Wall clock time and date at job start Sat Apr 11 2020 06:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35456 * 126.77851 * 2 1 4 4 C 1.41374 * 103.98370 * 180.09432 * 3 2 1 5 5 C 1.50703 * 126.80043 * 179.88628 * 4 3 2 6 6 N 1.46899 * 109.47107 * 94.70935 * 5 4 3 7 7 C 1.46904 * 111.00029 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.46835 * 325.00273 * 7 6 5 9 9 C 1.52997 * 109.46874 * 85.00270 * 7 6 5 10 10 C 1.53002 * 109.46992 * 205.00108 * 7 6 5 11 11 C 1.52997 * 109.46982 * 65.00259 * 10 7 6 12 12 H 1.09002 * 109.47251 * 304.99612 * 11 10 7 13 13 C 1.53001 * 109.46823 * 184.99573 * 11 10 7 14 14 N 1.46499 * 109.47207 * 65.00063 * 11 10 7 15 15 C 1.34774 * 119.99826 * 204.99982 * 14 11 10 16 16 O 1.21279 * 120.00352 * 359.97438 * 15 14 11 17 17 C 1.50700 * 119.99857 * 179.97438 * 15 14 11 18 18 S 1.81000 * 109.47058 * 179.97438 * 17 15 14 19 19 C 1.76208 * 99.99910 * 180.02562 * 18 17 15 20 20 H 1.07995 * 119.99794 * 359.97438 * 19 18 17 21 21 C 1.38799 * 119.99852 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00104 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00079 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46865 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47593 * 119.99729 * 23 21 19 26 26 H 1.48499 * 109.47310 * 240.00388 * 23 21 19 27 27 N 1.30174 * 106.39823 * 359.62700 * 4 3 2 28 28 O 1.20921 * 111.60323 * 0.23615 * 27 4 3 29 29 H 1.09001 * 109.47216 * 180.30571 * 1 2 3 30 30 H 1.09000 * 109.46849 * 300.30741 * 1 2 3 31 31 H 1.09002 * 109.46671 * 60.30023 * 1 2 3 32 32 H 1.07997 * 128.00208 * 359.95846 * 3 2 1 33 33 H 1.09002 * 109.47152 * 334.71022 * 5 4 3 34 34 H 1.09001 * 109.46980 * 214.71122 * 5 4 3 35 35 H 1.00902 * 111.00582 * 303.95889 * 6 5 4 36 36 H 1.09007 * 109.47280 * 59.99720 * 9 7 6 37 37 H 1.08997 * 109.47489 * 179.97438 * 9 7 6 38 38 H 1.09007 * 109.47004 * 300.00081 * 9 7 6 39 39 H 1.08995 * 109.46658 * 185.00246 * 10 7 6 40 40 H 1.09003 * 109.46922 * 304.99986 * 10 7 6 41 41 H 1.09002 * 109.47238 * 300.00046 * 13 11 10 42 42 H 1.09005 * 109.46941 * 60.00437 * 13 11 10 43 43 H 1.09000 * 109.47024 * 179.97438 * 13 11 10 44 44 H 0.97002 * 119.99935 * 24.99423 * 14 11 10 45 45 H 1.09003 * 109.47522 * 299.99977 * 17 15 14 46 46 H 1.09007 * 109.47210 * 59.99940 * 17 15 14 47 47 H 0.96998 * 120.00068 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5372 -0.0023 5 6 4.9211 1.2999 -0.0056 6 7 5.4039 1.4508 1.3736 7 6 6.6724 2.1908 1.4093 8 1 7.2659 1.9371 0.5309 9 6 6.3861 3.6937 1.4148 10 6 7.4468 1.8145 2.6741 11 6 7.8414 0.3377 2.6101 12 1 6.9507 -0.2697 2.4490 13 6 8.5057 -0.0702 3.9266 14 7 8.7803 0.1305 1.5047 15 6 8.8838 -1.0827 0.9270 16 8 8.2001 -2.0030 1.3224 17 6 9.8493 -1.2956 -0.2104 18 16 9.7566 -3.0156 -0.7664 19 6 10.9520 -2.9837 -2.0606 20 1 11.4785 -2.0683 -2.2868 21 6 11.2161 -4.1347 -2.7899 22 7 10.5732 -5.2500 -2.5151 23 14 12.4838 -4.1011 -4.1614 24 1 13.0603 -2.7368 -4.2692 25 1 13.5651 -5.0734 -3.8601 26 1 11.8336 -4.4660 -5.4456 27 7 3.4764 -0.7564 0.0048 28 8 2.3095 -1.0736 0.0062 29 1 -0.3634 -1.0277 0.0055 30 1 -0.3633 0.5186 0.8872 31 1 -0.3633 0.5092 -0.8927 32 1 2.0345 2.1270 -0.0006 33 1 4.7633 2.2848 -0.4451 34 1 5.6608 0.7547 -0.5919 35 1 4.7086 1.8963 1.9534 36 1 5.7926 3.9474 2.2932 37 1 7.3273 4.2429 1.4417 38 1 5.8344 3.9618 0.5137 39 1 8.3450 2.4278 2.7460 40 1 6.8192 1.9854 3.5487 41 1 9.3963 0.5372 4.0877 42 1 7.8071 0.0839 4.7491 43 1 8.7864 -1.1224 3.8812 44 1 9.3274 0.8666 1.1887 45 1 9.5906 -0.6322 -1.0357 46 1 10.8625 -1.0774 0.1273 47 1 10.7575 -6.0543 -3.0251 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133735719.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:23 Heat of formation + Delta-G solvation = 10.837249 kcal Electronic energy + Delta-G solvation = -27204.474036 eV Core-core repulsion = 23323.475581 eV Total energy + Delta-G solvation = -3880.998455 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.00844 -39.40147 -37.89593 -35.52855 -34.21397 -33.48402 -32.36889 -31.57463 -30.48126 -28.39246 -28.00547 -26.98593 -25.90033 -25.41878 -23.09891 -21.77026 -21.02010 -20.18921 -20.06129 -17.77165 -17.71725 -17.29431 -16.36335 -16.16259 -15.71877 -15.26739 -14.85431 -14.75237 -14.63260 -14.30791 -13.98569 -13.91325 -13.62785 -13.53949 -13.22888 -13.05834 -12.92683 -12.79435 -12.68178 -12.56465 -12.28975 -12.23356 -11.87342 -11.76229 -11.23483 -11.12183 -11.03483 -10.99496 -10.95095 -10.73600 -10.66898 -10.29274 -9.73417 -9.45625 -9.17581 -9.01849 -8.67103 -8.64021 -8.13198 -6.41397 -6.15526 -3.84938 1.37026 2.07067 2.99518 3.15940 3.24844 3.30649 3.32478 3.39268 3.83385 3.91139 4.11742 4.26220 4.31482 4.46320 4.73383 4.84981 4.88528 4.94580 5.01557 5.04084 5.15176 5.19227 5.23431 5.24811 5.30356 5.34129 5.36679 5.51359 5.55468 5.62031 5.64761 5.69665 5.72827 5.76839 5.86942 5.87841 5.90941 5.99099 6.22564 6.32355 6.44475 6.70828 6.91864 7.12734 7.65407 7.92361 8.26021 8.41298 8.83940 9.29544 10.91899 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009167 B = 0.002819 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3053.847422 B = 9929.118495 C =11802.338310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.039 4.039 3 C -0.235 4.235 4 C 0.016 3.984 5 C 0.140 3.860 6 N -0.672 5.672 7 C 0.083 3.917 8 H 0.084 0.916 9 C -0.183 4.183 10 C -0.112 4.112 11 C 0.147 3.853 12 H 0.102 0.898 13 C -0.164 4.164 14 N -0.733 5.733 15 C 0.531 3.469 16 O -0.512 6.512 17 C -0.153 4.153 18 S -0.059 6.059 19 C -0.534 4.534 20 H 0.072 0.928 21 C 0.072 3.928 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 N -0.332 5.332 28 O 0.107 5.893 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.167 0.833 33 H 0.052 0.948 34 H 0.092 0.908 35 H 0.340 0.660 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.050 0.950 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.392 0.608 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.757 21.843 9.085 28.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.103 4.103 3 C -0.257 4.257 4 C -0.143 4.143 5 C 0.010 3.990 6 N -0.303 5.303 7 C -0.027 4.027 8 H 0.102 0.898 9 C -0.242 4.242 10 C -0.151 4.151 11 C 0.042 3.958 12 H 0.120 0.880 13 C -0.222 4.222 14 N -0.388 5.388 15 C 0.317 3.683 16 O -0.386 6.386 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.682 4.682 20 H 0.090 0.910 21 C -0.137 4.137 22 N -0.502 5.502 23 Si 0.744 3.256 24 H -0.197 1.197 25 H -0.206 1.206 26 H -0.206 1.206 27 N -0.033 5.033 28 O 0.036 5.964 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.184 0.816 33 H 0.070 0.930 34 H 0.111 0.889 35 H 0.158 0.842 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.225 0.775 45 H 0.104 0.896 46 H 0.105 0.895 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.756 18.448 9.720 26.750 hybrid contribution 1.269 3.213 -1.704 3.852 sum -15.487 21.662 8.016 27.809 Atomic orbital electron populations 1.20316 0.84246 1.04727 1.03816 1.24516 0.96422 0.86456 1.02909 1.22344 0.91535 1.00723 1.11112 1.23368 0.96584 0.90177 1.04192 1.20158 0.90788 0.96814 0.91205 1.60422 1.05589 1.55049 1.09264 1.21621 0.91111 0.90389 0.99591 0.89777 1.22522 1.02430 0.97454 1.01767 1.21870 0.99540 0.95935 0.97712 1.20846 0.93396 0.95799 0.85714 0.87966 1.22197 1.00466 1.02505 0.97058 1.46080 1.43650 1.12219 1.36801 1.20207 0.83004 0.82164 0.82925 1.90710 1.43731 1.41117 1.63039 1.23530 1.00487 1.07754 0.98590 1.85452 1.54359 1.00948 1.42503 1.22914 1.25927 0.99292 1.20081 0.91012 1.24992 0.96622 0.94611 0.97450 1.70036 1.40092 1.00475 1.39643 0.86133 0.80423 0.78199 0.80825 1.19677 1.20590 1.20613 1.74035 0.96129 1.16322 1.16775 1.84926 1.11453 1.33166 1.66808 0.89831 0.89360 0.89346 0.81585 0.93040 0.88934 0.84151 0.92370 0.91748 0.92737 0.91262 0.90570 0.93045 0.92244 0.91880 0.77528 0.89646 0.89532 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.45 36.01 0.38 0.03 16 2 C -0.04 -0.37 7.49 -35.30 -0.26 -0.63 16 3 C -0.24 -2.18 11.06 -39.38 -0.44 -2.62 16 4 C 0.02 0.20 6.84 -82.10 -0.56 -0.36 16 5 C 0.14 1.53 6.07 -4.98 -0.03 1.50 16 6 N -0.67 -6.76 5.61 -107.99 -0.61 -7.37 16 7 C 0.08 0.71 2.53 -67.71 -0.17 0.53 16 8 H 0.08 0.83 7.28 -51.93 -0.38 0.46 16 9 C -0.18 -1.14 9.16 37.16 0.34 -0.80 16 10 C -0.11 -0.96 4.43 -26.73 -0.12 -1.08 16 11 C 0.15 1.86 2.52 -67.93 -0.17 1.69 16 12 H 0.10 1.67 7.06 -51.93 -0.37 1.30 16 13 C -0.16 -2.00 9.48 37.16 0.35 -1.65 16 14 N -0.73 -10.30 4.45 -53.81 -0.24 -10.54 16 15 C 0.53 10.48 7.81 -10.99 -0.09 10.39 16 16 O -0.51 -12.42 15.52 5.56 0.09 -12.33 16 17 C -0.15 -3.24 6.16 36.01 0.22 -3.01 16 18 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 19 C -0.53 -15.65 9.50 30.94 0.29 -15.36 16 20 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.87 13.22 55.49 0.73 -26.14 16 23 Si 0.92 21.94 29.55 -169.99 -5.02 16.92 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 N -0.33 -5.24 12.07 33.42 0.40 -4.83 16 28 O 0.11 1.43 11.20 17.18 0.19 1.63 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.05 0.44 7.44 -51.93 -0.39 0.05 16 34 H 0.09 1.25 8.05 -51.93 -0.42 0.83 16 35 H 0.34 2.90 8.47 -39.29 -0.33 2.57 16 36 H 0.06 0.33 8.13 -51.93 -0.42 -0.10 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.05 0.34 7.45 -51.92 -0.39 -0.05 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.39 4.31 8.60 -40.82 -0.35 3.96 16 45 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 46 H 0.09 1.70 8.14 -51.91 -0.42 1.27 16 47 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 408.72 15.07 6.16 6.16 Total: -1.00 -37.69 408.72 -8.51 -46.21 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -7.66 Total: 3.53 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -0.35 Total: -9.34 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: 0.29 Total: -48.88 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.28 Total: -10.70 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -37.69 -8.51 -46.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133735719.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.044 kcal (2) G-P(sol) polarization free energy of solvation -37.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds