Wall clock time and date at job start Sat Apr 11 2020 06:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35458 * 126.77809 * 2 1 4 4 C 1.41374 * 103.98946 * 179.97438 * 3 2 1 5 5 C 1.50695 * 126.80203 * 180.02562 * 4 3 2 6 6 N 1.46900 * 109.47318 * 95.00366 * 5 4 3 7 7 C 1.46893 * 111.00425 * 180.02562 * 6 5 4 8 8 H 1.09008 * 109.46811 * 323.25868 * 7 6 5 9 9 C 1.52999 * 109.47402 * 83.25846 * 7 6 5 10 10 C 1.53000 * 109.47352 * 203.25844 * 7 6 5 11 11 C 1.53003 * 109.47086 * 174.62319 * 10 7 6 12 12 H 1.08996 * 109.47170 * 54.54928 * 11 10 7 13 13 C 1.53004 * 109.46662 * 174.55004 * 11 10 7 14 14 N 1.46502 * 109.47204 * 294.54499 * 11 10 7 15 15 C 1.34781 * 119.99661 * 153.55671 * 14 11 10 16 16 O 1.21279 * 119.99935 * 0.02562 * 15 14 11 17 17 C 1.50699 * 119.99505 * 180.02562 * 15 14 11 18 18 S 1.81002 * 109.46685 * 180.02562 * 17 15 14 19 19 C 1.76200 * 99.99924 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99986 * 359.97438 * 19 18 17 21 21 C 1.38799 * 119.99985 * 180.02562 * 19 18 17 22 22 N 1.31633 * 119.99724 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00096 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47039 * 90.00164 * 23 21 19 25 25 H 1.48501 * 109.47054 * 210.00543 * 23 21 19 26 26 H 1.48506 * 109.46956 * 330.00051 * 23 21 19 27 27 N 1.30176 * 106.39452 * 0.26463 * 4 3 2 28 28 O 1.20924 * 111.60541 * 359.53802 * 27 4 3 29 29 H 1.08998 * 109.46832 * 90.00025 * 1 2 3 30 30 H 1.09003 * 109.46442 * 209.99278 * 1 2 3 31 31 H 1.09001 * 109.47305 * 329.99560 * 1 2 3 32 32 H 1.08003 * 127.99973 * 359.95433 * 3 2 1 33 33 H 1.08999 * 109.47230 * 335.00463 * 5 4 3 34 34 H 1.09001 * 109.47610 * 215.00031 * 5 4 3 35 35 H 1.00905 * 110.99715 * 56.04289 * 6 5 4 36 36 H 1.08999 * 109.47547 * 180.02562 * 9 7 6 37 37 H 1.08999 * 109.46983 * 300.00223 * 9 7 6 38 38 H 1.08997 * 109.46785 * 59.99872 * 9 7 6 39 39 H 1.08994 * 109.47040 * 294.62495 * 10 7 6 40 40 H 1.09006 * 109.46636 * 54.62560 * 10 7 6 41 41 H 1.08996 * 109.47390 * 60.00059 * 13 11 10 42 42 H 1.09005 * 109.46325 * 180.02562 * 13 11 10 43 43 H 1.09002 * 109.47316 * 299.99400 * 13 11 10 44 44 H 0.96994 * 119.99833 * 333.56464 * 14 11 10 45 45 H 1.09000 * 109.47538 * 299.99832 * 17 15 14 46 46 H 1.08996 * 109.47439 * 60.00423 * 17 15 14 47 47 H 0.97002 * 119.99668 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0850 0.0000 4 6 3.6214 0.5374 0.0006 5 6 4.9210 1.3002 0.0014 6 7 5.4038 1.4437 1.3814 7 6 6.6716 2.1845 1.4213 8 1 7.2784 1.9130 0.5574 9 6 6.3854 3.6872 1.3915 10 6 7.4266 1.8346 2.7052 11 6 8.8040 2.5004 2.6845 12 1 8.6873 3.5715 2.5197 13 6 9.5050 2.2637 4.0237 14 7 9.6084 1.9248 1.6038 15 6 10.5936 2.6497 1.0375 16 8 10.8143 3.7782 1.4229 17 6 11.4207 2.0577 -0.0744 18 16 12.6518 3.2672 -0.6200 19 6 13.4524 2.3392 -1.8859 20 1 13.1269 1.3331 -2.1058 21 6 14.5019 2.9007 -2.5998 22 7 15.1003 2.2072 -3.5452 23 14 15.0653 4.6405 -2.2190 24 1 16.1224 4.6015 -1.1768 25 1 15.6082 5.2660 -3.4516 26 1 13.9131 5.4372 -1.7259 27 7 3.4764 -0.7563 -0.0049 28 8 2.3095 -1.0736 0.0004 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3632 -0.8901 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 2.0344 2.1271 -0.0007 33 1 4.7632 2.2874 -0.4328 34 1 5.6608 0.7582 -0.5877 35 1 5.4964 0.5433 1.8275 36 1 7.3261 4.2369 1.4207 37 1 5.8475 3.9365 0.4768 38 1 5.7786 3.9586 2.2553 39 1 6.8631 2.1921 3.5670 40 1 7.5467 0.7532 2.7727 41 1 9.6217 1.1927 4.1885 42 1 10.4861 2.7385 4.0090 43 1 8.9065 2.6920 4.8278 44 1 9.4320 1.0221 1.2958 45 1 11.9267 1.1622 0.2861 46 1 10.7719 1.7968 -0.9105 47 1 15.8336 2.5997 -4.0443 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133735720.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:26 Heat of formation + Delta-G solvation = -15.178484 kcal Electronic energy + Delta-G solvation = -26505.449358 eV Core-core repulsion = 22623.322777 eV Total energy + Delta-G solvation = -3882.126582 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -45.91003 -40.93369 -38.91246 -36.80479 -35.10753 -34.69020 -34.24046 -32.99194 -31.27628 -30.00487 -28.64322 -27.98308 -27.86796 -26.74550 -24.02909 -23.03266 -21.86734 -21.24489 -20.88719 -19.89930 -18.64519 -18.25372 -17.99889 -17.35688 -17.07439 -17.01316 -16.38222 -16.19924 -15.86206 -15.73871 -15.15791 -14.96359 -14.74149 -14.66049 -14.35132 -14.06187 -13.93409 -13.84839 -13.61086 -13.39341 -13.33051 -13.28489 -13.16415 -13.02628 -12.91794 -12.70699 -12.59620 -12.28273 -12.05636 -11.87718 -11.72711 -11.69962 -11.18805 -11.15207 -10.96104 -10.55683 -10.24212 -10.12557 -9.56096 -9.01077 -8.53295 -6.24128 0.52310 0.97760 1.21472 1.30053 1.45403 1.54963 1.57723 2.21944 2.25055 2.26610 2.70426 2.84894 2.93686 3.29592 3.51417 3.73342 3.84424 3.92580 4.10057 4.13672 4.19863 4.26778 4.29214 4.37087 4.41587 4.43991 4.48279 4.54023 4.69805 4.75127 4.76392 4.84101 4.91230 4.92184 4.94803 5.02386 5.04238 5.13545 5.27779 5.30618 5.37863 5.55053 5.68731 5.88207 6.09303 6.25120 6.47163 6.91735 7.20737 7.30196 8.59176 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014394 B = 0.001989 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.842934 B =14074.965174 C =15248.251918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.030 4.030 3 C -0.230 4.230 4 C 0.014 3.986 5 C 0.139 3.861 6 N -0.673 5.673 7 C 0.086 3.914 8 H 0.040 0.960 9 C -0.140 4.140 10 C -0.114 4.114 11 C 0.142 3.858 12 H 0.077 0.923 13 C -0.160 4.160 14 N -0.708 5.708 15 C 0.538 3.462 16 O -0.559 6.559 17 C -0.113 4.113 18 S -0.172 6.172 19 C -0.531 4.531 20 H 0.060 0.940 21 C 0.045 3.955 22 N -0.917 5.917 23 Si 0.915 3.085 24 H -0.262 1.262 25 H -0.259 1.259 26 H -0.236 1.236 27 N -0.397 5.397 28 O 0.083 5.917 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.110 0.890 32 H 0.191 0.809 33 H 0.103 0.897 34 H 0.041 0.959 35 H 0.345 0.655 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.069 0.931 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.035 0.965 43 H 0.084 0.916 44 H 0.412 0.588 45 H 0.110 0.890 46 H 0.109 0.891 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.089 -3.542 13.055 34.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.094 4.094 3 C -0.252 4.252 4 C -0.144 4.144 5 C 0.009 3.991 6 N -0.306 5.306 7 C -0.023 4.023 8 H 0.058 0.942 9 C -0.198 4.198 10 C -0.152 4.152 11 C 0.037 3.963 12 H 0.095 0.905 13 C -0.218 4.218 14 N -0.362 5.362 15 C 0.323 3.677 16 O -0.437 6.437 17 C -0.264 4.264 18 S 0.055 5.945 19 C -0.678 4.678 20 H 0.078 0.922 21 C -0.160 4.160 22 N -0.555 5.555 23 Si 0.737 3.263 24 H -0.187 1.187 25 H -0.183 1.183 26 H -0.160 1.160 27 N -0.104 5.104 28 O 0.018 5.982 29 H 0.120 0.880 30 H 0.111 0.889 31 H 0.129 0.871 32 H 0.208 0.792 33 H 0.121 0.879 34 H 0.059 0.941 35 H 0.163 0.837 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.121 0.879 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.054 0.946 43 H 0.103 0.897 44 H 0.248 0.752 45 H 0.128 0.872 46 H 0.128 0.872 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -31.149 -2.183 13.676 34.089 hybrid contribution 0.932 -1.287 -1.440 2.144 sum -30.217 -3.469 12.237 32.785 Atomic orbital electron populations 1.20571 0.80985 1.06073 1.05414 1.25289 0.97965 0.85245 1.00869 1.22706 0.90420 1.02199 1.09861 1.23686 0.98398 0.89735 1.02586 1.20223 0.89067 0.98865 0.90906 1.60520 1.30165 1.24318 1.15584 1.21496 0.88379 0.94880 0.97571 0.94218 1.21816 1.01138 0.94304 1.02543 1.21963 0.93032 1.01628 0.98544 1.21096 0.89928 0.98905 0.86329 0.90509 1.22143 1.00396 1.02679 0.96563 1.45913 1.34001 1.18579 1.37718 1.19864 0.80368 0.85344 0.82135 1.90684 1.68980 1.20136 1.63943 1.23288 1.00051 1.02745 1.00361 1.84668 1.40761 1.23723 1.45377 1.22473 1.21086 1.02944 1.21340 0.92156 1.25584 0.94960 1.01962 0.93537 1.70022 1.23579 1.39268 1.22614 0.85854 0.80944 0.80253 0.79238 1.18671 1.18278 1.16014 1.73846 0.97994 1.17346 1.21182 1.84771 1.11250 1.34335 1.67831 0.87984 0.88875 0.87128 0.79182 0.87901 0.94108 0.83654 0.93274 0.92907 0.91164 0.87946 0.89762 0.91179 0.94622 0.89675 0.75180 0.87182 0.87237 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.22 10.45 71.24 0.74 0.52 16 2 C -0.03 -0.38 7.49 25.04 0.19 -0.19 16 3 C -0.23 -3.17 11.06 22.40 0.25 -2.93 16 4 C 0.01 0.27 6.84 43.57 0.30 0.56 16 5 C 0.14 2.32 6.07 85.56 0.52 2.84 16 6 N -0.67 -10.22 6.29 -495.59 -3.12 -13.34 16 7 C 0.09 1.34 2.63 44.92 0.12 1.45 16 8 H 0.04 0.72 7.31 -2.38 -0.02 0.71 16 9 C -0.14 -2.39 9.16 71.98 0.66 -1.73 16 10 C -0.11 -1.48 4.28 30.60 0.13 -1.35 16 11 C 0.14 2.72 2.47 44.99 0.11 2.83 16 12 H 0.08 1.83 5.73 -2.39 -0.01 1.82 16 13 C -0.16 -2.91 9.50 71.98 0.68 -2.22 16 14 N -0.71 -16.05 4.45 -442.52 -1.97 -18.02 16 15 C 0.54 18.10 7.83 87.66 0.69 18.79 16 16 O -0.56 -23.38 15.50 -3.03 -0.05 -23.42 16 17 C -0.11 -4.29 6.16 71.24 0.44 -3.85 16 18 S -0.17 -8.71 18.55 -56.49 -1.05 -9.76 16 19 C -0.53 -31.18 10.04 67.95 0.68 -30.50 16 20 H 0.06 3.74 8.03 -2.91 -0.02 3.72 16 21 C 0.04 2.66 5.50 84.86 0.47 3.13 16 22 N -0.92 -56.22 13.97 21.65 0.30 -55.92 16 23 Si 0.92 45.26 27.74 68.60 1.90 47.16 16 24 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 25 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 26 H -0.24 -11.64 6.74 99.48 0.67 -10.97 16 27 N -0.40 -8.73 12.07 -49.55 -0.60 -9.33 16 28 O 0.08 1.57 11.20 71.62 0.80 2.37 16 29 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 32 H 0.19 1.66 8.06 -2.91 -0.02 1.64 16 33 H 0.10 1.55 7.32 -2.39 -0.02 1.53 16 34 H 0.04 0.76 8.06 -2.39 -0.02 0.74 16 35 H 0.34 5.15 8.29 -89.69 -0.74 4.41 16 36 H 0.05 1.00 6.47 -2.39 -0.02 0.99 16 37 H 0.05 0.89 7.34 -2.39 -0.02 0.87 16 38 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.08 0.88 8.02 -2.38 -0.02 0.86 16 41 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 43 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.41 7.06 8.62 -92.71 -0.80 6.27 16 45 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 46 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 47 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -77.14 403.17 1.61 -75.53 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -0.59 Total: 17.36 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: 5.97 Total: -12.63 kcal Atomic # 7 Polarization: -91.22 SS G_CDS: -5.38 Total: -96.60 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: 0.75 Total: -21.06 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.90 Total: 47.16 kcal Atomic # 16 Polarization: -8.71 SS G_CDS: -1.05 Total: -9.76 kcal Total: -77.14 1.61 -75.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133735720.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.351 kcal (2) G-P(sol) polarization free energy of solvation -77.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds