Wall clock time and date at job start Sat Apr 11 2020 06:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.41381 * 126.80663 * 2 1 4 4 C 1.35452 * 103.99000 * 180.09388 * 3 2 1 5 5 C 1.50696 * 126.77748 * 179.90795 * 4 3 2 6 6 N 1.46901 * 109.46908 * 89.71335 * 5 4 3 7 7 C 1.46899 * 110.99879 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.47347 * 324.99650 * 7 6 5 9 9 C 1.53005 * 109.47192 * 85.00145 * 7 6 5 10 10 C 1.52999 * 109.47178 * 204.99823 * 7 6 5 11 11 C 1.53006 * 109.47054 * 65.00372 * 10 7 6 12 12 H 1.09001 * 109.47002 * 304.99688 * 11 10 7 13 13 C 1.52997 * 109.47127 * 185.00114 * 11 10 7 14 14 N 1.46492 * 109.47363 * 64.99814 * 11 10 7 15 15 C 1.34772 * 120.00385 * 205.00351 * 14 11 10 16 16 O 1.21278 * 119.99770 * 359.97438 * 15 14 11 17 17 C 1.50705 * 120.00486 * 180.02562 * 15 14 11 18 18 S 1.80999 * 109.47084 * 179.97438 * 17 15 14 19 19 C 1.76205 * 99.99558 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00158 * 0.02562 * 19 18 17 21 21 C 1.38801 * 119.99627 * 179.97438 * 19 18 17 22 22 N 1.31623 * 120.00269 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99592 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46644 * 90.00416 * 23 21 19 25 25 H 1.48502 * 109.46826 * 209.99948 * 23 21 19 26 26 H 1.48495 * 109.47293 * 329.99904 * 23 21 19 27 27 O 1.34042 * 106.44106 * 359.64945 * 4 3 2 28 28 N 1.20920 * 111.57005 * 0.23546 * 27 4 3 29 29 H 1.09003 * 109.46922 * 270.29390 * 1 2 3 30 30 H 1.09005 * 109.46995 * 30.29053 * 1 2 3 31 31 H 1.08997 * 109.47454 * 150.29180 * 1 2 3 32 32 H 1.07997 * 128.00271 * 0.02562 * 3 2 1 33 33 H 1.08999 * 109.47376 * 329.71241 * 5 4 3 34 34 H 1.08998 * 109.47267 * 209.70931 * 5 4 3 35 35 H 1.00893 * 110.99966 * 303.95362 * 6 5 4 36 36 H 1.09001 * 109.47320 * 179.97438 * 9 7 6 37 37 H 1.08998 * 109.46664 * 300.00279 * 9 7 6 38 38 H 1.08995 * 109.46897 * 59.99539 * 9 7 6 39 39 H 1.08997 * 109.47394 * 304.99914 * 10 7 6 40 40 H 1.09004 * 109.47644 * 184.99986 * 10 7 6 41 41 H 1.09001 * 109.47289 * 299.99953 * 13 11 10 42 42 H 1.09004 * 109.47261 * 59.99697 * 13 11 10 43 43 H 1.09002 * 109.47153 * 179.97438 * 13 11 10 44 44 H 0.97012 * 120.00025 * 25.00061 * 14 11 10 45 45 H 1.08998 * 109.46823 * 299.99865 * 17 15 14 46 46 H 1.08996 * 109.47135 * 59.99371 * 17 15 14 47 47 H 0.97001 * 120.00394 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6025 0.6067 -0.0022 5 6 4.9022 1.3694 -0.0050 6 7 5.3237 1.6239 1.3790 7 6 6.5905 2.3668 1.4154 8 1 7.2219 2.0492 0.5856 9 6 6.3065 3.8655 1.2958 10 6 7.3076 2.0877 2.7378 11 6 7.7025 0.6108 2.8020 12 1 6.8190 -0.0086 2.6475 13 6 8.3071 0.3037 4.1734 14 7 8.6890 0.3233 1.7579 15 6 8.8163 -0.9295 1.2776 16 8 8.1144 -1.8189 1.7101 17 6 9.8316 -1.2254 0.2039 18 16 9.7608 -2.9823 -0.2256 19 6 11.0122 -3.0449 -1.4645 20 1 11.5503 -2.1483 -1.7344 21 6 11.3072 -4.2470 -2.0927 22 7 10.6519 -5.3399 -1.7634 23 14 12.6335 -4.3133 -3.4066 24 1 13.9436 -4.6087 -2.7729 25 1 12.3061 -5.3796 -4.3869 26 1 12.7049 -3.0044 -4.1043 27 8 3.4537 -0.7254 0.0046 28 7 2.2868 -1.0423 0.0058 29 1 -0.3633 0.0053 1.0277 30 1 -0.3633 0.8874 -0.5184 31 1 -0.3634 -0.8925 -0.5093 32 1 2.0710 2.1742 0.0004 33 1 4.7655 2.3184 -0.5235 34 1 5.6664 0.7833 -0.5155 35 1 4.6041 2.1102 1.8925 36 1 7.2464 4.4168 1.3232 37 1 5.7955 4.0643 0.3537 38 1 5.6750 4.1829 2.1255 39 1 6.6422 2.3223 3.5686 40 1 8.2027 2.7062 2.8034 41 1 9.1907 0.9231 4.3280 42 1 7.5731 0.5177 4.9503 43 1 8.5881 -0.7485 4.2193 44 1 9.2507 1.0347 1.4121 45 1 9.6114 -0.6259 -0.6794 46 1 10.8288 -0.9810 0.5695 47 1 10.8578 -6.1799 -2.2026 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133736107.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:41 Heat of formation + Delta-G solvation = -16.097415 kcal Electronic energy + Delta-G solvation = -27241.530813 eV Core-core repulsion = 23359.364384 eV Total energy + Delta-G solvation = -3882.166429 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.88065 -40.73088 -38.80509 -36.47775 -35.69396 -34.57596 -34.04892 -32.58225 -30.82247 -29.86257 -29.56283 -27.66738 -27.61345 -26.30752 -23.98791 -22.81030 -21.85542 -21.36394 -21.00940 -19.81674 -18.61011 -18.29634 -17.80901 -17.23619 -16.87200 -16.43201 -16.35591 -16.15789 -15.79949 -15.54231 -15.04757 -14.68282 -14.63336 -14.42970 -14.30871 -14.18931 -13.95832 -13.76026 -13.60085 -13.38842 -13.26056 -13.15182 -13.09450 -12.90605 -12.87664 -12.62150 -12.56957 -12.05881 -11.99081 -11.74545 -11.67734 -11.59720 -11.13420 -10.96593 -10.78757 -10.48054 -10.23330 -9.95111 -9.34348 -8.64639 -8.33192 -6.11094 0.46056 1.27636 1.28990 1.42515 1.48894 1.59479 1.75794 2.17860 2.28205 2.43118 3.00580 3.22276 3.32320 3.36176 3.54235 3.75453 4.01808 4.06809 4.13692 4.15760 4.30550 4.32325 4.35627 4.48536 4.53161 4.53671 4.57653 4.62300 4.63976 4.68524 4.81816 4.87345 4.91039 4.95368 4.97061 5.08009 5.18737 5.27155 5.32140 5.36882 5.42312 5.43683 5.70909 6.00414 6.20778 6.48394 6.67414 7.07613 7.32366 7.42437 8.76062 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009208 B = 0.002834 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3040.139604 B = 9878.083342 C =11741.925776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.006 3.994 3 C -0.220 4.220 4 C -0.026 4.026 5 C 0.143 3.857 6 N -0.690 5.690 7 C 0.084 3.916 8 H 0.074 0.926 9 C -0.175 4.175 10 C -0.102 4.102 11 C 0.146 3.854 12 H 0.066 0.934 13 C -0.160 4.160 14 N -0.704 5.704 15 C 0.533 3.467 16 O -0.566 6.566 17 C -0.127 4.127 18 S -0.157 6.157 19 C -0.544 4.544 20 H 0.083 0.917 21 C 0.011 3.989 22 N -0.913 5.913 23 Si 0.999 3.001 24 H -0.267 1.267 25 H -0.279 1.279 26 H -0.256 1.256 27 O 0.067 5.933 28 N -0.410 5.410 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.207 0.793 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.353 0.647 36 H 0.074 0.926 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.023 0.977 44 H 0.412 0.588 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.748 27.907 6.724 31.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.153 4.153 3 C -0.241 4.241 4 C -0.090 4.090 5 C 0.014 3.986 6 N -0.324 5.324 7 C -0.026 4.026 8 H 0.092 0.908 9 C -0.233 4.233 10 C -0.140 4.140 11 C 0.042 3.958 12 H 0.084 0.916 13 C -0.219 4.219 14 N -0.358 5.358 15 C 0.318 3.682 16 O -0.444 6.444 17 C -0.279 4.279 18 S 0.070 5.930 19 C -0.692 4.692 20 H 0.101 0.899 21 C -0.194 4.194 22 N -0.549 5.549 23 Si 0.821 3.179 24 H -0.192 1.192 25 H -0.204 1.204 26 H -0.180 1.180 27 O 0.006 5.994 28 N -0.120 5.120 29 H 0.110 0.890 30 H 0.127 0.873 31 H 0.088 0.912 32 H 0.224 0.776 33 H 0.116 0.884 34 H 0.093 0.907 35 H 0.172 0.828 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.042 0.958 44 H 0.249 0.751 45 H 0.125 0.875 46 H 0.125 0.875 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.845 24.347 7.512 29.489 hybrid contribution 1.355 1.817 -1.598 2.773 sum -13.490 26.165 5.914 30.026 Atomic orbital electron populations 1.20324 0.83561 1.04790 1.04423 1.24382 1.00715 0.88850 1.01338 1.22811 0.89803 1.02121 1.09408 1.24911 0.99355 0.83097 1.01631 1.20357 0.88953 0.97360 0.91954 1.60379 1.06624 1.53485 1.11876 1.21634 0.90184 0.92160 0.98588 0.90807 1.22426 1.03293 0.95195 1.02411 1.21854 1.01333 0.92756 0.98066 1.20960 0.90784 0.98078 0.86005 0.91568 1.22162 1.02100 1.00502 0.97116 1.45827 1.40465 1.08752 1.40749 1.19993 0.82868 0.83280 0.82024 1.90704 1.46243 1.46834 1.60642 1.23367 1.01825 1.01935 1.00759 1.85687 1.51556 1.05288 1.50429 1.23200 1.23034 0.98492 1.24431 0.89883 1.26163 0.99408 0.94092 0.99715 1.70198 1.41700 1.00309 1.42725 0.84944 0.77364 0.78605 0.76997 1.19245 1.20426 1.18021 1.84873 1.21709 1.24784 1.68011 1.73943 0.89882 1.26367 1.21783 0.88992 0.87266 0.91188 0.77558 0.88423 0.90669 0.82756 0.90747 0.92318 0.91319 0.88956 0.88583 0.90879 0.90329 0.95811 0.75123 0.87484 0.87502 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.00 10.47 71.23 0.75 -0.26 16 2 C 0.01 0.13 7.33 43.58 0.32 0.45 16 3 C -0.22 -3.78 11.06 22.40 0.25 -3.53 16 4 C -0.03 -0.58 7.00 25.04 0.18 -0.41 16 5 C 0.14 2.44 6.05 85.56 0.52 2.96 16 6 N -0.69 -10.64 5.61 -495.58 -2.78 -13.42 16 7 C 0.08 0.97 2.53 44.92 0.11 1.08 16 8 H 0.07 1.05 7.28 -2.39 -0.02 1.03 16 9 C -0.17 -1.07 9.16 71.98 0.66 -0.41 16 10 C -0.10 -1.20 4.43 30.60 0.14 -1.06 16 11 C 0.15 3.22 2.52 44.99 0.11 3.33 16 12 H 0.07 2.03 7.06 -2.39 -0.02 2.01 16 13 C -0.16 -3.49 9.48 71.98 0.68 -2.80 16 14 N -0.70 -17.43 4.45 -442.55 -1.97 -19.40 16 15 C 0.53 20.23 7.81 87.66 0.68 20.92 16 16 O -0.57 -27.72 15.52 -3.02 -0.05 -27.76 16 17 C -0.13 -5.18 6.16 71.24 0.44 -4.74 16 18 S -0.16 -9.01 20.57 -56.49 -1.16 -10.17 16 19 C -0.54 -31.71 9.50 67.95 0.65 -31.06 16 20 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 21 C 0.01 0.62 5.49 84.86 0.47 1.09 16 22 N -0.91 -57.66 13.22 21.65 0.29 -57.37 16 23 Si 1.00 44.44 29.55 68.60 2.03 46.47 16 24 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 25 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 26 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 27 O 0.07 2.21 11.20 71.62 0.80 3.01 16 28 N -0.41 -13.01 12.07 -49.55 -0.60 -13.61 16 29 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.21 1.67 8.06 -2.91 -0.02 1.65 16 33 H 0.10 0.99 7.44 -2.39 -0.02 0.97 16 34 H 0.07 1.67 8.05 -2.39 -0.02 1.65 16 35 H 0.35 4.12 8.46 -89.70 -0.76 3.36 16 36 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.06 0.35 7.45 -2.39 -0.02 0.33 16 38 H 0.07 0.32 8.13 -2.39 -0.02 0.30 16 39 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 43 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.41 7.04 8.60 -92.70 -0.80 6.24 16 45 H 0.11 3.88 8.14 -2.40 -0.02 3.87 16 46 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 47 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -87.74 408.72 1.93 -85.81 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -0.58 Total: 20.88 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: 5.95 Total: -14.44 kcal Atomic # 7 Polarization: -98.74 SS G_CDS: -5.06 Total: -103.80 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: 0.75 Total: -24.75 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 16 Polarization: -9.01 SS G_CDS: -1.16 Total: -10.17 kcal Total: -87.74 1.93 -85.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133736107.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.715 kcal (2) G-P(sol) polarization free energy of solvation -87.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds