43 -51.93 -0.39 0.17 16 39 H 0.07 0.42 8.00 -51.93 -0.42 0.00 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.40 3.59 8.61 -40.82 -0.35 3.24 16 45 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 46 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 47 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 403.30 15.07 6.08 6.08 Total: -1.00 -35.16 403.30 -7.94 -43.10 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -7.52 Total: 1.69 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -0.33 Total: -8.36 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: 0.26 Total: -44.46 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.28 Total: -9.54 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.03 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.53 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.16 -7.94 -43.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133735718.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.015 kcal (2) G-P(sol) polarization free energy of solvation -35.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds