Wall clock time and date at job start Sat Apr 11 2020 06:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.41381 * 126.80663 * 2 1 4 4 C 1.35452 * 103.99000 * 180.09388 * 3 2 1 5 5 C 1.50696 * 126.77748 * 179.90795 * 4 3 2 6 6 N 1.46901 * 109.46908 * 89.71335 * 5 4 3 7 7 C 1.46899 * 110.99879 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.47347 * 324.99650 * 7 6 5 9 9 C 1.53005 * 109.47192 * 85.00145 * 7 6 5 10 10 C 1.52999 * 109.47178 * 204.99823 * 7 6 5 11 11 C 1.53006 * 109.47054 * 65.00372 * 10 7 6 12 12 H 1.09001 * 109.47002 * 304.99688 * 11 10 7 13 13 C 1.52997 * 109.47127 * 185.00114 * 11 10 7 14 14 N 1.46492 * 109.47363 * 64.99814 * 11 10 7 15 15 C 1.34772 * 120.00385 * 205.00351 * 14 11 10 16 16 O 1.21278 * 119.99770 * 359.97438 * 15 14 11 17 17 C 1.50705 * 120.00486 * 180.02562 * 15 14 11 18 18 S 1.80999 * 109.47084 * 179.97438 * 17 15 14 19 19 C 1.76205 * 99.99558 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00158 * 0.02562 * 19 18 17 21 21 C 1.38801 * 119.99627 * 179.97438 * 19 18 17 22 22 N 1.31623 * 120.00269 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99592 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46644 * 90.00416 * 23 21 19 25 25 H 1.48502 * 109.46826 * 209.99948 * 23 21 19 26 26 H 1.48495 * 109.47293 * 329.99904 * 23 21 19 27 27 O 1.34042 * 106.44106 * 359.64945 * 4 3 2 28 28 N 1.20920 * 111.57005 * 0.23546 * 27 4 3 29 29 H 1.09003 * 109.46922 * 270.29390 * 1 2 3 30 30 H 1.09005 * 109.46995 * 30.29053 * 1 2 3 31 31 H 1.08997 * 109.47454 * 150.29180 * 1 2 3 32 32 H 1.07997 * 128.00271 * 0.02562 * 3 2 1 33 33 H 1.08999 * 109.47376 * 329.71241 * 5 4 3 34 34 H 1.08998 * 109.47267 * 209.70931 * 5 4 3 35 35 H 1.00893 * 110.99966 * 303.95362 * 6 5 4 36 36 H 1.09001 * 109.47320 * 179.97438 * 9 7 6 37 37 H 1.08998 * 109.46664 * 300.00279 * 9 7 6 38 38 H 1.08995 * 109.46897 * 59.99539 * 9 7 6 39 39 H 1.08997 * 109.47394 * 304.99914 * 10 7 6 40 40 H 1.09004 * 109.47644 * 184.99986 * 10 7 6 41 41 H 1.09001 * 109.47289 * 299.99953 * 13 11 10 42 42 H 1.09004 * 109.47261 * 59.99697 * 13 11 10 43 43 H 1.09002 * 109.47153 * 179.97438 * 13 11 10 44 44 H 0.97012 * 120.00025 * 25.00061 * 14 11 10 45 45 H 1.08998 * 109.46823 * 299.99865 * 17 15 14 46 46 H 1.08996 * 109.47135 * 59.99371 * 17 15 14 47 47 H 0.97001 * 120.00394 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6025 0.6067 -0.0022 5 6 4.9022 1.3694 -0.0050 6 7 5.3237 1.6239 1.3790 7 6 6.5905 2.3668 1.4154 8 1 7.2219 2.0492 0.5856 9 6 6.3065 3.8655 1.2958 10 6 7.3076 2.0877 2.7378 11 6 7.7025 0.6108 2.8020 12 1 6.8190 -0.0086 2.6475 13 6 8.3071 0.3037 4.1734 14 7 8.6890 0.3233 1.7579 15 6 8.8163 -0.9295 1.2776 16 8 8.1144 -1.8189 1.7101 17 6 9.8316 -1.2254 0.2039 18 16 9.7608 -2.9823 -0.2256 19 6 11.0122 -3.0449 -1.4645 20 1 11.5503 -2.1483 -1.7344 21 6 11.3072 -4.2470 -2.0927 22 7 10.6519 -5.3399 -1.7634 23 14 12.6335 -4.3133 -3.4066 24 1 13.9436 -4.6087 -2.7729 25 1 12.3061 -5.3796 -4.3869 26 1 12.7049 -3.0044 -4.1043 27 8 3.4537 -0.7254 0.0046 28 7 2.2868 -1.0423 0.0058 29 1 -0.3633 0.0053 1.0277 30 1 -0.3633 0.8874 -0.5184 31 1 -0.3634 -0.8925 -0.5093 32 1 2.0710 2.1742 0.0004 33 1 4.7655 2.3184 -0.5235 34 1 5.6664 0.7833 -0.5155 35 1 4.6041 2.1102 1.8925 36 1 7.2464 4.4168 1.3232 37 1 5.7955 4.0643 0.3537 38 1 5.6750 4.1829 2.1255 39 1 6.6422 2.3223 3.5686 40 1 8.2027 2.7062 2.8034 41 1 9.1907 0.9231 4.3280 42 1 7.5731 0.5177 4.9503 43 1 8.5881 -0.7485 4.2193 44 1 9.2507 1.0347 1.4121 45 1 9.6114 -0.6259 -0.6794 46 1 10.8288 -0.9810 0.5695 47 1 10.8578 -6.1799 -2.2026 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133736107.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:42 Heat of formation + Delta-G solvation = 10.666962 kcal Electronic energy + Delta-G solvation = -27240.370223 eV Core-core repulsion = 23359.364384 eV Total energy + Delta-G solvation = -3881.005839 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.98150 -39.44655 -37.94821 -35.41316 -34.85575 -33.18853 -32.37896 -31.36306 -30.06860 -28.85033 -28.41791 -27.01669 -25.58677 -25.42505 -23.13719 -21.81942 -21.06619 -20.22966 -20.09757 -17.80886 -17.67039 -17.41560 -16.38203 -16.10914 -15.69549 -15.32726 -14.97700 -14.76413 -14.73615 -14.28426 -13.98610 -13.73187 -13.66195 -13.57108 -13.21530 -13.12597 -12.99318 -12.85329 -12.73088 -12.58617 -12.31554 -12.26546 -11.87018 -11.77622 -11.31105 -11.20280 -11.05349 -11.02426 -10.97102 -10.76536 -10.69627 -10.14529 -9.75502 -9.61587 -9.20855 -9.02101 -8.76025 -8.70849 -8.15232 -6.42858 -6.16404 -3.86119 1.32022 2.07119 2.95631 3.14103 3.24899 3.27291 3.31548 3.37396 3.80930 3.89723 4.04547 4.25355 4.26501 4.40016 4.66871 4.80827 4.83658 4.91346 4.99410 5.10902 5.18374 5.19324 5.20828 5.22462 5.26450 5.31287 5.33204 5.46377 5.52087 5.59696 5.61804 5.67095 5.68169 5.73037 5.83153 5.84353 5.92622 5.97049 6.20872 6.29362 6.40072 6.57820 6.87803 7.00352 7.64117 7.88769 8.21466 8.40009 8.80403 9.28638 10.90922 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009208 B = 0.002834 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3040.139604 B = 9878.083342 C =11741.925776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.007 3.993 3 C -0.235 4.235 4 C -0.014 4.014 5 C 0.137 3.863 6 N -0.674 5.674 7 C 0.083 3.917 8 H 0.087 0.913 9 C -0.184 4.184 10 C -0.113 4.113 11 C 0.147 3.853 12 H 0.103 0.897 13 C -0.164 4.164 14 N -0.734 5.734 15 C 0.531 3.469 16 O -0.513 6.513 17 C -0.153 4.153 18 S -0.059 6.059 19 C -0.535 4.535 20 H 0.071 0.929 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.917 3.083 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.273 1.273 27 O 0.119 5.881 28 N -0.360 5.360 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.167 0.833 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.343 0.657 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.050 0.950 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.392 0.608 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.184 23.310 6.957 28.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.152 4.152 3 C -0.257 4.257 4 C -0.079 4.079 5 C 0.007 3.993 6 N -0.306 5.306 7 C -0.027 4.027 8 H 0.105 0.895 9 C -0.243 4.243 10 C -0.151 4.151 11 C 0.042 3.958 12 H 0.121 0.879 13 C -0.223 4.223 14 N -0.388 5.388 15 C 0.317 3.683 16 O -0.386 6.386 17 C -0.304 4.304 18 S 0.168 5.832 19 C -0.683 4.683 20 H 0.089 0.911 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.744 3.256 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 O 0.051 5.949 28 N -0.063 5.063 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.185 0.815 33 H 0.083 0.917 34 H 0.120 0.880 35 H 0.162 0.838 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.225 0.775 45 H 0.104 0.896 46 H 0.105 0.895 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.333 19.660 7.728 26.103 hybrid contribution 1.582 3.124 -1.771 3.924 sum -13.752 22.784 5.957 27.271 Atomic orbital electron populations 1.20134 0.86109 1.03634 1.03241 1.23588 0.99015 0.88894 1.03670 1.22368 0.91285 1.00900 1.11175 1.24306 0.97554 0.84168 1.01865 1.20353 0.90701 0.96839 0.91405 1.60452 1.05712 1.52384 1.12020 1.21636 0.91038 0.90623 0.99369 0.89531 1.22530 1.02576 0.97405 1.01770 1.21878 0.99928 0.96134 0.97174 1.20853 0.92713 0.95576 0.86658 0.87899 1.22200 1.00656 1.02684 0.96746 1.46092 1.40718 1.10430 1.41550 1.20216 0.83670 0.82022 0.82374 1.90712 1.44256 1.44753 1.58893 1.23532 1.00030 1.07636 0.99212 1.85448 1.50597 0.97691 1.49471 1.22870 1.23185 0.97760 1.24521 0.91050 1.24985 0.96787 0.94711 0.97126 1.70018 1.39625 0.99502 1.41081 0.86194 0.80968 0.77956 0.80519 1.20317 1.20788 1.19748 1.84942 1.21188 1.22516 1.66248 1.73938 0.89439 1.24155 1.18771 0.90304 0.90240 0.90565 0.81529 0.91691 0.88043 0.83836 0.91630 0.92690 0.92305 0.90496 0.91162 0.93042 0.92225 0.91847 0.77486 0.89582 0.89541 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.47 36.00 0.38 -0.18 16 2 C 0.01 0.08 7.33 -82.10 -0.60 -0.52 16 3 C -0.23 -2.20 11.06 -39.38 -0.44 -2.64 16 4 C -0.01 -0.16 7.00 -35.30 -0.25 -0.41 16 5 C 0.14 1.20 6.05 -4.98 -0.03 1.17 16 6 N -0.67 -5.59 5.61 -107.99 -0.61 -6.19 16 7 C 0.08 0.58 2.53 -67.71 -0.17 0.41 16 8 H 0.09 0.71 7.28 -51.93 -0.38 0.33 16 9 C -0.18 -0.93 9.16 37.16 0.34 -0.59 16 10 C -0.11 -0.84 4.43 -26.73 -0.12 -0.96 16 11 C 0.15 1.68 2.52 -67.93 -0.17 1.51 16 12 H 0.10 1.52 7.06 -51.93 -0.37 1.16 16 13 C -0.16 -1.87 9.48 37.16 0.35 -1.52 16 14 N -0.73 -9.44 4.45 -53.81 -0.24 -9.68 16 15 C 0.53 9.88 7.81 -10.99 -0.09 9.80 16 16 O -0.51 -11.82 15.52 5.56 0.09 -11.73 16 17 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 18 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 19 C -0.54 -15.40 9.50 30.94 0.29 -15.11 16 20 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.54 13.22 55.49 0.73 -25.81 16 23 Si 0.92 21.64 29.55 -169.99 -5.02 16.62 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 27 O 0.12 1.80 11.20 17.17 0.19 1.99 16 28 N -0.36 -5.36 12.07 33.42 0.40 -4.96 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.17 1.01 8.06 -52.49 -0.42 0.58 16 33 H 0.07 0.41 7.44 -51.93 -0.39 0.02 16 34 H 0.10 1.06 8.05 -51.93 -0.42 0.64 16 35 H 0.34 2.36 8.46 -39.30 -0.33 2.03 16 36 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.05 0.27 7.45 -51.93 -0.39 -0.12 16 38 H 0.06 0.27 8.13 -51.93 -0.42 -0.15 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.39 3.87 8.60 -40.81 -0.35 3.52 16 45 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 46 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 47 H 0.27 7.62 8.31 -40.82 -0.34 7.29 16 LS Contribution 408.72 15.07 6.16 6.16 Total: -1.00 -36.60 408.72 -8.54 -45.14 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -7.66 Total: 2.18 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -0.37 Total: -9.88 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: 0.29 Total: -46.64 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.28 Total: -9.74 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.60 -8.54 -45.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133736107.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.806 kcal (2) G-P(sol) polarization free energy of solvation -36.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds