Wall clock time and date at job start Sat Apr 11 2020 06:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35458 * 126.77809 * 2 1 4 4 C 1.41374 * 103.98946 * 179.97438 * 3 2 1 5 5 C 1.50695 * 126.80203 * 180.02562 * 4 3 2 6 6 N 1.46900 * 109.47318 * 95.00366 * 5 4 3 7 7 C 1.46893 * 111.00425 * 180.02562 * 6 5 4 8 8 H 1.09008 * 109.46811 * 323.25868 * 7 6 5 9 9 C 1.52999 * 109.47402 * 83.25846 * 7 6 5 10 10 C 1.53000 * 109.47352 * 203.25844 * 7 6 5 11 11 C 1.53003 * 109.47086 * 174.62319 * 10 7 6 12 12 H 1.08996 * 109.47170 * 54.54928 * 11 10 7 13 13 C 1.53004 * 109.46662 * 174.55004 * 11 10 7 14 14 N 1.46502 * 109.47204 * 294.54499 * 11 10 7 15 15 C 1.34781 * 119.99661 * 153.55671 * 14 11 10 16 16 O 1.21279 * 119.99935 * 0.02562 * 15 14 11 17 17 C 1.50699 * 119.99505 * 180.02562 * 15 14 11 18 18 S 1.81002 * 109.46685 * 180.02562 * 17 15 14 19 19 C 1.76200 * 99.99924 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99986 * 359.97438 * 19 18 17 21 21 C 1.38799 * 119.99985 * 180.02562 * 19 18 17 22 22 N 1.31633 * 119.99724 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00096 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47039 * 90.00164 * 23 21 19 25 25 H 1.48501 * 109.47054 * 210.00543 * 23 21 19 26 26 H 1.48506 * 109.46956 * 330.00051 * 23 21 19 27 27 N 1.30176 * 106.39452 * 0.26463 * 4 3 2 28 28 O 1.20924 * 111.60541 * 359.53802 * 27 4 3 29 29 H 1.08998 * 109.46832 * 90.00025 * 1 2 3 30 30 H 1.09003 * 109.46442 * 209.99278 * 1 2 3 31 31 H 1.09001 * 109.47305 * 329.99560 * 1 2 3 32 32 H 1.08003 * 127.99973 * 359.95433 * 3 2 1 33 33 H 1.08999 * 109.47230 * 335.00463 * 5 4 3 34 34 H 1.09001 * 109.47610 * 215.00031 * 5 4 3 35 35 H 1.00905 * 110.99715 * 56.04289 * 6 5 4 36 36 H 1.08999 * 109.47547 * 180.02562 * 9 7 6 37 37 H 1.08999 * 109.46983 * 300.00223 * 9 7 6 38 38 H 1.08997 * 109.46785 * 59.99872 * 9 7 6 39 39 H 1.08994 * 109.47040 * 294.62495 * 10 7 6 40 40 H 1.09006 * 109.46636 * 54.62560 * 10 7 6 41 41 H 1.08996 * 109.47390 * 60.00059 * 13 11 10 42 42 H 1.09005 * 109.46325 * 180.02562 * 13 11 10 43 43 H 1.09002 * 109.47316 * 299.99400 * 13 11 10 44 44 H 0.96994 * 119.99833 * 333.56464 * 14 11 10 45 45 H 1.09000 * 109.47538 * 299.99832 * 17 15 14 46 46 H 1.08996 * 109.47439 * 60.00423 * 17 15 14 47 47 H 0.97002 * 119.99668 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0850 0.0000 4 6 3.6214 0.5374 0.0006 5 6 4.9210 1.3002 0.0014 6 7 5.4038 1.4437 1.3814 7 6 6.6716 2.1845 1.4213 8 1 7.2784 1.9130 0.5574 9 6 6.3854 3.6872 1.3915 10 6 7.4266 1.8346 2.7052 11 6 8.8040 2.5004 2.6845 12 1 8.6873 3.5715 2.5197 13 6 9.5050 2.2637 4.0237 14 7 9.6084 1.9248 1.6038 15 6 10.5936 2.6497 1.0375 16 8 10.8143 3.7782 1.4229 17 6 11.4207 2.0577 -0.0744 18 16 12.6518 3.2672 -0.6200 19 6 13.4524 2.3392 -1.8859 20 1 13.1269 1.3331 -2.1058 21 6 14.5019 2.9007 -2.5998 22 7 15.1003 2.2072 -3.5452 23 14 15.0653 4.6405 -2.2190 24 1 16.1224 4.6015 -1.1768 25 1 15.6082 5.2660 -3.4516 26 1 13.9131 5.4372 -1.7259 27 7 3.4764 -0.7563 -0.0049 28 8 2.3095 -1.0736 0.0004 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3632 -0.8901 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 2.0344 2.1271 -0.0007 33 1 4.7632 2.2874 -0.4328 34 1 5.6608 0.7582 -0.5877 35 1 5.4964 0.5433 1.8275 36 1 7.3261 4.2369 1.4207 37 1 5.8475 3.9365 0.4768 38 1 5.7786 3.9586 2.2553 39 1 6.8631 2.1921 3.5670 40 1 7.5467 0.7532 2.7727 41 1 9.6217 1.1927 4.1885 42 1 10.4861 2.7385 4.0090 43 1 8.9065 2.6920 4.8278 44 1 9.4320 1.0221 1.2958 45 1 11.9267 1.1622 0.2861 46 1 10.7719 1.7968 -0.9105 47 1 15.8336 2.5997 -4.0443 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133735720.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:28 Heat of formation + Delta-G solvation = 9.514454 kcal Electronic energy + Delta-G solvation = -26504.378592 eV Core-core repulsion = 22623.322777 eV Total energy + Delta-G solvation = -3881.055815 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.25801 -39.72503 -38.02306 -35.88239 -34.38209 -33.67726 -32.44697 -31.90655 -30.41077 -28.67038 -28.22831 -27.26841 -26.04855 -25.61682 -23.38629 -22.07542 -20.83928 -20.38122 -20.16904 -17.97809 -17.88304 -17.62368 -16.61538 -16.29324 -16.18145 -15.43465 -15.10486 -14.98758 -14.93380 -14.54556 -14.22184 -13.94756 -13.73968 -13.49717 -13.42548 -13.30619 -13.09237 -12.82102 -12.80039 -12.66381 -12.55428 -12.11136 -12.06294 -11.84144 -11.63497 -11.39483 -11.26875 -11.01871 -10.99390 -10.91613 -10.60206 -10.46715 -9.86348 -9.68946 -9.50614 -9.03104 -8.97944 -8.85398 -8.50966 -6.92464 -6.29598 -4.01339 1.10734 1.83816 2.74275 2.76353 2.97243 3.30438 3.33942 3.49614 3.61441 3.65793 3.95317 4.06852 4.32368 4.45837 4.62699 4.63253 4.71529 4.75455 4.84661 4.86912 4.89404 5.09101 5.09437 5.14140 5.18497 5.19520 5.24732 5.29837 5.33731 5.48018 5.51438 5.60428 5.61034 5.68301 5.70147 5.75249 5.77331 5.93053 6.00391 6.12300 6.17178 6.58721 6.59355 6.92556 7.61207 7.92523 7.93450 8.40956 8.49603 9.16546 10.79645 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014394 B = 0.001989 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.842934 B =14074.965174 C =15248.251918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.037 4.037 3 C -0.218 4.218 4 C 0.025 3.975 5 C 0.136 3.864 6 N -0.679 5.679 7 C 0.083 3.917 8 H 0.052 0.948 9 C -0.143 4.143 10 C -0.126 4.126 11 C 0.143 3.857 12 H 0.095 0.905 13 C -0.163 4.163 14 N -0.733 5.733 15 C 0.532 3.468 16 O -0.519 6.519 17 C -0.125 4.125 18 S -0.141 6.141 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 N -0.363 5.363 28 O 0.099 5.901 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.171 0.829 33 H 0.096 0.904 34 H 0.051 0.949 35 H 0.343 0.657 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.062 0.938 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.397 0.603 45 H 0.096 0.904 46 H 0.095 0.905 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.788 -3.769 11.620 32.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.101 4.101 3 C -0.240 4.240 4 C -0.134 4.134 5 C 0.007 3.993 6 N -0.312 5.312 7 C -0.026 4.026 8 H 0.070 0.930 9 C -0.201 4.201 10 C -0.164 4.164 11 C 0.037 3.963 12 H 0.113 0.887 13 C -0.222 4.222 14 N -0.387 5.387 15 C 0.318 3.682 16 O -0.393 6.393 17 C -0.276 4.276 18 S 0.085 5.915 19 C -0.670 4.670 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 N -0.067 5.067 28 O 0.032 5.968 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.188 0.812 33 H 0.115 0.885 34 H 0.069 0.931 35 H 0.162 0.838 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.230 0.770 45 H 0.114 0.886 46 H 0.114 0.886 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -28.801 -2.358 12.232 31.380 hybrid contribution 0.391 -1.103 -1.035 1.562 sum -28.410 -3.462 11.198 30.733 Atomic orbital electron populations 1.20336 0.84005 1.04678 1.04116 1.24526 0.96421 0.86188 1.02931 1.22397 0.91200 1.00996 1.09400 1.23433 0.97399 0.89789 1.02762 1.20238 0.89413 0.98794 0.90875 1.60540 1.30592 1.24268 1.15817 1.21561 0.88314 0.95185 0.97583 0.93012 1.21859 1.01905 0.94121 1.02199 1.22052 0.95028 1.00880 0.98471 1.20951 0.88814 0.99598 0.86906 0.88746 1.22181 1.01748 1.01894 0.96371 1.46101 1.35831 1.18423 1.38326 1.20255 0.79690 0.85739 0.82522 1.90692 1.67510 1.18431 1.62695 1.23288 1.01175 1.04157 0.98953 1.84770 1.38752 1.21462 1.46475 1.22322 1.20701 1.03635 1.20292 0.89436 1.24719 0.94803 0.98143 0.93664 1.69943 1.22769 1.37401 1.21564 0.86731 0.81439 0.84839 0.78815 1.19209 1.19938 1.15925 1.73858 0.97063 1.16434 1.19349 1.84819 1.11268 1.33234 1.67491 0.89408 0.89833 0.89002 0.81168 0.88542 0.93077 0.83844 0.91678 0.92839 0.91916 0.89484 0.91435 0.92590 0.91677 0.91811 0.76962 0.88602 0.88644 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.21 10.45 36.00 0.38 0.17 16 2 C -0.04 -0.26 7.49 -35.30 -0.26 -0.52 16 3 C -0.22 -1.66 11.06 -39.38 -0.44 -2.10 16 4 C 0.03 0.24 6.84 -82.10 -0.56 -0.32 16 5 C 0.14 1.19 6.07 -4.98 -0.03 1.16 16 6 N -0.68 -5.72 6.29 -108.00 -0.68 -6.40 16 7 C 0.08 0.71 2.63 -67.72 -0.18 0.53 16 8 H 0.05 0.51 7.31 -51.92 -0.38 0.13 16 9 C -0.14 -1.31 9.16 37.16 0.34 -0.97 16 10 C -0.13 -0.99 4.28 -26.73 -0.11 -1.10 16 11 C 0.14 1.50 2.47 -67.93 -0.17 1.33 16 12 H 0.09 1.17 5.73 -51.93 -0.30 0.87 16 13 C -0.16 -1.66 9.50 37.16 0.35 -1.31 16 14 N -0.73 -8.90 4.45 -53.80 -0.24 -9.14 16 15 C 0.53 9.17 7.83 -10.98 -0.09 9.09 16 16 O -0.52 -10.86 15.50 5.56 0.09 -10.77 16 17 C -0.13 -2.40 6.16 36.01 0.22 -2.18 16 18 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 19 C -0.52 -15.08 10.04 30.94 0.31 -14.77 16 20 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 21 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 22 N -0.88 -26.65 13.97 55.49 0.78 -25.87 16 23 Si 0.86 21.84 27.74 -169.99 -4.71 17.12 16 24 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 27 N -0.36 -4.02 12.07 33.42 0.40 -3.62 16 28 O 0.10 0.96 11.20 17.17 0.19 1.15 16 29 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 31 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.17 0.93 8.06 -52.48 -0.42 0.51 16 33 H 0.10 0.77 7.32 -51.93 -0.38 0.39 16 34 H 0.05 0.48 8.06 -51.93 -0.42 0.06 16 35 H 0.34 2.88 8.29 -39.29 -0.33 2.55 16 36 H 0.06 0.68 6.47 -51.93 -0.34 0.35 16 37 H 0.05 0.48 7.34 -51.93 -0.38 0.10 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.47 8.02 -51.93 -0.42 0.06 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.40 3.88 8.62 -40.82 -0.35 3.53 16 45 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 46 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 47 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 403.17 15.07 6.08 6.08 Total: -1.00 -34.85 403.17 -7.94 -42.79 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -7.51 Total: 2.51 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -0.33 Total: -8.29 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: 0.26 Total: -45.03 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.28 Total: -9.62 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.71 Total: 17.12 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.85 -7.94 -42.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133735720.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.303 kcal (2) G-P(sol) polarization free energy of solvation -34.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds